Pregenerated sensors for LINC00111 (Homo sapiens)
Ensembl gene IDs: ENSG00000227702Ensembl transcript IDs: ENST00000413718.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GACAGTTCTGCAGGCCAAGCCCTCTGGCCTCTGCCACTCATTAGCTaGGCCCGTTACATAACTTCCCTGGGCTCTGCCATCGGCCTTCCC | + |
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Preference number: 5 (lower is better) Translates to: DSSAGQALWPLPLIS*ARYITSLGSAIGLP Trigger: GGGAAGGCCGATGGCAGAGCCCAGGGAAGTTATGTAACGGGCCCAGCTAATGAGTGGCAGAGGCCAGAGGGCTTGGCCTGCAGAACTGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS CCA 90 bp | GTGCATCTGAGAAGAGCCCGCTTCCCCTTCAGGAGACGGAGTGTATaGACGGCCTCTGGCCTTAGACAGTTCTGCAGGCCAAGCCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: VHLRRARFPFRRRSV*TASGLRQFCRPSPL Trigger: CAGAGGGCTTGGCCTGCAGAACTGTCTAAGGCCAGAGGCCGTCCATACACTCCGTCTCCTGAAGGGGAAGCGGGCTCTTCTCAGATGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS GCA 90 bp | CCACTGGCCCCACTTAGTAACCCGAGGATACTCGTGGATGCAGGCTaGTTTCCTGACCCCGAATTCGGTGCCCACGAAACAGCCTCTCAA | + |
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Preference number: 5 (lower is better) Translates to: PLAPLSNPRILVDAG*FPDPEFGAHETASQ Trigger: TTGAGAGGCTGTTTCGTGGGCACCGAATTCGGGGTCAGGAAAGCAGCCTGCATCCACGAGTATCCTCGGGTTACTAAGTGGGGCCAGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS CCA 90 bp | TATGGACGGCCTCTGGCCTTAGACAGTTCTGCAGGCCAAGCCCTCTaGCCTCTGCCACTCATTAGCTGGGCCCGTTACATAACTTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: YGRPLALDSSAGQAL*PLPLISWARYITSL Trigger: CAGGGAAGTTATGTAACGGGCCCAGCTAATGAGTGGCAGAGGCCAGAGGGCTTGGCCTGCAGAACTGTCTAAGGCCAGAGGCCGTCCATA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS CCA 90 bp | TACACCTGGAGCCACTGGCCCCACTTAGTAACCCGAGGATACTCGTaGATGCAGGCTGCTTTCCTGACCCCGAATTCGGTGCCCACGAAA | + |
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Preference number: 5 (lower is better) Translates to: YTWSHWPHLVTRGYS*MQAAFLTPNSVPTK Trigger: TTTCGTGGGCACCGAATTCGGGGTCAGGAAAGCAGCCTGCATCCACGAGTATCCTCGGGTTACTAAGTGGGGCCAGTGGCTCCAGGTGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS TCA 90 bp | GCCTCTCAATCTGAGGACAGGATTTTCACATTGTCCCTGTGCATCTaGGAAGAGCCCGCTTCCCCTTCAGGAGACGGAGTGTATGGACGG | + |
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Preference number: 5 (lower is better) Translates to: ASQSEDRIFTLSLCI*EEPASPSGDGVYGR Trigger: CCGTCCATACACTCCGTCTCCTGAAGGGGAAGCGGGCTCTTCTCAGATGCACAGGGACAATGTGAAAATCCTGTCCTCAGATTGAGAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS GCA 90 bp | TTGAGTCATGTGGGTCATGCCACGTGCCAGAACCATCTTCGGCTTTaGAGCAGAACTCCACTGTGTTCACCATCTTCCCTTCTCCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: LSHVGHATCQNHLRL*SRTPLCSPSSLLPG Trigger: GCCTGGGAGAAGGGAAGATGGTGAACACAGTGGAGTTCTGCTGCAAAGCCGAAGATGGTTCTGGCACGTGGCATGACCCACATGACTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS GCA 90 bp | ATGAAGTCAGATCTCCTGATGTTGAGTCATGTGGGTCATGCCACGTaGCAGAACCATCTTCGGCTTTGCAGCAGAACTCCACTGTGTTCA | + |
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Preference number: 5 (lower is better) Translates to: MKSDLLMLSHVGHAT*QNHLRLCSRTPLCS Trigger: TGAACACAGTGGAGTTCTGCTGCAAAGCCGAAGATGGTTCTGGCACGTGGCATGACCCACATGACTCAACATCAGGAGATCTGACTTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS GCA 90 bp | CACTTTTATGAAGTCAGATCTCCTGATGTTGAGTCATGTGGGTCATaGCACGTGCCAGAACCATCTTCGGCTTTGCAGCAGAACTCCACT | + |
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Preference number: 5 (lower is better) Translates to: HFYEVRSPDVESCGS*HVPEPSSALQQNST Trigger: AGTGGAGTTCTGCTGCAAAGCCGAAGATGGTTCTGGCACGTGGCATGACCCACATGACTCAACATCAGGAGATCTGACTTCATAAAAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS CCA 72 bp | GCAGGCCAAGCCCTCTGGCCTCTGCCACTCATTAGCTaGGCCCGTTACATAACTTCCCTGGGCTCTGCCATC | + |
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Preference number: 6 (lower is better) Translates to: AGQALWPLPLIS*ARYITSLGSAI Trigger: GATGGCAGAGCCCAGGGAAGTTATGTAACGGGCCCAGCTAATGAGTGGCAGAGGCCAGAGGGCTTGGCCTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS CCA 72 bp | AGAAGAGCCCGCTTCCCCTTCAGGAGACGGAGTGTATaGACGGCCTCTGGCCTTAGACAGTTCTGCAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: RRARFPFRRRSV*TASGLRQFCRP Trigger: TGGCCTGCAGAACTGTCTAAGGCCAGAGGCCGTCCATACACTCCGTCTCCTGAAGGGGAAGCGGGCTCTTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS CCA 72 bp | CCTCTGGCCTTAGACAGTTCTGCAGGCCAAGCCCTCTaGCCTCTGCCACTCATTAGCTGGGCCCGTTACATA | + |
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Preference number: 6 (lower is better) Translates to: PLALDSSAGQAL*PLPLISWARYI Trigger: TATGTAACGGGCCCAGCTAATGAGTGGCAGAGGCCAGAGGGCTTGGCCTGCAGAACTGTCTAAGGCCAGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS CCA 72 bp | AGCCACTGGCCCCACTTAGTAACCCGAGGATACTCGTaGATGCAGGCTGCTTTCCTGACCCCGAATTCGGTG | + |
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Preference number: 6 (lower is better) Translates to: SHWPHLVTRGYS*MQAAFLTPNSV Trigger: CACCGAATTCGGGGTCAGGAAAGCAGCCTGCATCCACGAGTATCCTCGGGTTACTAAGTGGGGCCAGTGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS GCA 72 bp | CCACTTAGTAACCCGAGGATACTCGTGGATGCAGGCTaGTTTCCTGACCCCGAATTCGGTGCCCACGAAACA | + |
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Preference number: 6 (lower is better) Translates to: PLSNPRILVDAG*FPDPEFGAHET Trigger: TGTTTCGTGGGCACCGAATTCGGGGTCAGGAAAGCAGCCTGCATCCACGAGTATCCTCGGGTTACTAAGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS TCA 72 bp | TCTGAGGACAGGATTTTCACATTGTCCCTGTGCATCTaGGAAGAGCCCGCTTCCCCTTCAGGAGACGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: SEDRIFTLSLCI*EEPASPSGDGV Trigger: CACTCCGTCTCCTGAAGGGGAAGCGGGCTCTTCTCAGATGCACAGGGACAATGTGAAAATCCTGTCCTCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS GCA 72 bp | GTGGGTCATGCCACGTGCCAGAACCATCTTCGGCTTTaGAGCAGAACTCCACTGTGTTCACCATCTTCCCTT | + |
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Preference number: 6 (lower is better) Translates to: VGHATCQNHLRL*SRTPLCSPSSL Trigger: AAGGGAAGATGGTGAACACAGTGGAGTTCTGCTGCAAAGCCGAAGATGGTTCTGGCACGTGGCATGACCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS TCA 72 bp | CCCCGAATTCGGTGCCCACGAAACAGCCTCTCAATCTaGGGACAGGATTTTCACATTGTCCCTGTGCATCTG | + |
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Preference number: 6 (lower is better) Translates to: PRIRCPRNSLSI*GQDFHIVPVHL Trigger: CAGATGCACAGGGACAATGTGAAAATCCTGTCCTCAGATTGAGAGGCTGTTTCGTGGGCACCGAATTCGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS GCA 72 bp | GATCTCCTGATGTTGAGTCATGTGGGTCATGCCACGTaGCAGAACCATCTTCGGCTTTGCAGCAGAACTCCA | + |
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Preference number: 6 (lower is better) Translates to: DLLMLSHVGHAT*QNHLRLCSRTP Trigger: TGGAGTTCTGCTGCAAAGCCGAAGATGGTTCTGGCACGTGGCATGACCCACATGACTCAACATCAGGAGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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| CDS GCA 72 bp | GAAGTCAGATCTCCTGATGTTGAGTCATGTGGGTCATaGCACGTGCCAGAACCATCTTCGGCTTTGCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: EVRSPDVESCGS*HVPEPSSALQQ Trigger: CTGCTGCAAAGCCGAAGATGGTTCTGGCACGTGGCATGACCCACATGACTCAACATCAGGAGATCTGACTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413718.1 |
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