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Pregenerated sensors for LINC00052 (Homo sapiens)

Ensembl gene IDs: ENSG00000259527

Ensembl transcript IDs: ENST00000560153.2

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GAGAAGTCCAAGGTCGAAGGTTCACCTCAGGTGAGACCTTCCTGCTaGGGACTCTCTGCAGAGTTCCAAGGTGTTGCAGGGCAATCGCAT +
Preference number: 5 (lower is better)
Translates to: EKSKVEGSPQVRPSC*GLSAEFQGVAGQSH
Trigger: ATGCGATTGCCCTGCAACACCTTGGAACTCTGCAGAGAGTCCCCAGCAGGAAGGTCTCACCTGAGGTGAACCTTCGACCTTGGACTTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS GCA 90 bp GGTGGAGGTGGGAGGTGGTTAGGTAGCTGGTCTTGGGGAAGGTGCTaGTTTGAATGTGAAGACACATGTGGGATGAACAGATGGAGCAGA +
Preference number: 5 (lower is better)
Translates to: GGGGRWLGSWSWGRC*FECEDTCGMNRWSR
Trigger: TCTGCTCCATCTGTTCATCCCACATGTGTCTTCACATTCAAAGCAGCACCTTCCCCAAGACCAGCTACCTAACCACCTCCCACCTCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS TCA 90 bp CATGCCTGTTCTGTCCATGGCATAGTCTTCTCACCTGTTAAAGTTTaGGTCATAAACCCCCGCCCCCACTATCACTTCTCAGTCTATTTG +
Preference number: 5 (lower is better)
Translates to: HACSVHGIVFSPVKV*VINPRPHYHFSVYL
Trigger: CAAATAGACTGAGAAGTGATAGTGGGGGCGGGGGTTTATGACTCAAACTTTAACAGGTGAGAAGACTATGCCATGGACAGAACAGGCATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS TCA 90 bp CAAAAAGTGAAGGTAAGGACAGACGTGTCTTTTGAAAGCTGTGAATaGGTGTGTGTGTGTGTGAGAGAGAAACATGGGAAGGATGAGAGA +
Preference number: 5 (lower is better)
Translates to: QKVKVRTDVSFESCE*VCVCVREKHGKDER
Trigger: TCTCTCATCCTTCCCATGTTTCTCTCTCACACACACACACACTCATTCACAGCTTTCAAAAGACACGTCTGTCCTTACCTTCACTTTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS TCA 90 bp GACACATGTGGGATGAACAGATGGAGCAGAAAGCTCGTGTGCATGTaGGGTATAGTTCAGAGTAAAGTGAGTGTGCTGTTTAAAACAAAA +
Preference number: 5 (lower is better)
Translates to: DTCGMNRWSRKLVCM*GIVQSKVSVLFKTK
Trigger: TTTTGTTTTAAACAGCACACTCACTTTACTCTGAACTATACCTCACATGCACACGAGCTTTCTGCTCCATCTGTTCATCCCACATGTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS TCA 72 bp AGGCTGAGAAGTCCAAGGTCGAAGGTTCACCTCAGGTaGGACCTTCCTGCTGGGGACTCTCTGCAGAGTTCC +
Preference number: 6 (lower is better)
Translates to: RLRSPRSKVHLR*DLPAGDSLQSS
Trigger: GGAACTCTGCAGAGAGTCCCCAGCAGGAAGGTCTCACCTGAGGTGAACCTTCGACCTTGGACTTCTCAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS GCA 72 bp TTCACCTCAGGTGAGACCTTCCTGCTGGGGACTCTCTaGAGAGTTCCAAGGTGTTGCAGGGCAATCGCATGG +
Preference number: 6 (lower is better)
Translates to: FTSGETFLLGTL*RVPRCCRAIAW
Trigger: CCATGCGATTGCCCTGCAACACCTTGGAACTCTGCAGAGAGTCCCCAGCAGGAAGGTCTCACCTGAGGTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS CCA 72 bp AAGGTCGAAGGTTCACCTCAGGTGAGACCTTCCTGCTaGGGACTCTCTGCAGAGTTCCAAGGTGTTGCAGGG +
Preference number: 6 (lower is better)
Translates to: KVEGSPQVRPSC*GLSAEFQGVAG
Trigger: CCCTGCAACACCTTGGAACTCTGCAGAGAGTCCCCAGCAGGAAGGTCTCACCTGAGGTGAACCTTCGACCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS TCA 72 bp CTTGATTTGATGGTTGCCATTCTTCATTCTGGAGGCTaGGAAGTCCAAGGTCGAAGGTTCACCTCAGGTGAG +
Preference number: 6 (lower is better)
Translates to: LDLMVAILHSGG*EVQGRRFTSGE
Trigger: CTCACCTGAGGTGAACCTTCGACCTTGGACTTCTCAGCCTCCAGAATGAAGAATGGCAACCATCAAATCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS TCA 72 bp GAAGGTGCTGCTTTGAATGTGAAGACACATGTGGGATaGACAGATGGAGCAGAAAGCTCGTGTGCATGTGAG +
Preference number: 6 (lower is better)
Translates to: EGAALNVKTHVG*TDGAESSCACE
Trigger: CTCACATGCACACGAGCTTTCTGCTCCATCTGTTCATCCCACATGTGTCTTCACATTCAAAGCAGCACCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS CAA 72 bp CTACTAACTGAAGATGACAGCTTTCCAGGAGGCTCTTaGACAAAGCTGAATTCAGGTGGGAACCAGGCCTTC +
Preference number: 6 (lower is better)
Translates to: LLTEDDSFPGGS*TKLNSGGNQAF
Trigger: GAAGGCCTGGTTCCCACCTGAATTCAGCTTTGTCAAAGAGCCTCCTGGAAAGCTGTCATCTTCAGTTAGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS TCA 72 bp TCTGTCCATGGCATAGTCTTCTCACCTGTTAAAGTTTaGGTCATAAACCCCCGCCCCCACTATCACTTCTCA +
Preference number: 6 (lower is better)
Translates to: SVHGIVFSPVKV*VINPRPHYHFS
Trigger: TGAGAAGTGATAGTGGGGGCGGGGGTTTATGACTCAAACTTTAACAGGTGAGAAGACTATGCCATGGACAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS TCA 72 bp TTGCAGACTGTAGGGCTTTGGGCCAATTTCTTGATTTaGTGGTTGCCATTCTTCATTCTGGAGGCTGAGAAG +
Preference number: 6 (lower is better)
Translates to: LQTVGLWANFLI*WLPFFILEAEK
Trigger: CTTCTCAGCCTCCAGAATGAAGAATGGCAACCATCAAATCAAGAAATTGGCCCAAAGCCCTACAGTCTGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS TCA 72 bp GGGATGAACAGATGGAGCAGAAAGCTCGTGTGCATGTaGGGTATAGTTCAGAGTAAAGTGAGTGTGCTGTTT +
Preference number: 6 (lower is better)
Translates to: GMNRWSRKLVCM*GIVQSKVSVLF
Trigger: AAACAGCACACTCACTTTACTCTGAACTATACCTCACATGCACACGAGCTTTCTGCTCCATCTGTTCATCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS CAA 72 bp AAAATCCCTGCAGATTTCAGATATGCCAAGCTCATCTaGAGTATGACAAGGAGGACAGTTGCTTATGTTGTG +
Preference number: 6 (lower is better)
Translates to: KIPADFRYAKLI*SMTRRTVAYVV
Trigger: CACAACATAAGCAACTGTCCTCCTTGTCATACTCAAGATGAGCTTGGCATATCTGAAATCTGCAGGGATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS TCA 72 bp TCACAATTCATGGAGAAACTTCAGGATGAATTGTTATaGTGTTTGCAGACTGTAGGGCTTTGGGCCAATTTC +
Preference number: 6 (lower is better)
Translates to: SQFMEKLQDELL*CLQTVGLWANF
Trigger: GAAATTGGCCCAAAGCCCTACAGTCTGCAAACATCATAACAATTCATCCTGAAGTTTCTCCATGAATTGTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS CCA 72 bp GGATTGCAGAATGATGTAGCAAAGCATCACAATTCATaGAGAAACTTCAGGATGAATTGTTATGATGTTTGC +
Preference number: 6 (lower is better)
Translates to: GLQNDVAKHHNS*RNFRMNCYDVC
Trigger: GCAAACATCATAACAATTCATCCTGAAGTTTCTCCATGAATTGTGATGCTTTGCTACATCATTCTGCAATCC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS GCA 72 bp CGTTTCAAAGTTCATTCGTGTTGTAGCATGCATCTGTaGTTCATTAGTTTTGATTGCCAAATAGTATTGCAT +
Preference number: 6 (lower is better)
Translates to: RFKVHSCCSMHL*FISFDCQIVLH
Trigger: ATGCAATACTATTTGGCAATCAAAACTAATGAAGCACAGATGCATGCTACAACACGAATGAACTTTGAAACG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000560153.2
CDS GCA 72 bp TGTTGTAGCATGCATCTGTGCTTCATTAGTTTTGATTaGCAAATAGTATTGCATTGTAACTCTGGTATCTTT +
Preference number: 6 (lower is better)
Translates to: CCSMHLCFISFD*QIVLHCNSGIF
Trigger: AAAGATACCAGAGTTACAATGCAATACTATTTGGCAATCAAAACTAATGAAGCACAGATGCATGCTACAACA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000560153.2