Pregenerated sensors for LINC-ROR (Homo sapiens)
Ensembl gene IDs: ENSG00000258609Ensembl transcript IDs: ENST00000553704.3, ENST00000642403.1, ENST00000643706.1, ENST00000644118.1, ENST00000644575.1, ENST00000644805.1, ENST00000645956.1, ENST00000646314.1
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AAGGAGTCAGAGAGCCTTGGGCCAGAGTTCCAGCGGCTGTGGGAGTaGCTGTCAGGTGAGTTGGACAGTCCGATTTCCAGTGGGGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: KESESLGPEFQRLWE*LSGELDSPISSGVW Trigger: CCAGACCCCACTGGAAATCGGACTGTCCAACTCACCTGACAGCCACTCCCACAGCCGCTGGAACTCTGGCCCAAGGCTCTCTGACTCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000553704.3 ENST00000643706.1 ENST00000644575.1 ENST00000645956.1 ENST00000646314.1 |
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| CDS TCA 90 bp | GCCTTCCTCCCAAGGAAGGCACCCAGGAGCACCTTCTGGGGTGAGTaGAGCCCTGAAATTGGCAGAAAGGCAAGGCGAGTGTCCAGCTTG | + |
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Preference number: 5 (lower is better) Translates to: AFLPRKAPRSTFWGE*SPEIGRKARRVSSL Trigger: CAAGCTGGACACTCGCCTTGCCTTTCTGCCAATTTCAGGGCTTCACTCACCCCAGAAGGTGCTCCTGGGTGCCTTCCTTGGGAGGAAGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000643706.1 |
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| CDS GCA 90 bp | CAGAAAGGCAAGGCGAGTGTCCAGCTTGCATGCCAGGCTGGCCAGTaGATCTCTCAGTGGCTTCTGCAGTCAGAGCAGGCTCCATTGACC | + |
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Preference number: 5 (lower is better) Translates to: QKGKASVQLACQAGQ*ISQWLLQSEQAPLT Trigger: GGTCAATGGAGCCTGCTCTGACTGCAGAAGCCACTGAGAGATGCACTGGCCAGCCTGGCATGCAAGCTGGACACTCGCCTTGCCTTTCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000643706.1 |
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| CDS CCA 90 bp | AGAGTGCAGAGGCAGGTGGTCCCTGTGTCCAGTGGCTGTGCTAGATaGGCCAGCGCAGGCTCTTTCTCTCCTGTGGTTTCATTGTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: RVQRQVVPVSSGCAR*ASAGSFSPVVSLSW Trigger: CCAGGACAATGAAACCACAGGAGAGAAAGAGCCTGCGCTGGCCCATCTAGCACAGCCACTGGACACAGGGACCACCTGCCTCTGCACTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553704.3 |
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| CDS CCA 90 bp | AAATTGGCAGAAAGGCAAGGCGAGTGTCCAGCTTGCATGCCAGGCTaGCCAGTGCATCTCTCAGTGGCTTCTGCAGTCAGAGCAGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: KLAERQGECPACMPG*PVHLSVASAVRAGS Trigger: GGAGCCTGCTCTGACTGCAGAAGCCACTGAGAGATGCACTGGCCAGCCTGGCATGCAAGCTGGACACTCGCCTTGCCTTTCTGCCAATTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000643706.1 |
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| CDS CCA 90 bp | CCAGTGGCTGTGCTAGATGGGCCAGCGCAGGCTCTTTCTCTCCTGTaGTTTCATTGTCCTGGGGTGTTCACCTCCTCTGCATCATCCAAG | + |
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Preference number: 5 (lower is better) Translates to: PVAVLDGPAQALSLL*FHCPGVFTSSASSK Trigger: CTTGGATGATGCAGAGGAGGTGAACACCCCAGGACAATGAAACCACAGGAGAGAAAGAGCCTGCGCTGGCCCATCTAGCACAGCCACTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553704.3 |
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| CDS CCA 90 bp | CTAACGGGGCTCAGGCCCCACTCTACTGTTCCATCATCAACTCAGTaGGGAAGACTCCAGACTGCCCAGCACTCTGATTCATGCCAACTC | + |
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Preference number: 5 (lower is better) Translates to: LTGLRPHSTVPSSTQ*GRLQTAQHSDSCQL Trigger: GAGTTGGCATGAATCAGAGTGCTGGGCAGTCTGGAGTCTTCCCCACTGAGTTGATGATGGAACAGTAGAGTGGGGCCTGAGCCCCGTTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000553704.3 ENST00000645956.1 ENST00000646314.1 |
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| CDS GCA 90 bp | AAATGCTATGCAAAGAAAAGCACTGCCTTTGGGCCAGGTCACAGCTaGTTCCTTGTCCCAGCGCCTGCTCTCCTGGGTCATCTGGTGGAA | + |
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Preference number: 5 (lower is better) Translates to: KCYAKKSTAFGPGHS*FLVPAPALLGHLVE Trigger: TTCCACCAGATGACCCAGGAGAGCAGGCGCTGGGACAAGGAAGCAGCTGTGACCTGGCCCAAAGGCAGTGCTTTTCTTTGCATAGCATTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000644805.1 |
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| CDS TCA 90 bp | AGCTGGTTTGAGGTGGCTGGTGAGAGATCCAGGAGAGTACAACCCTaGGACCTGCTGATCCCATTCCTGAGACCATTTTGGGCTTTTGGC | + |
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Preference number: 5 (lower is better) Translates to: SWFEVAGERSRRVQP*DLLIPFLRPFWAFG Trigger: GCCAAAAGCCCAAAATGGTCTCAGGAATGGGATCAGCAGGTCTCAGGGTTGTACTCTCCTGGATCTCTCACCAGCCACCTCAAACCAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000645956.1 |
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| CDS TCA 90 bp | CTCTCAGTGGCTTCTGCAGTCAGAGCAGGCTCCATTGACCATTCATaGGATGTCAGGTGGTCTTCCACTGTGAGAGTTACCCGAAGCTCG | + |
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Preference number: 5 (lower is better) Translates to: LSVASAVRAGSIDHS*DVRWSSTVRVTRSS Trigger: CGAGCTTCGGGTAACTCTCACAGTGGAAGACCACCTGACATCTCATGAATGGTCAATGGAGCCTGCTCTGACTGCAGAAGCCACTGAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000643706.1 |
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| CDS CCA 90 bp | GTAGGCTCCTGTGGCACACTGCTCAAAACCTCACTCCCATGTGCATaGTGTTCACATGAATCATTCAGCAGCTCATGCCCTAACGGGGCT | + |
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Preference number: 5 (lower is better) Translates to: VGSCGTLLKTSLPCA*CSHESFSSSCPNGA Trigger: AGCCCCGTTAGGGCATGAGCTGCTGAATGATTCATGTGAACACCATGCACATGGGAGTGAGGTTTTGAGCAGTGTGCCACAGGAGCCTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000553704.3 ENST00000645956.1 ENST00000646314.1 |
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| CDS TCA 90 bp | GCCAGTGCATCTCTCAGTGGCTTCTGCAGTCAGAGCAGGCTCCATTaGCCATTCATGAGATGTCAGGTGGTCTTCCACTGTGAGAGTTAC | + |
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Preference number: 5 (lower is better) Translates to: ASASLSGFCSQSRLH*PFMRCQVVFHCESY Trigger: GTAACTCTCACAGTGGAAGACCACCTGACATCTCATGAATGGTCAATGGAGCCTGCTCTGACTGCAGAAGCCACTGAGAGATGCACTGGC 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000643706.1 |
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| CDS GCA 90 bp | TCACTCCCATGTGCATGGTGTTCACATGAATCATTCAGCAGCTCATaGCCTAACGGGGCTCAGGCCCCACTCTACTGTTCCATCATCAAC | + |
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Preference number: 5 (lower is better) Translates to: SLPCAWCSHESFSSS*PNGAQAPLYCSIIN Trigger: GTTGATGATGGAACAGTAGAGTGGGGCCTGAGCCCCGTTAGGGCATGAGCTGCTGAATGATTCATGTGAACACCATGCACATGGGAGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000553704.3 ENST00000645956.1 ENST00000646314.1 |
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| CDS TCA 90 bp | AGCTGGTTTGAGGTGGCTGGTGAGAGATCCAGGAGAGTACAACCCTaGGACCTGCTGATCCCATTCCTGAGACCTGGAAGAACTATAACT | + |
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Preference number: 5 (lower is better) Translates to: SWFEVAGERSRRVQP*DLLIPFLRPGRTIT Trigger: AGTTATAGTTCTTCCAGGTCTCAGGAATGGGATCAGCAGGTCTCAGGGTTGTACTCTCCTGGATCTCTCACCAGCCACCTCAAACCAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553704.3 |
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| CDS TCA 90 bp | GCCCAGCACTCTGATTCATGCCAACTCTCAGGCTTCCTCTCCTCTTaGCAATGTTTGGTTTTCCCTTCCACTGTGAGAGTTACCCGAAGC | + |
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Preference number: 5 (lower is better) Translates to: AQHSDSCQLSGFLSS*QCLVFPSTVRVTRS Trigger: GCTTCGGGTAACTCTCACAGTGGAAGGGAAAACCAAACATTGTCAAGAGGAGAGGAAGCCTGAGAGTTGGCATGAATCAGAGTGCTGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000646314.1 |
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| CDS TCA 90 bp | TCCATCATCAACTCAGTGGGGAAGACTCCAGACTGCCCAGCACTCTaGTTCATGCCAACTCTCAGGCTTCCTCTCCTCTTGACAATGTTT | + |
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Preference number: 5 (lower is better) Translates to: SIINSVGKTPDCPAL*FMPTLRLPLLLTMF Trigger: AAACATTGTCAAGAGGAGAGGAAGCCTGAGAGTTGGCATGAATCAGAGTGCTGGGCAGTCTGGAGTCTTCCCCACTGAGTTGATGATGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000553704.3 ENST00000645956.1 ENST00000646314.1 |
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| CDS CCA 90 bp | CACACCTGTCCAGATCTGAGCCCATTACAGAGTGGTCTGCATAGCTaGAGTGTTGCAGGTGCTTTCTTTTACTTCCTCATGGAGAGTTTC | + |
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Preference number: 5 (lower is better) Translates to: HTCPDLSPLQSGLHS*SVAGAFFYFLMESF Trigger: GAAACTCTCCATGAGGAAGTAAAAGAAAGCACCTGCAACACTCCAGCTATGCAGACCACTCTGTAATGGGCTCAGATCTGGACAGGTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000553704.3 ENST00000645956.1 |
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| CDS TCA 90 bp | TTTGAAATTGGTGAGATGTTTCTTGGGCTGGTTGGTCTAAGGACCTaGGGTTGTAGGTGGATCTTTCTCACGGAGCAAAGAGCAGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: FEIGEMFLGLVGLRT*GCRWIFLTEQRAGG Trigger: TCCTCCTGCTCTTTGCTCCGTGAGAAAGATCCACCTACAACCTCAGGTCCTTAGACCAACCAGCCCAAGAAACATCTCACCAATTTCAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000553704.3 ENST00000643706.1 ENST00000644575.1 ENST00000645956.1 ENST00000646314.1 |
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| CDS GCA 90 bp | TCTTTCTCTCCTGTGGTTTCATTGTCCTGGGGTGTTCACCTCCTCTaGATCATCCAAGATGTCTCTCATCACATCCATACTCTGAACAGC | + |
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Preference number: 5 (lower is better) Translates to: SFSPVVSLSWGVHLL*IIQDVSHHIHTLNS Trigger: GCTGTTCAGAGTATGGATGTGATGAGAGACATCTTGGATGATGCAGAGGAGGTGAACACCCCAGGACAATGAAACCACAGGAGAGAAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553704.3 |
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| CDS TCA 90 bp | GCCCAGCACTCTGATTCATGCCAACTCTCAGGCTTCCTCTCCTCTTaGCAATGTTTGGTTTTCCCTATTCAGGATATAGGAGATAAGGAG | + |
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Preference number: 5 (lower is better) Translates to: AQHSDSCQLSGFLSS*QCLVFPIQDIGDKE Trigger: CTCCTTATCTCCTATATCCTGAATAGGGAAAACCAAACATTGTCAAGAGGAGAGGAAGCCTGAGAGTTGGCATGAATCAGAGTGCTGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000553704.3 ENST00000645956.1 |
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| CDS CCA 90 bp | CTGCTGATCCCATTCCTGAGACCTGGAAGAACTATAACTCATAAGTaGAGCAGGTATGAGATTGAGTCCACAACTTCAGATATTCAAGCA | + |
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Preference number: 5 (lower is better) Translates to: LLIPFLRPGRTITHK*SRYEIESTTSDIQA Trigger: TGCTTGAATATCTGAAGTTGTGGACTCAATCTCATACCTGCTCCACTTATGAGTTATAGTTCTTCCAGGTCTCAGGAATGGGATCAGCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553704.3 |
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| CDS CCA 90 bp | GTCTGCATAGCTGGAGTGTTGCAGGTGCTTTCTTTTACTTCCTCATaGAGAGTTTCTGTGATTGTAGTCATAGTGCCATCTTTAAAAAGC | + |
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Preference number: 5 (lower is better) Translates to: VCIAGVLQVLSFTSS*RVSVIVVIVPSLKS Trigger: GCTTTTTAAAGATGGCACTATGACTACAATCACAGAAACTCTCCATGAGGAAGTAAAAGAAAGCACCTGCAACACTCCAGCTATGCAGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000553704.3 ENST00000645956.1 |
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| CDS GCA 90 bp | TTATGTTTCTTCAACATTGCCAGTTTCCATGTTGAACCTTCATTCTaGCACAGTTATGTAACAGGAGCCCAAAGTAACAGTGCCTTAAAC | + |
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Preference number: 5 (lower is better) Translates to: LCFFNIASFHVEPSF*HSYVTGAQSNSALN Trigger: GTTTAAGGCACTGTTACTTTGGGCTCCTGTTACATAACTGTGGCAGAATGAAGGTTCAACATGGAAACTGGCAATGTTGAAGAAACATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553704.3 |
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| CDS TCA 72 bp | GCCAGAGTTCCAGCGGCTGTGGGAGTGGCTGTCAGGTaGGTTGGACAGTCCGATTTCCAGTGGGGTCTGGAT | + |
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Preference number: 6 (lower is better) Translates to: ARVPAAVGVAVR*VGQSDFQWGLD Trigger: ATCCAGACCCCACTGGAAATCGGACTGTCCAACTCACCTGACAGCCACTCCCACAGCCGCTGGAACTCTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000553704.3 ENST00000643706.1 ENST00000644575.1 ENST00000645956.1 ENST00000646314.1 |
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| CDS GCA 72 bp | AAGGCGAGTGTCCAGCTTGCATGCCAGGCTGGCCAGTaGATCTCTCAGTGGCTTCTGCAGTCAGAGCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: KASVQLACQAGQ*ISQWLLQSEQA Trigger: AGCCTGCTCTGACTGCAGAAGCCACTGAGAGATGCACTGGCCAGCCTGGCATGCAAGCTGGACACTCGCCTT 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000643706.1 |
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| CDS CCA 72 bp | GAGTCAGAGAGCCTTGGGCCAGAGTTCCAGCGGCTGTaGGAGTGGCTGTCAGGTGAGTTGGACAGTCCGATT | + |
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Preference number: 6 (lower is better) Translates to: ESESLGPEFQRL*EWLSGELDSPI Trigger: AATCGGACTGTCCAACTCACCTGACAGCCACTCCCACAGCCGCTGGAACTCTGGCCCAAGGCTCTCTGACTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000553704.3 ENST00000642403.1 ENST00000643706.1 ENST00000644118.1 ENST00000644575.1 ENST00000644805.1 ENST00000645956.1 ENST00000646314.1 |
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| CDS CCA 72 bp | AGGCAGGTGGTCCCTGTGTCCAGTGGCTGTGCTAGATaGGCCAGCGCAGGCTCTTTCTCTCCTGTGGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: RQVVPVSSGCAR*ASAGSFSPVVS Trigger: TGAAACCACAGGAGAGAAAGAGCCTGCGCTGGCCCATCTAGCACAGCCACTGGACACAGGGACCACCTGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553704.3 |
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| CDS TCA 72 bp | CCAAGGAAGGCACCCAGGAGCACCTTCTGGGGTGAGTaGAGCCCTGAAATTGGCAGAAAGGCAAGGCGAGTG | + |
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Preference number: 6 (lower is better) Translates to: PRKAPRSTFWGE*SPEIGRKARRV Trigger: CACTCGCCTTGCCTTTCTGCCAATTTCAGGGCTTCACTCACCCCAGAAGGTGCTCCTGGGTGCCTTCCTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000643706.1 |
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| CDS CCA 72 bp | GAAAGGCAAGGCGAGTGTCCAGCTTGCATGCCAGGCTaGCCAGTGCATCTCTCAGTGGCTTCTGCAGTCAGA | + |
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Preference number: 6 (lower is better) Translates to: ERQGECPACMPG*PVHLSVASAVR Trigger: TCTGACTGCAGAAGCCACTGAGAGATGCACTGGCCAGCCTGGCATGCAAGCTGGACACTCGCCTTGCCTTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000643706.1 |
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| CDS TCA 72 bp | CTTTCTCACGGAGCAAAGAGCAGGAGGACAGGGTACTaGTCTCCCAAGGGAGGTCCCCCTATCCGAGTCACA | + |
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Preference number: 6 (lower is better) Translates to: LSHGAKSRRTGY*SPKGGPPIRVT Trigger: TGTGACTCGGATAGGGGGACCTCCCTTGGGAGATCAGTACCCTGTCCTCCTGCTCTTTGCTCCGTGAGAAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000553704.3 ENST00000643706.1 ENST00000644575.1 ENST00000645956.1 ENST00000646314.1 |
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| CDS GCA 72 bp | AATTGGCAGAAAGGCAAGGCGAGTGTCCAGCTTGCATaGCAGGCTGGCCAGTGCATCTCTCAGTGGCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: NWQKGKASVQLA*QAGQCISQWLL Trigger: CAGAAGCCACTGAGAGATGCACTGGCCAGCCTGGCATGCAAGCTGGACACTCGCCTTGCCTTTCTGCCAATT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000643706.1 |
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| CDS CAA 90 bp | ATGCAAAGAAAAGCACTGCCTTTGGGCCAGGTCACAGCTGCTTCCTaGTCCCAGCGCCTGCTCTCCTGGGTCATCTGGTGGAACTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: MQRKALPLGQVTAAS*SQRLLSWVIWWNCL Trigger: AAGACAGTTCCACCAGATGACCCAGGAGAGCAGGCGCTGGGACAAGGAAGCAGCTGTGACCTGGCCCAAAGGCAGTGCTTTTCTTTGCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000644805.1 |
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| CDS TCA 72 bp | GAGGTGGCTGGTGAGAGATCCAGGAGAGTACAACCCTaGGACCTGCTGATCCCATTCCTGAGACCTGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: EVAGERSRRVQP*DLLIPFLRPGR Trigger: TCTTCCAGGTCTCAGGAATGGGATCAGCAGGTCTCAGGGTTGTACTCTCCTGGATCTCTCACCAGCCACCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553704.3 |
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| CDS CCA 72 bp | AGTTCCAGCGGCTGTGGGAGTGGCTGTCAGGTGAGTTaGACAGTCCGATTTCCAGTGGGGTCTGGATTTGAA | + |
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Preference number: 6 (lower is better) Translates to: SSSGCGSGCQVS*TVRFPVGSGFE Trigger: TTCAAATCCAGACCCCACTGGAAATCGGACTGTCCAACTCACCTGACAGCCACTCCCACAGCCGCTGGAACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000553704.3 ENST00000643706.1 ENST00000644575.1 ENST00000645956.1 ENST00000646314.1 |
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| CDS CCA 72 bp | AGTGGAAGTGGACAGGCTATGGCAGCTGGTTTGAGGTaGCTGGTGAGAGATCCAGGAGAGTACAACCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: SGSGQAMAAGLR*LVRDPGEYNPE Trigger: CTCAGGGTTGTACTCTCCTGGATCTCTCACCAGCCACCTCAAACCAGCTGCCATAGCCTGTCCACTTCCACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000553704.3 ENST00000645956.1 |
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| CDS CAA 72 bp | TGGGCCAGCGCAGGCTCTTTCTCTCCTGTGGTTTCATaGTCCTGGGGTGTTCACCTCCTCTGCATCATCCAA | + |
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Preference number: 6 (lower is better) Translates to: WASAGSFSPVVS*SWGVHLLCIIQ Trigger: TTGGATGATGCAGAGGAGGTGAACACCCCAGGACAATGAAACCACAGGAGAGAAAGAGCCTGCGCTGGCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553704.3 |
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| CDS TCA 72 bp | GAGGTGGCTGGTGAGAGATCCAGGAGAGTACAACCCTaGGACCTGCTGATCCCATTCCTGAGACCATTTTGG | + |
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Preference number: 6 (lower is better) Translates to: EVAGERSRRVQP*DLLIPFLRPFW Trigger: CCAAAATGGTCTCAGGAATGGGATCAGCAGGTCTCAGGGTTGTACTCTCCTGGATCTCTCACCAGCCACCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000645956.1 |
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| CDS GCA 72 bp | TGTGCATGGTGTTCACATGAATCATTCAGCAGCTCATaGCCTAACGGGGCTCAGGCCCCACTCTACTGTTCC | + |
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Preference number: 6 (lower is better) Translates to: CAWCSHESFSSS*PNGAQAPLYCS Trigger: GGAACAGTAGAGTGGGGCCTGAGCCCCGTTAGGGCATGAGCTGCTGAATGATTCATGTGAACACCATGCACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000553704.3 ENST00000645956.1 ENST00000646314.1 |
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| CDS CAA 90 bp | TGTGCTAGATGGGCCAGCGCAGGCTCTTTCTCTCCTGTGGTTTCATaGTCCTGGGGTGTTCACCTCCTCTGCATCATCCAAGATGTCTCT | + |
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Preference number: 6 (lower is better) Translates to: CARWASAGSFSPVVS*SWGVHLLCIIQDVS Trigger: AGAGACATCTTGGATGATGCAGAGGAGGTGAACACCCCAGGACAATGAAACCACAGGAGAGAAAGAGCCTGCGCTGGCCCATCTAGCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553704.3 |
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| CDS CAA 90 bp | CCCACATGCCCTGGGACTTTCACTCTGTCAGCCCTTTCCTCCTTGTaGGGCAGAACTGGTTCAAGAAAAGACAGGAGTCAGGAGAAGGTG | + |
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Preference number: 6 (lower is better) Translates to: PTCPGTFTLSALSSL*GRTGSRKDRSQEKV Trigger: CACCTTCTCCTGACTCCTGTCTTTTCTTGAACCAGTTCTGCCCAACAAGGAGGAAAGGGCTGACAGAGTGAAAGTCCCAGGGCATGTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000553704.3 ENST00000645956.1 |
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| CDS CCA 72 bp | AGCGCAGGCTCTTTCTCTCCTGTGGTTTCATTGTCCTaGGGTGTTCACCTCCTCTGCATCATCCAAGATGTC | + |
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Preference number: 6 (lower is better) Translates to: SAGSFSPVVSLS*GVHLLCIIQDV Trigger: GACATCTTGGATGATGCAGAGGAGGTGAACACCCCAGGACAATGAAACCACAGGAGAGAAAGAGCCTGCGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553704.3 |
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| CDS CAA 90 bp | ATTCCCACATGCCCTGGGACTTTCACTCTGTCAGCCCTTTCCTCCTaGTTGGGCAGAACTGGTTCAAGAAAAGACAGGAGTCAGGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: IPTCPGTFTLSALSS*LGRTGSRKDRSQEK Trigger: CTTCTCCTGACTCCTGTCTTTTCTTGAACCAGTTCTGCCCAACAAGGAGGAAAGGGCTGACAGAGTGAAAGTCCCAGGGCATGTGGGAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000553704.3 ENST00000645956.1 |
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| CDS TCA 72 bp | GCTTCTGCAGTCAGAGCAGGCTCCATTGACCATTCATaGGATGTCAGGTGGTCTTCCACTGTGAGAGTTACC | + |
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Preference number: 6 (lower is better) Translates to: ASAVRAGSIDHS*DVRWSSTVRVT Trigger: GGTAACTCTCACAGTGGAAGACCACCTGACATCTCATGAATGGTCAATGGAGCCTGCTCTGACTGCAGAAGC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000643706.1 |
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| CDS CCA 72 bp | CACTCTGTCAGCCCTTTCCTCCTTGTTGGGCAGAACTaGTTCAAGAAAAGACAGGAGTCAGGAGAAGGTGCT | + |
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Preference number: 6 (lower is better) Translates to: HSVSPFLLVGQN*FKKRQESGEGA Trigger: AGCACCTTCTCCTGACTCCTGTCTTTTCTTGAACCAGTTCTGCCCAACAAGGAGGAAAGGGCTGACAGAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000553704.3 ENST00000645956.1 |
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| CDS CAA 72 bp | CCTGGGACTTTCACTCTGTCAGCCCTTTCCTCCTTGTaGGGCAGAACTGGTTCAAGAAAAGACAGGAGTCAG | + |
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Preference number: 6 (lower is better) Translates to: PGTFTLSALSSL*GRTGSRKDRSQ Trigger: CTGACTCCTGTCTTTTCTTGAACCAGTTCTGCCCAACAAGGAGGAAAGGGCTGACAGAGTGAAAGTCCCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000553704.3 ENST00000645956.1 |
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| CDS CAA 72 bp | TGCCCTGGGACTTTCACTCTGTCAGCCCTTTCCTCCTaGTTGGGCAGAACTGGTTCAAGAAAAGACAGGAGT | + |
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Preference number: 6 (lower is better) Translates to: CPGTFTLSALSS*LGRTGSRKDRS Trigger: ACTCCTGTCTTTTCTTGAACCAGTTCTGCCCAACAAGGAGGAAAGGGCTGACAGAGTGAAAGTCCCAGGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000553704.3 ENST00000645956.1 |
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| CDS CAA 72 bp | ATCTCTCAGTGGCTTCTGCAGTCAGAGCAGGCTCCATaGACCATTCATGAGATGTCAGGTGGTCTTCCACTG | + |
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Preference number: 6 (lower is better) Translates to: ISQWLLQSEQAP*TIHEMSGGLPL Trigger: CAGTGGAAGACCACCTGACATCTCATGAATGGTCAATGGAGCCTGCTCTGACTGCAGAAGCCACTGAGAGAT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000643706.1 |
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| CDS TCA 72 bp | GGTGAGATGTTTCTTGGGCTGGTTGGTCTAAGGACCTaGGGTTGTAGGTGGATCTTTCTCACGGAGCAAAGA | + |
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Preference number: 6 (lower is better) Translates to: GEMFLGLVGLRT*GCRWIFLTEQR Trigger: TCTTTGCTCCGTGAGAAAGATCCACCTACAACCTCAGGTCCTTAGACCAACCAGCCCAAGAAACATCTCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000553704.3 ENST00000643706.1 ENST00000644575.1 ENST00000645956.1 ENST00000646314.1 |
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| CDS CCA 72 bp | TGTGGCACACTGCTCAAAACCTCACTCCCATGTGCATaGTGTTCACATGAATCATTCAGCAGCTCATGCCCT | + |
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Preference number: 6 (lower is better) Translates to: CGTLLKTSLPCA*CSHESFSSSCP Trigger: AGGGCATGAGCTGCTGAATGATTCATGTGAACACCATGCACATGGGAGTGAGGTTTTGAGCAGTGTGCCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000553704.3 ENST00000645956.1 ENST00000646314.1 |
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| CDS GCA 72 bp | CCTGTGGTTTCATTGTCCTGGGGTGTTCACCTCCTCTaGATCATCCAAGATGTCTCTCATCACATCCATACT | + |
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Preference number: 6 (lower is better) Translates to: PVVSLSWGVHLL*IIQDVSHHIHT Trigger: AGTATGGATGTGATGAGAGACATCTTGGATGATGCAGAGGAGGTGAACACCCCAGGACAATGAAACCACAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553704.3 |
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| CDS CCA 72 bp | CCAGATCTGAGCCCATTACAGAGTGGTCTGCATAGCTaGAGTGTTGCAGGTGCTTTCTTTTACTTCCTCATG | + |
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Preference number: 6 (lower is better) Translates to: PDLSPLQSGLHS*SVAGAFFYFLM Trigger: CATGAGGAAGTAAAAGAAAGCACCTGCAACACTCCAGCTATGCAGACCACTCTGTAATGGGCTCAGATCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000553704.3 ENST00000645956.1 |
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| CDS CCA 72 bp | GGTAAACCGAATCTGTTTTCTTCTGGGAGGGAGGGCTaGGGCATCAACTGGTATGCACTGTGCTTTTTAAAT | + |
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Preference number: 6 (lower is better) Translates to: GKPNLFSSGREG*GINWYALCFLN Trigger: ATTTAAAAAGCACAGTGCATACCAGTTGATGCCCCAGCCCTCCCTCCCAGAAGAAAACAGATTCGGTTTACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000644805.1 |
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| CDS CAA 72 bp | CACTGGAATAATACCCTCCAAATCCCCATCCTAGGCTaGTCCTATTTAACGAATCCTTTGGGGGACAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: HWNNTLQIPILG*SYLTNPLGDKG Trigger: CCCTTTGTCCCCCAAAGGATTCGTTAAATAGGACAAGCCTAGGATGGGGATTTGGAGGGTATTATTCCAGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000643706.1 |
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| CDS TCA 72 bp | TCTGATTCATGCCAACTCTCAGGCTTCCTCTCCTCTTaGCAATGTTTGGTTTTCCCTTCCACTGTGAGAGTT | + |
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Preference number: 6 (lower is better) Translates to: SDSCQLSGFLSS*QCLVFPSTVRV Trigger: AACTCTCACAGTGGAAGGGAAAACCAAACATTGTCAAGAGGAGAGGAAGCCTGAGAGTTGGCATGAATCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000646314.1 |
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| CDS GCA 72 bp | GGTGACTTTAGGGAACTGAACAATGGGTTTCTCACCTaGTACACAGTAAGGCCATCAATCAACAGTAACTCC | + |
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Preference number: 6 (lower is better) Translates to: GDFRELNNGFLT*YTVRPSINSNS Trigger: GGAGTTACTGTTGATTGATGGCCTTACTGTGTAGCAGGTGAGAAACCCATTGTTCAGTTCCCTAAAGTCACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000553704.3 ENST00000645956.1 |
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| CDS CCA 72 bp | GCTGGAGTGTTGCAGGTGCTTTCTTTTACTTCCTCATaGAGAGTTTCTGTGATTGTAGTCATAGTGCCATCT | + |
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Preference number: 6 (lower is better) Translates to: AGVLQVLSFTSS*RVSVIVVIVPS Trigger: AGATGGCACTATGACTACAATCACAGAAACTCTCCATGAGGAAGTAAAAGAAAGCACCTGCAACACTCCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000553704.3 ENST00000645956.1 |
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| CDS TCA 72 bp | TCTGATTCATGCCAACTCTCAGGCTTCCTCTCCTCTTaGCAATGTTTGGTTTTCCCTATTCAGGATATAGGA | + |
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Preference number: 6 (lower is better) Translates to: SDSCQLSGFLSS*QCLVFPIQDIG Trigger: TCCTATATCCTGAATAGGGAAAACCAAACATTGTCAAGAGGAGAGGAAGCCTGAGAGTTGGCATGAATCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000553704.3 ENST00000645956.1 |
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| CDS CCA 72 bp | CCATTCCTGAGACCTGGAAGAACTATAACTCATAAGTaGAGCAGGTATGAGATTGAGTCCACAACTTCAGAT | + |
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Preference number: 6 (lower is better) Translates to: PFLRPGRTITHK*SRYEIESTTSD Trigger: ATCTGAAGTTGTGGACTCAATCTCATACCTGCTCCACTTATGAGTTATAGTTCTTCCAGGTCTCAGGAATGG 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553704.3 |
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| CDS CCA 72 bp | AAAGCTTCCCAACTCTCCTGTCTGTATCTCATGTCATaGCAGGAAGCCAGTGTTTTCTCTGACTCTTTTAAA | + |
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Preference number: 6 (lower is better) Translates to: KASQLSCLYLMS*QEASVFSDSFK Trigger: TTTAAAAGAGTCAGAGAAAACACTGGCTTCCTGCCATGACATGAGATACAGACAGGAGAGTTGGGAAGCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000553704.3 ENST00000645956.1 |
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| CDS GCA 72 bp | TTCAACATTGCCAGTTTCCATGTTGAACCTTCATTCTaGCACAGTTATGTAACAGGAGCCCAAAGTAACAGT | + |
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Preference number: 6 (lower is better) Translates to: FNIASFHVEPSF*HSYVTGAQSNS Trigger: ACTGTTACTTTGGGCTCCTGTTACATAACTGTGGCAGAATGAAGGTTCAACATGGAAACTGGCAATGTTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553704.3 |
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| CDS TCA 72 bp | ATCGAGCTAATAATTATCCACCTTGCAGAGATGTTGTaGAGATTCCGTTGTGAAGATTCACACTTCCACTGT | + |
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Preference number: 6 (lower is better) Translates to: IELIIIHLAEML*RFRCEDSHFHC Trigger: ACAGTGGAAGTGTGAATCTTCACAACGGAATCTTCACAACATCTCTGCAAGGTGGATAATTATTAGCTCGAT 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000644805.1 |
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| CDS TCA 72 bp | TGTTTACCAGGACTTGAGGAAGGTTCATCTGAGCCTTaGTTTTCCCACTATGAAATCGAGCTAATAATTATC | + |
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Preference number: 6 (lower is better) Translates to: CLPGLEEGSSEP*FSHYEIELIII Trigger: GATAATTATTAGCTCGATTTCATAGTGGGAAAATCAAGGCTCAGATGAACCTTCCTCAAGTCCTGGTAAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000644805.1 |
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