Pregenerated sensors for LIN7B (Homo sapiens)
Ensembl gene IDs: ENSG00000104863Ensembl transcript IDs: ENST00000221459.7, ENST00000391864.7, ENST00000465141.1, ENST00000469137.5, ENST00000474252.1, ENST00000486217.2, ENST00000595200.5
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GTTGGCGCCGGCGGGCAGAGCGCATCTTCTCGAACCGGGCCTCCATCTCCTCCAACCCTGGGATGTGCGTaGCCCTCGCTGGCTGTGAAG | + |
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Preference number: 2 (lower is better) Translates to: VGAGGQSASSRTGPPSPPTLGCA*PSLAVK Trigger: CTTCACAGCCAGCGAGGGCCACGCACATCCCAGGGT...TGGAGGAGATGGAGGCCCGGTTCGAGAAGATGCGCTCTGCCCGCCGGCGCCAAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| 3UTR-3UTR CCA 90 bp | GTTGGCGCCGGCGGGCAGAGCGCATCTTCTCGAACCGGGCCTCCATCTCCTCCAGTAGCTCCACTACCCTaGGATGTGCGTGGCCCTCGC | + |
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Preference number: 2 (lower is better) Translates to: VGAGGQSASSRTGPPSPPVAPLP*DVRGPR Trigger: GCGAGGGCCACGCACATCCCAGGGTAGTGGAGCTAC...TGGAGGAGATGGAGGCCCGGTTCGAGAAGATGCGCTCTGCCCGCCGGCGCCAAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| 3UTR-3UTR CCA 90 bp | TGGCGCCGGCGGGCAGAGCGCATCTTCTCGAACCGGGCCTCCATCTCCTCCAGCGGCCCTCATCCGTCTTaGGTAGCTCCACTACCCTGG | + |
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Preference number: 2 (lower is better) Translates to: WRRRAERIFSNRASISSSGPHPS*VAPLPW Trigger: CCAGGGTAGTGGAGCTACCCAAGACGGATGAGGGCC...GCTGGAGGAGATGGAGGCCCGGTTCGAGAAGATGCGCTCTGCCCGCCGGCGCCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| 3UTR-3UTR TCA 90 bp | TCTGATGCTGTTGGCGCCGGCGGGCAGAGCGCATCTTCTCGAACCGGGCCTCCACCACACCCCCTGGGATaGCCCGGGAGATGTAGATGG | + |
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Preference number: 2 (lower is better) Translates to: SDAVGAGGQSASSRTGPPPHPLG*PGRCRW Trigger: CCATCTACATCTCCCGGGTCATCCCAGGGGGTGTGG...TGGAGGCCCGGTTCGAGAAGATGCGCTCTGCCCGCCGGCGCCAACAGCATCAGA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| 3UTR-3UTR CCA 90 bp | GCGGTGTGTAACGGACAACCAGCTTCACCGAGCCCTGGGCCGCCTTCAGCAGCTCCCGGGAGATGTAGATaGGCGAGTTTTGCTCTTTGC | + |
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Preference number: 2 (lower is better) Translates to: AVCNGQPASPSPGPPSAAPGRCR*ASFALC Trigger: GCAAAGAGCAAAACTCGCCCATCTACATCTCCCGGG...AGCTGCTGAAGGCGGCCCAGGGCTCGGTGAAGCTGGTTGTCCGTTACACACCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| 3UTR GCA 72 bp | CCCTGGGCCGCCTTCAGCAGCTCCACCGCCTTCTCATaGTGCTCACCCTCAACGCTCACACCGTTCACCGAC | + |
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Preference number: 3 (lower is better) Translates to: PWAAFSSSTAFS*CSPSTLTPFTD Trigger: GTCGGTGAACGGTGTGAGCGTTGAGGGTGAGCAGCATGAGAAGGCGGTGGAGCTGCTGAAGGCGGCCCAGGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| 3UTR-3UTR CAA 90 bp | CGGTGTGTAACGGACAACCAGCTTCACCGAGCCCTGGGCCGCCTTCAGCAGCTCGTTCACCGACAACAGTaGATCCCCACGCTTGAGGCC | + |
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Preference number: 3 (lower is better) Translates to: RCVTDNQLHRALGRLQQLVHRQQ*IPTLEA Trigger: GGCCTCAAGCGTGGGGATCAACTGTTGTCGGTGAAC...GAGCTGCTGAAGGCGGCCCAGGGCTCGGTGAAGCTGGTTGTCCGTTACACACCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| 3UTR TCA 72 bp | TCACACCGTTCACCGACAACAGTTGATCCCCACGCTTaGGGCCTCCATGGCGGTCAGCCACACCCCCTGGGA | + |
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Preference number: 3 (lower is better) Translates to: SHRSPTTVDPHA*GLHGGQPHPLG Trigger: TCCCAGGGGGTGTGGCTGACCGCCATGGAGGCCTCAAGCGTGGGGATCAACTGTTGTCGGTGAACGGTGTGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| 3UTR GCA 72 bp | TGGGCCGCCTTCAGCAGCTCCACCGCCTTCTCATGCTaGTCACCCTCAACGCTCACACCGTTCACCGACAAC | + |
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Preference number: 3 (lower is better) Translates to: WAAFSSSTAFSC*SPSTLTPFTDN Trigger: GTTGTCGGTGAACGGTGTGAGCGTTGAGGGTGAGCAGCATGAGAAGGCGGTGGAGCTGCTGAAGGCGGCCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| 3UTR-3UTR CAA 90 bp | GCGGTGTGTAACGGACAACCAGCTTCACCGAGCCCTGGGCCGCCTTCAGCAGCTTTGCCACCCATGATGTaGAAGCCTAGGCCCTCATCC | + |
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Preference number: 3 (lower is better) Translates to: AVCNGQPASPSPGPPSAALPPMM*KPRPSS Trigger: GGATGAGGGCCTAGGCTTCAACATCATGGGTGGCAA...AGCTGCTGAAGGCGGCCCAGGGCTCGGTGAAGCTGGTTGTCCGTTACACACCGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR GCA 90 bp | GTTGGCGCCGGCGGGCAGAGCGCATCTTCTCGAACCGGGCCTCCATCTCCTCCAGCGGCAGCTCCCCGCTaGGCTGGAGCCGCTCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: VGAGGQSASSRTGPPSPPAAAPR*AGAARG Trigger: TCCTCGAGCGGCTCCAGCGCAGCGGGGAGCTGCCGC...TGGAGGAGATGGAGGCCCGGTTCGAGAAGATGCGCTCTGCCCGCCGGCGCCAAC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR TCA 90 bp | GTTGGCGCCGGCGGGCAGAGCGCATCTTCTCGAACCGGGCCTCCATCTCCTCCAGTTGATCCCCACGCTTaGGGCCTCCATGGCGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: VGAGGQSASSRTGPPSPPVDPHA*GLHGGQ Trigger: CTGACCGCCATGGAGGCCTCAAGCGTGGGGATCAAC...TGGAGGAGATGGAGGCCCGGTTCGAGAAGATGCGCTCTGCCCGCCGGCGCCAAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR GCA 90 bp | CCTCATCCGTCTTGGGTAGCTCCACTACCCTGGGATGTGCGTGGCCCTCGCTGGACTCGCTGGAGGGCCTaGAGCTTCTGCGGCGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: PHPSWVAPLPWDVRGPRWTRWRA*SFCGGS Trigger: GCTGCCGCCGCAGAAGCTGCAGGCCCTCCAGCGAGT...CCAGCGAGGGCCACGCACATCCCAGGGTAGTGGAGCTACCCAAGACGGATGAGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR CCA 90 bp | GCGGTGTGTAACGGACAACCAGCTTCACCGAGCCCTGGGCCGCCTTCAGCAGCTAGCTCCCCGCTGCGCTaGAGCCGCTCGAGGAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: AVCNGQPASPSPGPPSAASSPLR*SRSRSS Trigger: TGAGCTCCTCGAGCGGCTCCAGCGCAGCGGGGAGCT...AGCTGCTGAAGGCGGCCCAGGGCTCGGTGAAGCTGGTTGTCCGTTACACACCGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR GCA 90 bp | AAGCCTAGGCCCTCATCCGTCTTGGGTAGCTCCACTACCCTGGGATGTGCGTGGAGGGCCTGCAGCTTCTaGGGCGGCAGCTCCCCGCTG | + |
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Preference number: 4 (lower is better) Translates to: KPRPSSVLGSSTTLGCAWRACSF*GGSSPL Trigger: CAGCGGGGAGCTGCCGCCGCAGAAGCTGCAGGCCCT...CCACGCACATCCCAGGGTAGTGGAGCTACCCAAGACGGATGAGGGCCTAGGCTT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR CCA 90 bp | CGGTGTGTAACGGACAACCAGCTTCACCGAGCCCTGGGCCGCCTTCAGCAGCTCAGCTTCACCGAGCCCTaGGCCGCCTTCAGCAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: RCVTDNQLHRALGRLQQLSFTEP*AAFSSS Trigger: GGAGCTGCTGAAGGCGGCCCAGGGCTCGGTGAAGCT...GAGCTGCTGAAGGCGGCCCAGGGCTCGGTGAAGCTGGTTGTCCGTTACACACCG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR TCA 90 bp | TTGATCCCCACGCTTGAGGCCTCCATGGCGGTCAGCCACACCCCCTGGGATGACCCACACCCCCTGGGATaGCCCGGGAGATGTAGATGG | + |
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Preference number: 4 (lower is better) Translates to: LIPTLEASMAVSHTPWDDPHPLG*PGRCRW Trigger: CCATCTACATCTCCCGGGTCATCCCAGGGGGTGTGG...GTCATCCCAGGGGGTGTGGCTGACCGCCATGGAGGCCTCAAGCGTGGGGATCAA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR GCA 90 bp | CTCGCGGTGTGTAACGGACAACCAGCTTCACCGAGCCCTGGGCCGCCTTCAGCAGAGCAGAAGCGGCTCTaGAGAACTCGCTGGAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: LAVCNGQPASPSPGPPSAEQKRL*RTRWRA Trigger: GGCCCTCCAGCGAGTTCTGCAGAGCCGCTTCTGCTC...TGCTGAAGGCGGCCCAGGGCTCGGTGAAGCTGGTTGTCCGTTACACACCGCGAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR GCA 90 bp | TTGATCCCCACGCTTGAGGCCTCCATGGCGGTCAGCCACACCCCCTGGGATGACCACTACCCTGGGATGTaGGTGGCCCTCGCTGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: LIPTLEASMAVSHTPWDDHYPGM*VALAGC Trigger: ACAGCCAGCGAGGGCCACGCACATCCCAGGGTAGTG...GTCATCCCAGGGGGTGTGGCTGACCGCCATGGAGGCCTCAAGCGTGGGGATCAA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR CCA 90 bp | TCTGATGCTGTTGGCGCCGGCGGGCAGAGCGCATCTTCTCGAACCGGGCCTCCACTCTGCAGAACTCGCTaGAGGGCCTGCAGCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: SDAVGAGGQSASSRTGPPLCRTR*RACSFC Trigger: GCAGAAGCTGCAGGCCCTCCAGCGAGTTCTGCAGAG...TGGAGGCCCGGTTCGAGAAGATGCGCTCTGCCCGCCGGCGCCAACAGCATCAGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR TCA 90 bp | GCACTCGCGGTGTGTAACGGACAACCAGCTTCACCGAGCCCTGGGCCGCCTTCATCTCGGCGCTGCCGGTaGTGTCCAGCGTGTCATAAA | + |
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Preference number: 4 (lower is better) Translates to: ALAVCNGQPASPSPGPPSSRRCR*CPACHK Trigger: TTTATGACACGCTGGACATCACCGGCAGCGCCGAGA...TGAAGGCGGCCCAGGGCTCGGTGAAGCTGGTTGTCCGTTACACACCGCGAGTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR GCA 90 bp | CCCTCATCCGTCTTGGGTAGCTCCACTACCCTGGGATGTGCGTGGCCCTCGCTGTCCACCGCCTTCTCATaGTGCTCACCCTCAACGCTC | + |
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Preference number: 4 (lower is better) Translates to: PSSVLGSSTTLGCAWPSLSTAFS*CSPSTL Trigger: GAGCGTTGAGGGTGAGCAGCATGAGAAGGCGGTGGA...CAGCGAGGGCCACGCACATCCCAGGGTAGTGGAGCTACCCAAGACGGATGAGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR TCA 90 bp | CGGTGTGTAACGGACAACCAGCTTCACCGAGCCCTGGGCCGCCTTCAGCAGCTCTTCACCGACAACAGTTaGTCCCCACGCTTGAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: RCVTDNQLHRALGRLQQLFTDNS*SPRLRP Trigger: AGGCCTCAAGCGTGGGGATCAACTGTTGTCGGTGAA...GAGCTGCTGAAGGCGGCCCAGGGCTCGGTGAAGCTGGTTGTCCGTTACACACCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR GCA 90 bp | GCACTCGCGGTGTGTAACGGACAACCAGCTTCACCGAGCCCTGGGCCGCCTTCAACCGCCTTCTCATGCTaGTCACCCTCAACGCTCACA | + |
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Preference number: 4 (lower is better) Translates to: ALAVCNGQPASPSPGPPSTAFSC*SPSTLT Trigger: TGTGAGCGTTGAGGGTGAGCAGCATGAGAAGGCGGT...TGAAGGCGGCCCAGGGCTCGGTGAAGCTGGTTGTCCGTTACACACCGCGAGTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR CCA 90 bp | TCCACCGCCTTCTCATGCTGCTCACCCTCAACGCTCACACCGTTCACCGACAACACCCTGGGATGTGCGTaGCCCTCGCTGGCTGTGAAG | + |
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Preference number: 4 (lower is better) Translates to: STAFSCCSPSTLTPFTDNTLGCA*PSLAVK Trigger: CTTCACAGCCAGCGAGGGCCACGCACATCCCAGGGT...GTTGTCGGTGAACGGTGTGAGCGTTGAGGGTGAGCAGCATGAGAAGGCGGTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR CCA 90 bp | TCCACCGCCTTCTCATGCTGCTCACCCTCAACGCTCACACCGTTCACCGACAACGTAGCTCCACTACCCTaGGATGTGCGTGGCCCTCGC | + |
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Preference number: 4 (lower is better) Translates to: STAFSCCSPSTLTPFTDNVAPLP*DVRGPR Trigger: GCGAGGGCCACGCACATCCCAGGGTAGTGGAGCTAC...GTTGTCGGTGAACGGTGTGAGCGTTGAGGGTGAGCAGCATGAGAAGGCGGTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| 3UTR CAA 72 bp | CTCACCCTCAACGCTCACACCGTTCACCGACAACAGTaGATCCCCACGCTTGAGGCCTCCATGGCGGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: LTLNAHTVHRQQ*IPTLEASMAVS Trigger: GCTGACCGCCATGGAGGCCTCAAGCGTGGGGATCAACTGTTGTCGGTGAACGGTGTGAGCGTTGAGGGTGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR CCA 90 bp | GCTGCTCACCCTCAACGCTCACACCGTTCACCGACAACAGTTGATCCCCACGCTGGCCCTCATCCGTCTTaGGTAGCTCCACTACCCTGG | + |
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Preference number: 4 (lower is better) Translates to: AAHPQRSHRSPTTVDPHAGPHPS*VAPLPW Trigger: CCAGGGTAGTGGAGCTACCCAAGACGGATGAGGGCC...AGCGTGGGGATCAACTGTTGTCGGTGAACGGTGTGAGCGTTGAGGGTGAGCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR CCA 90 bp | TCCGTCTTGGGTAGCTCCACTACCCTGGGATGTGCGTGGCCCTCGCTGGCTGTGCCCGGGAGATGTAGATaGGCGAGTTTTGCTCTTTGC | + |
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Preference number: 4 (lower is better) Translates to: SVLGSSTTLGCAWPSLAVPGRCR*ASFALC Trigger: GCAAAGAGCAAAACTCGCCCATCTACATCTCCCGGG...CACAGCCAGCGAGGGCCACGCACATCCCAGGGTAGTGGAGCTACCCAAGACGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR CCA 90 bp | TTGATCCCCACGCTTGAGGCCTCCATGGCGGTCAGCCACACCCCCTGGGATGACTGTATTTCTTGGCTGTaGCATGGGCTCGGATCTCGG | + |
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Preference number: 4 (lower is better) Translates to: LIPTLEASMAVSHTPWDDCISWL*HGLGSR Trigger: CCGAGATCCGAGCCCATGCCACAGCCAAGAAATACA...GTCATCCCAGGGGGTGTGGCTGACCGCCATGGAGGCCTCAAGCGTGGGGATCAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS CCA 90 bp | CGCTGGAGGGCCTGCAGCTTCTGCGGCGGCAGCTCCCCGCTGCGCTaGAGCCGCTCGAGGAGCTCAACCGCCCGGGACACGTCCCGCTCC | + |
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Preference number: 5 (lower is better) Translates to: RWRACSFCGGSSPLR*SRSRSSTARDTSRS Trigger: GGAGCGGGACGTGTCCCGGGCGGTTGAGCTCCTCGAGCGGCTCCAGCGCAGCGGGGAGCTGCCGCCGCAGAAGCTGCAGGCCCTCCAGCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000221459.7 ENST00000391864.7 ENST00000486217.2 ENST00000595200.5 |
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| CDS CCA 90 bp | CGCTGGAGGGCCTGCAGCTTCTGCGGCGGCAGCTCCCCGCTGCGCTaGAGCCGCTCGAGGAGCTCAACCGCCCGGGACACGTCTGCGGGG | + |
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Preference number: 5 (lower is better) Translates to: RWRACSFCGGSSPLR*SRSRSSTARDTSAG Trigger: CCCCGCAGACGTGTCCCGGGCGGTTGAGCTCCTCGAGCGGCTCCAGCGCAGCGGGGAGCTGCCGCCGCAGAAGCTGCAGGCCCTCCAGCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000469137.5 |
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| CDS GCA 90 bp | GAACTCGCTGGAGGGCCTGCAGCTTCTGCGGCGGCAGCTCCCCGCTaGGCTGGAGCCGCTCGAGGAGCTCAACCGCCCGGGACACGTCCC | + |
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Preference number: 5 (lower is better) Translates to: ELAGGPAASAAAAPR*AGAARGAQPPGTRP Trigger: GGGACGTGTCCCGGGCGGTTGAGCTCCTCGAGCGGCTCCAGCGCAGCGGGGAGCTGCCGCCGCAGAAGCTGCAGGCCCTCCAGCGAGTTC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000221459.7 ENST00000391864.7 ENST00000486217.2 ENST00000595200.5 |
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| CDS GCA 90 bp | GAACTCGCTGGAGGGCCTGCAGCTTCTGCGGCGGCAGCTCCCCGCTaGGCTGGAGCCGCTCGAGGAGCTCAACCGCCCGGGACACGTCTG | + |
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Preference number: 5 (lower is better) Translates to: ELAGGPAASAAAAPR*AGAARGAQPPGTRL Trigger: CAGACGTGTCCCGGGCGGTTGAGCTCCTCGAGCGGCTCCAGCGCAGCGGGGAGCTGCCGCCGCAGAAGCTGCAGGCCCTCCAGCGAGTTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000469137.5 |
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| CDS GCA 90 bp | GAGCAGAAGCGGCTCTGCAGAACTCGCTGGAGGGCCTGCAGCTTCTaGGGCGGCAGCTCCCCGCTGCGCTGGAGCCGCTCGAGGAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: EQKRLCRTRWRACSF*GGSSPLRWSRSRSS Trigger: TGAGCTCCTCGAGCGGCTCCAGCGCAGCGGGGAGCTGCCGCCGCAGAAGCTGCAGGCCCTCCAGCGAGTTCTGCAGAGCCGCTTCTGCTC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000221459.7 ENST00000391864.7 ENST00000469137.5 ENST00000486217.2 ENST00000595200.5 |
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| CDS CCA 90 bp | TACACCTCTCGGATAGCGGAGCAGAAGCGGCTCTGCAGAACTCGCTaGAGGGCCTGCAGCTTCTGCGGCGGCAGCTCCCCGCTGCGCTGG | + |
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Preference number: 5 (lower is better) Translates to: YTSRIAEQKRLCRTR*RACSFCGGSSPLRW Trigger: CCAGCGCAGCGGGGAGCTGCCGCCGCAGAAGCTGCAGGCCCTCCAGCGAGTTCTGCAGAGCCGCTTCTGCTCCGCTATCCGAGAGGTGTA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000221459.7 ENST00000391864.7 ENST00000469137.5 ENST00000486217.2 ENST00000595200.5 |
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| CDS-3UTR CAA 90 bp | GCGGTGTGTAACGGACAACCAGCTTCACCGAGCCCTGGGCCGCCTTCAGCAGCTAGGCCCTCATCCGTCTaGGGTAGCTCCACTACCCTG | + |
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Preference number: 5 (lower is better) Translates to: AVCNGQPASPSPGPPSAARPSSV*GSSTTL Trigger: CAGGGTAGTGGAGCTACCCAAGACGGATGAGGGCCT...AGCTGCTGAAGGCGGCCCAGGGCTCGGTGAAGCTGGTTGTCCGTTACACACCGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR CAA 90 bp | GTCTTGGGTAGCTCCACTACCCTGGGATGTGCGTGGCCCTCGCTGGCTGTGAAGGTTCACCGACAACAGTaGATCCCCACGCTTGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: VLGSSTTLGCAWPSLAVKVHRQQ*IPTLEA Trigger: GGCCTCAAGCGTGGGGATCAACTGTTGTCGGTGAAC...CTTCACAGCCAGCGAGGGCCACGCACATCCCAGGGTAGTGGAGCTACCCAAGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR CAA 90 bp | CTAGGCCCTCATCCGTCTTGGGTAGCTCCACTACCCTGGGATGTGCGTGGCCCTTTGCCACCCATGATGTaGAAGCCTAGGCCCTCATCC | + |
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Preference number: 5 (lower is better) Translates to: LGPHPSWVAPLPWDVRGPLPPMM*KPRPSS Trigger: GGATGAGGGCCTAGGCTTCAACATCATGGGTGGCAA...AGGGCCACGCACATCCCAGGGTAGTGGAGCTACCCAAGACGGATGAGGGCCTAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS-3UTR CAA 90 bp | TCCGTCTTGGGTAGCTCCACTACCCTGGGATGTGCGTGGCCCTCGCTGGCTGTGGTAGATGGGCGAGTTTaGCTCTTTGCCACCCATGAT | + |
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Preference number: 5 (lower is better) Translates to: SVLGSSTTLGCAWPSLAVVDGRV*LFATHD Trigger: ATCATGGGTGGCAAAGAGCAAAACTCGCCCATCTAC...CACAGCCAGCGAGGGCCACGCACATCCCAGGGTAGTGGAGCTACCCAAGACGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595200.5 |
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| CDS CCA 90 bp | GAGATATTGAGTTCGACTAGGCAGTTAAATAGACACCAGGAGCAATaGGGTGCGGGGCCCACCTTGGCTGTGGCATGGGCTCGGATCTCG | + |
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Preference number: 5 (lower is better) Translates to: EILSSTRQLNRHQEQ*GAGPTLAVAWARIS Trigger: CGAGATCCGAGCCCATGCCACAGCCAAGGTGGGCCCCGCACCCCATTGCTCCTGGTGTCTATTTAACTGCCTAGTCGAACTCAATATCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000486217.2 |
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| CDS GCA 72 bp | GGAGGGCCTGCAGCTTCTGCGGCGGCAGCTCCCCGCTaGGCTGGAGCCGCTCGAGGAGCTCAACCGCCCGGG | + |
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Preference number: 6 (lower is better) Translates to: GGPAASAAAAPR*AGAARGAQPPG Trigger: CCCGGGCGGTTGAGCTCCTCGAGCGGCTCCAGCGCAGCGGGGAGCTGCCGCCGCAGAAGCTGCAGGCCCTCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000221459.7 ENST00000391864.7 ENST00000469137.5 ENST00000486217.2 ENST00000595200.5 |
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| CDS CCA 72 bp | GCCTGCAGCTTCTGCGGCGGCAGCTCCCCGCTGCGCTaGAGCCGCTCGAGGAGCTCAACCGCCCGGGACACG | + |
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Preference number: 6 (lower is better) Translates to: ACSFCGGSSPLR*SRSRSSTARDT Trigger: CGTGTCCCGGGCGGTTGAGCTCCTCGAGCGGCTCCAGCGCAGCGGGGAGCTGCCGCCGCAGAAGCTGCAGGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000221459.7 ENST00000391864.7 ENST00000469137.5 ENST00000486217.2 ENST00000595200.5 |
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| CDS GCA 72 bp | CGGCTCTGCAGAACTCGCTGGAGGGCCTGCAGCTTCTaGGGCGGCAGCTCCCCGCTGCGCTGGAGCCGCTCG | + |
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Preference number: 6 (lower is better) Translates to: RLCRTRWRACSF*GGSSPLRWSRS Trigger: CGAGCGGCTCCAGCGCAGCGGGGAGCTGCCGCCGCAGAAGCTGCAGGCCCTCCAGCGAGTTCTGCAGAGCCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000221459.7 ENST00000391864.7 ENST00000469137.5 ENST00000486217.2 ENST00000595200.5 |
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| CDS TCA 72 bp | ACCCCGAGACGCAGAGAAGCAAGGAGAGCGGCGGAGTaGGGCCGAGCGCACAGTCCGGGGAGGACGGCCGAA | + |
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Preference number: 6 (lower is better) Translates to: TPRRREARRAAE*GRAHSPGRTAE Trigger: TTCGGCCGTCCTCCCCGGACTGTGCGCTCGGCCTCACTCCGCCGCTCTCCTTGCTTCTCTGCGTCTCGGGGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000469137.5 |
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| CDS CCA 72 bp | CGGATAGCGGAGCAGAAGCGGCTCTGCAGAACTCGCTaGAGGGCCTGCAGCTTCTGCGGCGGCAGCTCCCCG | + |
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Preference number: 6 (lower is better) Translates to: RIAEQKRLCRTR*RACSFCGGSSP Trigger: CGGGGAGCTGCCGCCGCAGAAGCTGCAGGCCCTCCAGCGAGTTCTGCAGAGCCGCTTCTGCTCCGCTATCCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000221459.7 ENST00000391864.7 ENST00000469137.5 ENST00000486217.2 ENST00000595200.5 |
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| CDS CCA 72 bp | ATAGACACCAGGAGCAATGGGGTGCGGGGCCCACCTTaGCTGTGGCATGGGCTCGGATCTCGGCGCTGCCGG | + |
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Preference number: 6 (lower is better) Translates to: IDTRSNGVRGPP*LWHGLGSRRCR Trigger: CCGGCAGCGCCGAGATCCGAGCCCATGCCACAGCCAAGGTGGGCCCCGCACCCCATTGCTCCTGGTGTCTAT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000486217.2 |
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| CDS CAA 72 bp | AATAGACACCAGGAGCAATGGGGTGCGGGGCCCACCTaGGCTGTGGCATGGGCTCGGATCTCGGCGCTGCCG | + |
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Preference number: 6 (lower is better) Translates to: NRHQEQWGAGPT*AVAWARISALP Trigger: CGGCAGCGCCGAGATCCGAGCCCATGCCACAGCCAAGGTGGGCCCCGCACCCCATTGCTCCTGGTGTCTATT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000486217.2 |
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| CDS GCA 72 bp | CCCTGGGCCGCCTTCAGCAGCTCCACCGCCTTCTCATaGTGCTCACCCTCAACGCTCTTGGCTGTGGCATGG | + |
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Preference number: 6 (lower is better) Translates to: PWAAFSSSTAFS*CSPSTLLAVAW Trigger: CCATGCCACAGCCAAGAGCGTTGAGGGTGAGCAGCATGAGAAGGCGGTGGAGCTGCTGAAGGCGGCCCAGGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000391864.7 |
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| CDS GCA 72 bp | TCATACACCTCTCGGATAGCGGAGCAGAAGCGGCTCTaGAGAACTCGCTGGAGGGCCTGCAGCTTCTGCGGC | + |
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Preference number: 6 (lower is better) Translates to: SYTSRIAEQKRL*RTRWRACSFCG Trigger: GCCGCAGAAGCTGCAGGCCCTCCAGCGAGTTCTGCAGAGCCGCTTCTGCTCCGCTATCCGAGAGGTGTATGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000221459.7 ENST00000391864.7 ENST00000469137.5 ENST00000486217.2 ENST00000595200.5 |
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| CDS CAA 72 bp | ACCTCGAGACTCCAAGGACGAGTAGCTCTGATGCTGTaGGCGCCGGCGGGCAGAGCGCATCTTCTCGAACCG | + |
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Preference number: 6 (lower is better) Translates to: TSRLQGRVALML*APAGRAHLLEP Trigger: CGGTTCGAGAAGATGCGCTCTGCCCGCCGGCGCCAACAGCATCAGAGCTACTCGTCCTTGGAGTCTCGAGGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000221459.7 ENST00000391864.7 ENST00000469137.5 |
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| CDS TCA 72 bp | TGGCTGTGGCATGGGCTCGGATCTCGGCGCTGCCGGTaGTGTCCAGCGTGTCATAAAGCTGCTCATACACCT | + |
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Preference number: 6 (lower is better) Translates to: WLWHGLGSRRCR*CPACHKAAHTP Trigger: AGGTGTATGAGCAGCTTTATGACACGCTGGACATCACCGGCAGCGCCGAGATCCGAGCCCATGCCACAGCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000221459.7 ENST00000391864.7 ENST00000469137.5 ENST00000474252.1 ENST00000486217.2 ENST00000595200.5 |
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| CDS CCA 72 bp | AGTTCGACTAGGCAGTTAAATAGACACCAGGAGCAATaGGGTGCGGGGCCCACCTTGGCTGTGGCATGGGCT | + |
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Preference number: 6 (lower is better) Translates to: SSTRQLNRHQEQ*GAGPTLAVAWA Trigger: AGCCCATGCCACAGCCAAGGTGGGCCCCGCACCCCATTGCTCCTGGTGTCTATTTAACTGCCTAGTCGAACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000486217.2 |
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| CDS CCA 72 bp | GGGTGGGGGATGTGGACCGAGGACAGCGATTTAGCCTaGGTTACTATCCCCAAGCATGGGACACTTGTCATG | + |
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Preference number: 6 (lower is better) Translates to: GWGMWTEDSDLA*VTIPKHGTLVM Trigger: CATGACAAGTGTCCCATGCTTGGGGATAGTAACCCAGGCTAAATCGCTGTCCTCGGTCCACATCCCCCACCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000465141.1 |
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