Pregenerated sensors for LHFPL3 (Homo sapiens)
Ensembl gene IDs: ENSG00000187416Ensembl transcript IDs: ENST00000401970.2, ENST00000401970.3, ENST00000424859.6, ENST00000424859.7, ENST00000683240.1, ENST00000684090.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CACGGCTCCTATGAAAACATTCAGAGGCATTTTCTAAGATGCTTCCTCAATAAATCTGATCTCATCCAATaGGTTTCCAATGAGCTGGTG | + |
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Preference number: 2 (lower is better) Translates to: HGSYENIQRHFLRCFLNKSDLIQ*VSNELV Trigger: CACCAGCTCATTGGAAACTCATTGGATGAGATCAGA...TTTATTGAGGAAGCATCTTAGAAAATGCCTCTGAATGTTTTCATAGGAGCCGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000401970.2 ENST00000424859.6 |
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| 3UTR-3UTR CCA 90 bp | CACGGCTCCTATGAAAACATTCAGAGGCATTTTCTAAGATGCTTCCTCAATAAATTAGCAGAAATGGTGTaGTCTCACACTACCTTAGTT | + |
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Preference number: 2 (lower is better) Translates to: HGSYENIQRHFLRCFLNKLAEMV*SHTTLV Trigger: AACTAAGGTAGTGTGAGACCACACCATTTCTGCTAA...TTTATTGAGGAAGCATCTTAGAAAATGCCTCTGAATGTTTTCATAGGAGCCGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000401970.2 |
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| 3UTR-3UTR TCA 90 bp | CACGGCTCCTATGAAAACATTCAGAGGCATTTTCTAAGATGCTTCCTCAATAAATTCATGAACGTTTTCTaGTCTCATCCAATGAGTTTC | + |
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Preference number: 2 (lower is better) Translates to: HGSYENIQRHFLRCFLNKFMNVF*SHPMSF Trigger: GAAACTCATTGGATGAGATCAGAAAACGTTCATGAA...TTTATTGAGGAAGCATCTTAGAAAATGCCTCTGAATGTTTTCATAGGAGCCGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000401970.2 ENST00000424859.6 |
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| 3UTR-3UTR CCA 90 bp | TCTGCTGATCTAGATTTAGAAAGTGCGTTGACAAGTGAATGTTCCATTCTTGTTCATTCTAGAGAATATTaGCTTAGCAGAAATGGTGTG | + |
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Preference number: 2 (lower is better) Translates to: SADLDLESALTSECSILVHSREY*LSRNGV Trigger: CACACCATTTCTGCTAAGCCAATATTCTCTAGAATG...AACAAGAATGGAACATTCACTTGTCAACGCACTTTCTAAATCTAGATCAGCAGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000401970.2 |
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| 3UTR CAA 90 bp | TCATATTCATCTATATACTCTGATCTCTCTCAGGCGTATTCCTTCTaGATGTTGATGTACAAAAGCTGTTATTCGATTCGTTTAGCTGTT | + |
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Preference number: 2 (lower is better) Translates to: SYSSIYSDLSQAYSF*MLMYKSCYSIRLAV Trigger: AACAGCTAAACGAATCGAATAACAGCTTTTGTACATCAACATCAAGAAGGAATACGCCTGAGAGAGATCAGAGTATATAGATGAATATGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000401970.2 ENST00000424859.6 |
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| 3UTR-3UTR CAA 90 bp | CACGGCTCCTATGAAAACATTCAGAGGCATTTTCTAAGATGCTTCCTCAATAAACAGGCGTATTCCTTCTaGATGTTGATGTACAAAAGC | + |
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Preference number: 3 (lower is better) Translates to: HGSYENIQRHFLRCFLNKQAYSF*MLMYKS Trigger: GCTTTTGTACATCAACATCAAGAAGGAATACGCCTG...TTTATTGAGGAAGCATCTTAGAAAATGCCTCTGAATGTTTTCATAGGAGCCGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000401970.2 ENST00000424859.6 |
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| 3UTR TCA 72 bp | ATTCAGAGGCATTTTCTAAGATGCTTCCTCAATAAATaGCGCTTGATCAGCCTCTTGGCTATTGAGATAGGA | + |
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Preference number: 3 (lower is better) Translates to: IQRHFLRCFLNK*RLISLLAIEIG Trigger: TCCTATCTCAATAGCCAAGAGGCTGATCAAGCGTCATTTATTGAGGAAGCATCTTAGAAAATGCCTCTGAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000401970.2 ENST00000424859.6 |
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| 3UTR CAA 72 bp | ACTCCCATCTCTGCTGATCTAGATTTAGAAAGTGCGTaGACAAGTGAATGTTCCATTCTTGTTCATATTCAT | + |
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Preference number: 4 (lower is better) Translates to: TPISADLDLESA*TSECSILVHIH Trigger: ATGAATATGAACAAGAATGGAACATTCACTTGTCAACGCACTTTCTAAATCTAGATCAGCAGAGATGGGAGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000401970.2 ENST00000424859.6 |
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| CDS GCA 90 bp | CCGCCTCTCAGCGCGCAGGAGACACACTCACGGAGCCTCGCGCGCTaGAACTCCCCTGCCTCCGCCTCAGCCCAGCAGCACCAGTTTCAG | + |
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Preference number: 5 (lower is better) Translates to: PPLSAQETHSRSLAR*NSPASASAQQHQFQ Trigger: CTGAAACTGGTGCTGCTGGGCTGAGGCGGAGGCAGGGGAGTTGCAGCGCGCGAGGCTCCGTGAGTGTGTCTCCTGCGCGCTGAGAGGCGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000401970.3 ENST00000424859.7 |
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| CDS GCA 90 bp | AATATTGGCTTAGCAGAAATGGTGTGGTCTCACACTACCTTAGTTTaGCTTAAGCATTTCCATCATCTTTGTTTTCTGCCTTCAGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: NIGLAEMVWSHTTLV*LKHFHHLCFLPSVP Trigger: AGGAACTGAAGGCAGAAAACAAAGATGATGGAAATGCTTAAGGCAAACTAAGGTAGTGTGAGACCACACCATTTCTGCTAAGCCAATATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000401970.3 |
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| CDS GCA 90 bp | TTCTCCTTAGGTATAGAACATGGTTTGGCTTCCATTAAGTACCCTTaGATGTATTTTAGCTTGTGTTCATTCTCAGGCAATGGGCTATTT | + |
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Preference number: 5 (lower is better) Translates to: FSLGIEHGLASIKYP*MYFSLCSFSGNGLF Trigger: AAATAGCCCATTGCCTGAGAATGAACACAAGCTAAAATACATGCAAGGGTACTTAATGGAAGCCAAACCATGTTCTATACCTAAGGAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000424859.7 ENST00000683240.1 ENST00000684090.1 |
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| CDS TCA 90 bp | GTGATTTACATGTGTATTACCTATATACAAATGGTACATCGTCAATaGCCCATCTTCAGAGCACTGTGGTATGCTAAATTACACTTAGGT | + |
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Preference number: 5 (lower is better) Translates to: VIYMCITYIQMVHRQ*PIFRALWYAKLHLG Trigger: ACCTAAGTGTAATTTAGCATACCACAGTGCTCTGAAGATGGGTCATTGACGATGTACCATTTGTATATAGGTAATACACATGTAAATCAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000424859.7 ENST00000683240.1 ENST00000684090.1 |
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| CDS CAA 72 bp | AGCATCATGGAGAGGCCGATAAAGAAGGAGGCGGCTTaGAAGGCGCCCGAGGGCAGCGTGGAGAAGTCCGTG | + |
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Preference number: 6 (lower is better) Translates to: SIMERPIKKEAA*KAPEGSVEKSV Trigger: CACGGACTTCTCCACGCTGCCCTCGGGCGCCTTCAAAGCCGCCTCCTTCTTTATCGGCCTCTCCATGATGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000401970.3 ENST00000424859.7 ENST00000683240.1 |
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| CDS CAA 90 bp | GCAATGATGAGCATCATGGAGAGGCCGATAAAGAAGGAGGCGGCTTaGAAGGCGCCCGAGGGCAGCGTGGAGAAGTCCGTGAAGCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: AMMSIMERPIKKEAA*KAPEGSVEKSVKLP Trigger: GGGCAGCTTCACGGACTTCTCCACGCTGCCCTCGGGCGCCTTCAAAGCCGCCTCCTTCTTTATCGGCCTCTCCATGATGCTCATCATTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000401970.3 ENST00000424859.7 ENST00000683240.1 |
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| CDS GCA 72 bp | AAGATTTTACGTAGGTGTGATCTTTCGGAGGTGAGCTaGATCCAGGCACATATCTTGTACACAGTGGCCGTG | + |
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Preference number: 6 (lower is better) Translates to: KILRRCDLSEVS*IQAHILYTVAV Trigger: CACGGCCACTGTGTACAAGATATGTGCCTGGATGCAGCTCACCTCCGAAAGATCACACCTACGTAAAATCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000683240.1 |
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| CDS GCA 72 bp | ATTTCCATCATCTTTGTTTTCTGCCTTCAGTTCCTCTaGCATCAAGCTGTCTTGTCGATTACCAAGCACAAA | + |
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Preference number: 6 (lower is better) Translates to: ISIIFVFCLQFL*HQAVLSITKHK Trigger: TTTGTGCTTGGTAATCGACAAGACAGCTTGATGGCAGAGGAACTGAAGGCAGAAAACAAAGATGATGGAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000401970.3 |
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| CDS CAA 90 bp | AACAGAGAGAGGGTAAGAGAAGTGAACCCTGATCTGTATCACTTCTaGTGTTATCCTCCATCTGATGTTCTAGTGATATACACTGATTTG | + |
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Preference number: 6 (lower is better) Translates to: NRERVREVNPDLYHF*CYPPSDVLVIYTDL Trigger: CAAATCAGTGTATATCACTAGAACATCAGATGGAGGATAACACAAGAAGTGATACAGATCAGGGTTCACTTCTCTTACCCTCTCTCTGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000424859.7 ENST00000683240.1 ENST00000684090.1 |
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| CDS CAA 72 bp | AGGGTAAGAGAAGTGAACCCTGATCTGTATCACTTCTaGTGTTATCCTCCATCTGATGTTCTAGTGATATAC | + |
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Preference number: 6 (lower is better) Translates to: RVREVNPDLYHF*CYPPSDVLVIY Trigger: GTATATCACTAGAACATCAGATGGAGGATAACACAAGAAGTGATACAGATCAGGGTTCACTTCTCTTACCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000424859.7 ENST00000683240.1 ENST00000684090.1 |
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| CDS TCA 72 bp | ATGTGTATTACCTATATACAAATGGTACATCGTCAATaGCCCATCTTCAGAGCACTGTGGTATGCTAAATTA | + |
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Preference number: 6 (lower is better) Translates to: MCITYIQMVHRQ*PIFRALWYAKL Trigger: TAATTTAGCATACCACAGTGCTCTGAAGATGGGTCATTGACGATGTACCATTTGTATATAGGTAATACACAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000424859.7 ENST00000683240.1 ENST00000684090.1 |
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