RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LGR4 (Homo sapiens)

Ensembl gene IDs: ENSG00000205213

Ensembl transcript IDs: ENST00000379214.9, ENST00000389858.4, ENST00000480977.2, ENST00000489910.1, ENST00000527773.1, ENST00000530658.1

Found 237 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTAACACTGATTTTGGTTaGCGGGGGAAACGGTTACAC +
Preference number: 2 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFNTDFG*RGKRLH
Trigger: GTGTAACCGTTTCCCCCGTCAACCAAAATCAGTGTT...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
3UTR-3UTR TCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTGAAGTGCTTCCCAGATaGAAGATGAGAATAGGGTTC +
Preference number: 2 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFEVLPR*KMRIGF
Trigger: GAACCCTATTCTCATCTTTCATCTGGGAAGCACTTC...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
3UTR-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTAGTGACACCAGGCAGTaGTTACAGAAGTGCTTCCCA +
Preference number: 2 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVSDTRQ*LQKCFP
Trigger: TGGGAAGCACTTCTGTAATCACTGCCTGGTGTCACT...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
3UTR-3UTR TCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTTCTCCTTCTTCTAAGTaGCACCAGGCAGTGATTACA +
Preference number: 2 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFSPSSK*HQAVIT
Trigger: TGTAATCACTGCCTGGTGTCACTTAGAAGAAGGAGA...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
3UTR-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTAACACTGATTTTGGTTaGCGGGGGAAACGGTTACAC +
Preference number: 2 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVNTDFG*RGKRLH
Trigger: GTGTAACCGTTTCCCCCGTCAACCAAAATCAGTGTT...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
3UTR-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTTCACTCTATAAACACTaGTTTTGGTTGACGGGGGAA +
Preference number: 2 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVSLYKH*FWLTGE
Trigger: TTCCCCCGTCAACCAAAATCAGTGTTTATAGAGTGA...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
3UTR-3UTR CCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTGACATCCCAGCAAATTaGAAAATATTAGTAGAGCCA +
Preference number: 2 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVDIPAN*KILVEP
Trigger: TGGCTCTACTAATATTTTCCAATTTGCTGGGATGTC...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
3UTR-3UTR CAA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTCAGATCATACATTGCTaGGACATTGCATTTTTCACC +
Preference number: 3 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFQIIHC*DIAFFT
Trigger: GGTGAAAAATGCAATGTCCAAGCAATGTATGATCTG...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
3UTR-3UTR CAA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCTTAGGCACCTGTTCTTaGAAAATGACTGGTTTGAGA +
Preference number: 3 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLLGTCS*KMTGLR
Trigger: TCTCAAACCAGTCATTTTCAAAGAACAGGTGCCTAA...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
3UTR-3UTR CAA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCTTGAAAATGACTGGTTaGAGAAATAAACTGCCACCT +
Preference number: 3 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLLKMTG*RNKLPP
Trigger: AGGTGGCAGTTTATTTCTCAAACCAGTCATTTTCAA...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTCGCAGCCTTCAGCCATaGCGGCCACTCGCCCCAGCC +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFRSLQP*RPLAPA
Trigger: GGCTGGGGCGAGTGGCCGGCATGGCTGAAGGCTGCG...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTGGTCGCCGTCGCAGCTaGAGGGCGCCGCGCAGAGAG +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFGRRRS*RAPRRE
Trigger: CTCTCTGCGCGGCGCCCTGCAGCTGCGACGGCGACC...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTGCGGGGGCCGCGCTCTaGCATCGCACCGGTCTCCCT +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVAGAAL*HRTGLP
Trigger: AGGGAGACCGGTGCGATGGCAGAGCGCGGCCCCCGC...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCGCGGGGGCCGCGCTCTaGCATCGCACCGGTCTCCCT +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLAGAAL*HRTGLP
Trigger: AGGGAGACCGGTGCGATGGCAGAGCGCGGCCCCCGC...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCCGCTGCTCGCTCCGCTaGCCTCCGATGTCCCCCGCC +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLRCSLR*PPMSPA
Trigger: GGCGGGGGACATCGGAGGGCAGCGGAGCGAGCAGCG...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTCGCTGCTCGCTCCGCTaGCCTCCGATGTCCCCCGCC +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVRCSLR*PPMSPA
Trigger: GGCGGGGGACATCGGAGGGCAGCGGAGCGAGCAGCG...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTGGTCGCCGTCGCAGCTaGAGGGCGCCGCGCAGAGAG +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVGRRRS*RAPRRE
Trigger: CTCTCTGCGCGGCGCCCTGCAGCTGCGACGGCGACC...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTCTTCCCGCTGCTCCATaGACGCGCAGAGGCAGCCCC +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFLPAAP*TRRGSP
Trigger: GGGGCTGCCTCTGCGCGTCCATGGAGCAGCGGGAAG...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTAGCCGGCCTGCGGGCTaGAGCGGGGGTCTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVSRPAG*SGGLFL
Trigger: GAGGAAGAGACCCCCGCTCCAGCCCGCAGGCCGGCT...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCAGCCGGCCTGCGGGCTaGAGCGGGGGTCTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLSRPAG*SGGLFL
Trigger: GAGGAAGAGACCCCCGCTCCAGCCCGCAGGCCGGCT...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTCGGTCTCCCTGTCCCTaGCCTCTCAATGCAGCGGCT +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFRSPCP*PLNAAA
Trigger: AGCCGCTGCATTGAGAGGCCAGGGACAGGGAGACCG...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTGCGGCTCTTCAAGGTTaGAGAGCGCAGCCTTCAGCC +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFAALQG*RAQPSA
Trigger: GGCTGAAGGCTGCGCTCTGCAACCTTGAAGAGCCGC...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTCGGTCTCCCTGTCCCTaGCCTCTCAATGCAGCGGCT +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFRSPCP*PLNAAA
Trigger: AGCCGCTGCATTGAGAGGCCAGGGACAGGGAGACCG...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTCTGATATCCAGCGCTTaGGTGAAGGCGCTGAGCCCC +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFLISSA*VKALSP
Trigger: GGGGCTCAGCGCCTTCACCCAAGCGCTGGATATCAG...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379214.9
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTGCGGCTCTTCAAGGTTaGAGAGCGCAGCCTTCAGCC +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFAALQG*RAQPSA
Trigger: GGCTGAAGGCTGCGCTCTGCAACCTTGAAGAGCCGC...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTTTTCGCCCTTCCCGCTaGTCCATGGACGCGCAGAGG +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVFRPSR*SMDAQR
Trigger: CCTCTGCGCGTCCATGGAGCAGCGGGAAGGGCGAAA...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTAGTGGGCCGACTGTGTaGCACAGTCGGACCAGTAGC +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFSGPTV*HSRTSS
Trigger: GCTACTGGTCCGACTGTGGCACACAGTCGGCCCACT...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTTGCTTGAGATCTTGTTaGGAGCCAGGGTCAGCGCCT +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFCLRSC*EPGSAP
Trigger: AGGCGCTGACCCTGGCTCTCAACAAGATCTCAAGCA...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCAGTGGGCCGACTGTGTaGCACAGTCGGACCAGTAGC +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLSGPTV*HSRTSS
Trigger: GCTACTGGTCCGACTGTGGCACACAGTCGGCCCACT...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTCAAACACCCAGACTCTaGCTCGCTGTCTCCCAGCCG +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVQTPRL*LAVSQP
Trigger: CGGCTGGGAGACAGCGAGCCAGAGTCTGGGTGTTTG...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCCAAACACCCAGACTCTaGCTCGCTGTCTCCCAGCCG +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLQTPRL*LAVSQP
Trigger: CGGCTGGGAGACAGCGAGCCAGAGTCTGGGTGTTTG...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTGCCAATTGTAGCGCTTaGGTGAAGGCGCTGAGCCCC +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVANCSA*VKALSP
Trigger: GGGGCTCAGCGCCTTCACCCAAGCGCTACAATTGGC...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000389858.4
CDS-3UTR TCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTACTGTCCTCGGGGACTaGGGTAATATGGTTGGCATC +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFTVLGD*GNMVGI
Trigger: GATGCCAACCATATTACCTCAGTCCCCGAGGACAGT...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTTCCCTGGCCTCTCAATaGAGCGGCTCTTCAAGGTTG +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFSLASQ*SGSSRL
Trigger: CAACCTTGAAGAGCCGCTGCATTGAGAGGCCAGGGA...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTAGATTGGGGAACTGCTaGACCATGCTTGCACCACGA +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFRLGNC*TMLAPR
Trigger: TCGTGGTGCAAGCATGGTGCAGCAGTTCCCCAATCT...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTGAAACCCAGCTACTTTaGAGCCACTGCCAGTTTCCC +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFETQLL*SHCQFP
Trigger: GGGAAACTGGCAGTGGCTGCAAAGTAGCTGGGTTTC...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCGCTCGTCCACAGGCCTaGACCTGGTCAGAACTGTCT +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLARPQA*TWSELS
Trigger: AGACAGTTCTGACCAGGTGCAGGCCTGTGGACGAGC...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTCCACAGGCCTGCACCTaGTCAGAACTGTCTGAGACA +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFPQACT*SELSET
Trigger: TGTCTCAGACAGTTCTGACCAGGTGCAGGCCTGTGG...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCTGCTTGAGATCTTGTTaGGAGCCAGGGTCAGCGCCT +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLCLRSC*EPGSAP
Trigger: AGGCGCTGACCCTGGCTCTCAACAAGATCTCAAGCA...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTGTTGCCCTGCAAATGTaGGTACATGCCACAGTCGTA +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFVALQM*VHATVV
Trigger: TACGACTGTGGCATGTACTCACATTTGCAGGGCAAC...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTAGTGACACCAGGCAGTaGTTACAGAAGTGCTTCCCA +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFSDTRQ*LQKCFP
Trigger: TGGGAAGCACTTCTGTAATCACTGCCTGGTGTCACT...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCTCCCTGGCCTCTCAATaGAGCGGCTCTTCAAGGTTG +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLSLASQ*SGSSRL
Trigger: CAACCTTGAAGAGCCGCTGCATTGAGAGGCCAGGGA...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTAGTACCTTTCTCCTGTaGCACACTGTGGTCCTGGAG +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFSTFLL*HTVVLE
Trigger: CTCCAGGACCACAGTGTGGCACAGGAGAAAGGTACT...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTGAAACCCAGCTACTTTaGAGCCACTGCCAGTTTCCC +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFETQLL*SHCQFP
Trigger: GGGAAACTGGCAGTGGCTGCAAAGTAGCTGGGTTTC...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTTTGGCAAGAAGCCACTaGCAATGCAGGACAGCTGTG +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFLARSH*QCRTAV
Trigger: CACAGCTGTCCTGCATTGGCAGTGGCTTCTTGCCAA...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTTCCTGTGCCACACTGTaGTCCTGGAGGCTGTTATCT +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFSCATL*SWRLLS
Trigger: AGATAACAGCCTCCAGGACCACAGTGTGGCACAGGA...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCCCACAGGCCTGCACCTaGTCAGAACTGTCTGAGACA +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLPQACT*SELSET
Trigger: TGTCTCAGACAGTTCTGACCAGGTGCAGGCCTGTGG...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTCAACCCGGAACTGTTTaGGATGATTGCTCTTCCCAT +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFQPGTV*DDCSSH
Trigger: ATGGGAAGAGCAATCATCTCAAACAGTTCCGGGTTG...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTGTTGCCCTGCAAATGTaGGTACATGCCACAGTCGTA +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFVALQM*VHATVV
Trigger: TACGACTGTGGCATGTACTCACATTTGCAGGGCAAC...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTAGTGACACCAGGCAGTaGTTACAGAAGTGCTTCCCA +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFSDTRQ*LQKCFP
Trigger: TGGGAAGCACTTCTGTAATCACTGCCTGGTGTCACT...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTAGATTGGGGAACTGCTaGACCATGCTTGCACCACGA +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVRLGNC*TMLAPR
Trigger: TCGTGGTGCAAGCATGGTGCAGCAGTTCCCCAATCT...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTGTAAGATTGGGGAACTaGTGCACCATGCTTGCACCA +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFVRLGN*CTMLAP
Trigger: TGGTGCAAGCATGGTGCAGCAGTTCCCCAATCTTAC...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCAGTACCTTTCTCCTGTaGCACACTGTGGTCCTGGAG +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLSTFLL*HTVVLE
Trigger: CTCCAGGACCACAGTGTGGCACAGGAGAAAGGTACT...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTCTACTTTGCAGCCACTaGCAGTTTCCCACCAAATGC +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFLLCSH*QFPTKC
Trigger: GCATTTGGTGGGAAACTGGCAGTGGCTGCAAAGTAG...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTCGCAAACAGTCAGGTTaGCCTGCAAATGTGAGTACA +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFRKQSG*PANVST
Trigger: TGTACTCACATTTGCAGGGCAACCTGACTGTTTGCG...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCTTGGCAAGAAGCCACTaGCAATGCAGGACAGCTGTG +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLLARSH*QCRTAV
Trigger: CACAGCTGTCCTGCATTGGCAGTGGCTTCTTGCCAA...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTGCCACACTGTGGTCCTaGAGGCTGTTATCTTCTGTG +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVATLWS*RLLSSV
Trigger: CACAGAAGATAACAGCCTCCAGGACCACAGTGTGGC...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCGCCACACTGTGGTCCTaGAGGCTGTTATCTTCTGTG +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLATLWS*RLLSSV
Trigger: CACAGAAGATAACAGCCTCCAGGACCACAGTGTGGC...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTTCCTGTGCCACACTGTaGTCCTGGAGGCTGTTATCT +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVSCATL*SWRLLS
Trigger: AGATAACAGCCTCCAGGACCACAGTGTGGCACAGGA...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTAAAGTCAGGGATGCTTaGGATCTTGTTGAGAGCCAG +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFKVRDA*DLVESQ
Trigger: CTGGCTCTCAACAAGATCTCAAGCATCCCTGACTTT...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTCCCACAAGTTTCAGTTaGTTTAGCCCATTCAGGCCT +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFPTSFS*FSPFRP
Trigger: AGGCCTGAATGGGCTAAATCAACTGAAACTTGTGGG...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTTGGCAAACAAAGGGGTaGTGCAGAATATTCCCCTCT +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFWQTKG*CRIFPS
Trigger: AGAGGGGAATATTCTGCATCACCCCTTTGTTTGCCA...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTAACACTGATTTTGGTTaGCGGGGGAAACGGTTACAC +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFNTDFG*RGKRLH
Trigger: GTGTAACCGTTTCCCCCGTCAACCAAAATCAGTGTT...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCGTAAGATTGGGGAACTaGTGCACCATGCTTGCACCA +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLVRLGN*CTMLAP
Trigger: TGGTGCAAGCATGGTGCAGCAGTTCCCCAATCTTAC...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTCGCAAACAGTCAGGTTaGCCTGCAAATGTGAGTACA +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFRKQSG*PANVST
Trigger: TGTACTCACATTTGCAGGGCAACCTGACTGTTTGCG...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTGACAAGGCCTTTGGGTaGATAAAAGAAAGGTCGTTG +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFDKAFG*IKERSL
Trigger: CAACGACCTTTCTTTTATCCACCCAAAGGCCTTGTC...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTCCCAGACAAGGCCTTTaGGTGGATAAAAGAAAGGTC +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFPRQGL*VDKRKV
Trigger: GACCTTTCTTTTATCCACCCAAAGGCCTTGTCTGGG...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCCACTCAGCCCTCGAATaGCTTCACTGGGTACTGTTT +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLHSALE*LHWVLF
Trigger: AAACAGTACCCAGTGAAGCCATTCGAGGGCTGAGTG...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTCACTCAGCCCTCGAATaGCTTCACTGGGTACTGTTT +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVHSALE*LHWVLF
Trigger: AAACAGTACCCAGTGAAGCCATTCGAGGGCTGAGTG...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTGAAAACATACAGGACTaGATTCAGGCAAGCAGGCAA +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFENIQD*IQASRQ
Trigger: TTGCCTGCTTGCCTGAATCCAGTCCTGTATGTTTTC...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTCACAGATGCCGTAACTaGACAAGTCCTTCAAAACTG +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFHRCRN*TSPSKL
Trigger: CAGTTTTGAAGGACTTGTTCAGTTACGGCATCTGTG...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTAAAGTCAGGGATGCTTaGGATCTTGTTGAGAGCCAG +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVKVRDA*DLVESQ
Trigger: CTGGCTCTCAACAAGATCTCAAGCATCCCTGACTTT...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTAGAGATATCAGGCCTTaGAAGGTGCCTTCCTTTATT +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFRDIRP*KVPSFI
Trigger: AATAAAGGAAGGCACCTTTCAAGGCCTGATATCTCT...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCCCCACAAGTTTCAGTTaGTTTAGCCCATTCAGGCCT +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLPTSFS*FSPFRP
Trigger: AGGCCTGAATGGGCTAAATCAACTGAAACTTGTGGG...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTTTTGGACGAAGGCAGTaGTGTACAAGATGCAAATGT +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFFGRRQ*CTRCKC
Trigger: ACATTTGCATCTTGTACATCACTGCCTTCGTCCAAA...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
40% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCCAACCCGGAACTGTTTaGGATGATTGCTCTTCCCAT +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLQPGTV*DDCSSH
Trigger: ATGGGAAGAGCAATCATCTCAAACAGTTCCGGGTTG...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTCTGGTCAGAACTGTCTaGGACAAAGGAATCTTCTTC +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFLVRTV*DKGIFF
Trigger: GAAGAAGATTCCTTTGTCTCAGACAGTTCTGACCAG...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTTCACTCTATAAACACTaGTTTTGGTTGACGGGGGAA +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFSLYKH*FWLTGE
Trigger: TTCCCCCGTCAACCAAAATCAGTGTTTATAGAGTGA...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTGCTTGTGACATTTGCTaGATCAGCAGTACCTTTCTC +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFACDIC*ISSTFL
Trigger: GAGAAAGGTACTGCTGATGCAGCAAATGTCACAAGC...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCCAAATTCAGCGAATCTaGCCCAGGACACAGCATCAA +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLQIQRI*PRTQHQ
Trigger: TTGATGCTGTGTCCTGGGGCAGATTCGCTGAATTTG...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTCAGTTTCCCACCAAATaGCAAATTCAGCGAATCTGC +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFQFPTK*QIQRIC
Trigger: GCAGATTCGCTGAATTTGGCATTTGGTGGGAAACTG...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTGGGGCTGATAGAGATTaGAGTGATCAATGGTGCAAA +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFGADRD*SDQWCK
Trigger: TTTGCACCATTGATCACTGCAATCTCTATCAGCCCC...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCACAGTCAGGTTGCCCTaGAAATGTGAGTACATGCCA +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLTVRLP*KCEYMP
Trigger: TGGCATGTACTCACATTTGCAGGGCAACCTGACTGT...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTACAGTCAGGTTGCCCTaGAAATGTGAGTACATGCCA +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVTVRLP*KCEYMP
Trigger: TGGCATGTACTCACATTTGCAGGGCAACCTGACTGT...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTCCCAGACAAGGCCTTTaGGTGGATAAAAGAAAGGTC +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVPRQGL*VDKRKV
Trigger: GACCTTTCTTTTATCCACCCAAAGGCCTTGTCTGGG...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTGTCAGACTTTCCAGGTaGACAGTTCCTGTAAGATTG +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFVRLSR*TVPVRL
Trigger: CAATCTTACAGGAACTGTCCACCTGGAAAGTCTGAC...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTTCCAGACAACCACCTTaGCTACTGATGGAAACTGAA +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFSRQPP*LLMETE
Trigger: TTCAGTTTCCATCAGTAGCCAAGGTGGTTGTCTGGA...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTGCATCTTCTGGCAACTaGGTAATGTTGTTCATACTG +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFASSGN*VMLFIL
Trigger: CAGTATGAACAACATTACTCAGTTGCCAGAAGATGC...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379214.9
CDS-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTGGAGCGTTAGAACTTTaGGTTCTTTCAACCCAGACA +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVGALEL*VLSTQT
Trigger: TGTCTGGGTTGAAAGAACTCAAAGTTCTAACGCTCC...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCGGAGCGTTAGAACTTTaGGTTCTTTCAACCCAGACA +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLGALEL*VLSTQT
Trigger: TGTCTGGGTTGAAAGAACTCAAAGTTCTAACGCTCC...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTCACAGATGCCGTAACTaGACAAGTCCTTCAAAACTG +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVHRCRN*TSPSKL
Trigger: CAGTTTTGAAGGACTTGTTCAGTTACGGCATCTGTG...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCAGGGCTTTAATAGCCTaGGGAAATTCCCCCAAGTTA +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLRALIA*GNSPKL
Trigger: TAACTTGGGGGAATTTCCTCAGGCTATTAAAGCCCT...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTAGGGCTTTAATAGCCTaGGGAAATTCCCCCAAGTTA +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVRALIA*GNSPKL
Trigger: TAACTTGGGGGAATTTCCTCAGGCTATTAAAGCCCT...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTAGATCAGATAAATTGTaGAATGCTGAGTTCCCCACA +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFRSDKL*NAEFPT
Trigger: TGTGGGGAACTCAGCATTTCACAATTTATCTGATCT...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTAGGCTTCTTTCAGCTTaGAGTTGCCCACAAGTTTCA +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVRLLSA*SCPQVS
Trigger: TGAAACTTGTGGGCAACTTCAAGCTGAAAGAAGCCT...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCAGGCTTCTTTCAGCTTaGAGTTGCCCACAAGTTTCA +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLRLLSA*SCPQVS
Trigger: TGAAACTTGTGGGCAACTTCAAGCTGAAAGAAGCCT...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTTTTCAAGAGTGCTTGTaGCATTTGCTGCATCAGCAG +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVFQECL*HLLHQQ
Trigger: CTGCTGATGCAGCAAATGTCACAAGCACTCTTGAAA...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTCGGAACTGTTTGAGATaGTTGCTCTTCCCATTTTTC +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFRNCLR*LLFPFF
Trigger: GAAAAATGGGAAGAGCAATCATCTCAAACAGTTCCG...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTAAAAGATGCAATTGGTaGAGATTAGCCAAGCGACAT +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFKRCNW*RLAKRH
Trigger: ATGTCGCTTGGCTAATCTTCACCAATTGCATCTTTT...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCAACCACCTTGGCTACTaGTGGAAACTGAAACTGATC +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLNHLGY*WKLKLI
Trigger: GATCAGTTTCAGTTTCCATCAGTAGCCAAGGTGGTT...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTAACCACCTTGGCTACTaGTGGAAACTGAAACTGATC +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVNHLGY*WKLKLI
Trigger: GATCAGTTTCAGTTTCCATCAGTAGCCAAGGTGGTT...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTTGCAGGACAGCTGTGTaGTTTTATCAAGTGTTTGCA +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFCRTAV*FYQVFA
Trigger: TGCAAACACTTGATAAAATCACACAGCTGTCCTGCA...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTCTGGTCAGAACTGTCTaGGACAAAGGAATCTTCTTC +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVLVRTV*DKGIFF
Trigger: GAAGAAGATTCCTTTGTCTCAGACAGTTCTGACCAG...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTTCACTCTATAAACACTaGTTTTGGTTGACGGGGGAA +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFSLYKH*FWLTGE
Trigger: TTCCCCCGTCAACCAAAATCAGTGTTTATAGAGTGA...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTGAAGTGCTTCCCAGATaGAAGATGAGAATAGGGTTC +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVEVLPR*KMRIGF
Trigger: GAACCCTATTCTCATCTTTCATCTGGGAAGCACTTC...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCTCTCCTTCTTCTAAGTaGCACCAGGCAGTGATTACA +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLSPSSK*HQAVIT
Trigger: TGTAATCACTGCCTGGTGTCACTTAGAAGAAGGAGA...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTTCTCCTTCTTCTAAGTaGCACCAGGCAGTGATTACA +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVSPSSK*HQAVIT
Trigger: TGTAATCACTGCCTGGTGTCACTTAGAAGAAGGAGA...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCCAAGCTATTGCTAGGTaGCATCCCAGCAAATTGGAA +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLQAIAR*HPSKLE
Trigger: TTCCAATTTGCTGGGATGTCACCTAGCAATAGCTTG...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTTGGATTACCATCAAATaGTCCATCAGGGATAACAGA +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFWITIK*SIRDNR
Trigger: TCTGTTATCCCTGATGGAGCATTTGATGGTAATCCA...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTTCAGGCCTTGAAAGGTaGCTTCCTTTATTTGGTAGA +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFSGLER*LPLFGR
Trigger: TCTACCAAATAAAGGAAGGCACCTTTCAAGGCCTGA...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTGTCACAACCCCAAAATaGACAGCACTGATAAGCATA +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFVTTPK*TALISI
Trigger: TATGCTTATCAGTGCTGTGCATTTTGGGGTTGTGAC...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCGCTTGTGACATTTGCTaGATCAGCAGTACCTTTCTC +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLACDIC*ISSTFL
Trigger: GAGAAAGGTACTGCTGATGCAGCAAATGTCACAAGC...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTCAGTTTCCCACCAAATaGCAAATTCAGCGAATCTGC +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVQFPTK*QIQRIC
Trigger: GCAGATTCGCTGAATTTGGCATTTGGTGGGAAACTG...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTGCAAATGTGAGTACATaGCACAGTCGTAGTAGAAAT +
Preference number: 4 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFANVST*HSRSRN
Trigger: ATTTCTACTACGACTGTGGCATGTACTCACATTTGC...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTGGAATCTTCTTCATCTaGATAATCAGAGTGGGCCGA +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVGIFFI*IIRVGR
Trigger: TCGGCCCACTCTGATTATGCAGATGAAGAAGATTCC...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTGACAAGGCCTTTGGGTaGATAAAAGAAAGGTCGTTG +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVDKAFG*IKERSL
Trigger: CAACGACCTTTCTTTTATCCACCCAAAGGCCTTGTC...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTCTCGAATGGCTTCACTaGGTACTGTTTTCAACTGAT +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFLEWLH*VLFSTD
Trigger: ATCAGTTGAAAACAGTACCCAGTGAAGCCATTCGAG...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTGTCAGACTTTCCAGGTaGACAGTTCCTGTAAGATTG +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVVRLSR*TVPVRL
Trigger: CAATCTTACAGGAACTGTCCACCTGGAAAGTCTGAC...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTTTATTGGCCCAAGTGTaGCAAAAGCTCTACTGTGAA +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFLLAQV*QKLYCE
Trigger: TTCACAGTAGAGCTTTTGCCACACTTGGGCCAATAA...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
39% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTGAAAACATACAGGACTaGATTCAGGCAAGCAGGCAA +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVENIQD*IQASRQ
Trigger: TTGCCTGCTTGCCTGAATCCAGTCCTGTATGTTTTC...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCAGAGATATCAGGCCTTaGAAGGTGCCTTCCTTTATT +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLRDIRP*KVPSFI
Trigger: AATAAAGGAAGGCACCTTTCAAGGCCTGATATCTCT...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCTTTGGACGAAGGCAGTaGTGTACAAGATGCAAATGT +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLFGRRQ*CTRCKC
Trigger: ACATTTGCATCTTGTACATCACTGCCTTCGTCCAAA...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTCGGAACTGTTTGAGATaGTTGCTCTTCCCATTTTTC +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVRNCLR*LLFPFF
Trigger: GAAAAATGGGAAGAGCAATCATCTCAAACAGTTCCG...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCGCACTAACGTTACAGTaGATCCTAATGATGGCGTTT +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLALTLQ*ILMMAF
Trigger: AAACGCCATCATTAGGATTCACTGTAACGTTAGTGC...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTGCACTAACGTTACAGTaGATCCTAATGATGGCGTTT +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVALTLQ*ILMMAF
Trigger: AAACGCCATCATTAGGATTCACTGTAACGTTAGTGC...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTTGCAGGACAGCTGTGTaGTTTTATCAAGTGTTTGCA +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVCRTAV*FYQVFA
Trigger: TGCAAACACTTGATAAAATCACACAGCTGTCCTGCA...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTTCAGGCCTTGAAAGGTaGCTTCCTTTATTTGGTAGA +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVSGLER*LPLFGR
Trigger: TCTACCAAATAAAGGAAGGCACCTTTCAAGGCCTGA...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCGTCACAACCCCAAAATaGACAGCACTGATAAGCATA +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLVTTPK*TALISI
Trigger: TATGCTTATCAGTGCTGTGCATTTTGGGGTTGTGAC...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTGCAAATGTGAGTACATaGCACAGTCGTAGTAGAAAT +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFANVST*HSRSRN
Trigger: ATTTCTACTACGACTGTGGCATGTACTCACATTTGC...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCCTCGAATGGCTTCACTaGGTACTGTTTTCAACTGAT +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLLEWLH*VLFSTD
Trigger: ATCAGTTGAAAACAGTACCCAGTGAAGCCATTCGAG...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCTTATTGGCCCAAGTGTaGCAAAAGCTCTACTGTGAA +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLLLAQV*QKLYCE
Trigger: TTCACAGTAGAGCTTTTGCCACACTTGGGCCAATAA...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTGGTACTGTTTTCAACTaGTTATTCTGGAGCGTTAGA +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVGTVFN*LFWSVR
Trigger: TCTAACGCTCCAGAATAATCAGTTGAAAACAGTACC...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTCCATCAAAACAGTGTTaGCTCAGGCTTCTAATTTTA +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFPSKQC*LRLLIL
Trigger: TAAAATTAGAAGCCTGAGTCAACACTGTTTTGATGG...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCAGATCAGATAAATTGTaGAATGCTGAGTTCCCCACA +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLRSDKL*NAEFPT
Trigger: TGTGGGGAACTCAGCATTTCACAATTTATCTGATCT...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTCTTAAAAGCACCTGTTaGAGGTGTACAATGGATAAT +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFLKSTC*RCTMDN
Trigger: ATTATCCATTGTACACCTTCAACAGGTGCTTTTAAG...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCAAAAGATGCAATTGGTaGAGATTAGCCAAGCGACAT +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLKRCNW*RLAKRH
Trigger: ATGTCGCTTGGCTAATCTTCACCAATTGCATCTTTT...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTTGGATTACCATCAAATaGTCCATCAGGGATAACAGA +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVWITIK*SIRDNR
Trigger: TCTGTTATCCCTGATGGAGCATTTGATGGTAATCCA...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTATTAGCCAAGCGACATaGTTAATCATGCTAGATTGT +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFISQAT*LIMLDC
Trigger: ACAATCTAGCATGATTAAGCATGTCGCTTGGCTAAT...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCCCATCAAAACAGTGTTaGCTCAGGCTTCTAATTTTA +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLPSKQC*LRLLIL
Trigger: TAAAATTAGAAGCCTGAGTCAACACTGTTTTGATGG...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCGCAAAAGCTCTACTGTaGATTTCATGTATCAGGTTT +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLAKALL*ISCIRF
Trigger: AAACCTGATACATGAAATTCACAGTAGAGCTTTTGC...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR TCA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTGCAAAAGCTCTACTGTaGATTTCATGTATCAGGTTT +
Preference number: 4 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVAKALL*ISCIRF
Trigger: AAACCTGATACATGAAATTCACAGTAGAGCTTTTGC...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR GCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCATTAGCCAAGCGACATaGTTAATCATGCTAGATTGT +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLISQAT*LIMLDC
Trigger: ACAATCTAGCATGATTAAGCATGTCGCTTGGCTAAT...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CCA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTCTTAAATGCATCTTCTaGCAACTGAGTAATGTTGTT +
Preference number: 4 (lower is better)
Translates to: SASQMKDENRVHSINTDFLKCIF*QLSNVV
Trigger: AACAACATTACTCAGTTGCCAGAAGATGCATTTAAG...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379214.9
CDS-3UTR CCA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCGACATCCCAGCAAATTaGAAAATATTAGTAGAGCCA +
Preference number: 4 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLDIPAN*KILVEP
Trigger: TGGCTCTACTAATATTTTCCAATTTGCTGGGATGTC...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 90 bp GCAGCGGCGCAGGGACGCGGCGCTCCGGAGTTTCGCCCTTCCCGCTaGTCCATGGACGCGCAGAGGCAGCCCCGCTCCTCCGGCGGCTCA +
Preference number: 5 (lower is better)
Translates to: AAAQGRGAPEFRPSR*SMDAQRQPRSSGGS
Trigger: TGAGCCGCCGGAGGAGCGGGGCTGCCTCTGCGCGTCCATGGAGCAGCGGGAAGGGCGAAACTCCGGAGCGCCGCGTCCCTGCGCCGCTGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CCA 90 bp CGCAGGGACGCGGCGCTCCGGAGTTTCGCCCTTCCCGCTGCTCCATaGACGCGCAGAGGCAGCCCCGCTCCTCCGGCGGCTCACGCCAGC +
Preference number: 5 (lower is better)
Translates to: RRDAALRSFALPAAP*TRRGSPAPPAAHAS
Trigger: GCTGGCGTGAGCCGCCGGAGGAGCGGGGCTGCCTCTGCGCGTCCATGGAGCAGCGGGAAGGGCGAAACTCCGGAGCGCCGCGTCCCTGCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CCA 90 bp AGCGGCGGGGGCCGCGCTCTGCCATCGCACCGGTCTCCCTGTCCCTaGCCTCTCAATGCAGCGGCTCTTCAAGGTTGCAGAGCGCAGCCT +
Preference number: 5 (lower is better)
Translates to: SGGGRALPSHRSPCP*PLNAAALQGCRAQP
Trigger: AGGCTGCGCTCTGCAACCTTGAAGAGCCGCTGCATTGAGAGGCCAGGGACAGGGAGACCGGTGCGATGGCAGAGCGCGGCCCCCGCCGCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 90 bp CGGTCTCCCTGTCCCTGGCCTCTCAATGCAGCGGCTCTTCAAGGTTaGAGAGCGCAGCCTTCAGCCATGCCGGCCACTCGCCCCAGCCCC +
Preference number: 5 (lower is better)
Translates to: RSPCPWPLNAAALQG*RAQPSAMPATRPSP
Trigger: GGGGCTGGGGCGAGTGGCCGGCATGGCTGAAGGCTGCGCTCTGCAACCTTGAAGAGCCGCTGCATTGAGAGGCCAGGGACAGGGAGACCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CCA 90 bp CTCGCCCCAGCCCCCGCCGTGGCTCTCGCACAAACACCCAGACTCTaGCTCGCTGTCTCCCAGCCGCGGCTCAATCTCTTCCCGTCCTTT +
Preference number: 5 (lower is better)
Translates to: LAPAPAVALAQTPRL*LAVSQPRLNLFPSF
Trigger: AAAGGACGGGAAGAGATTGAGCCGCGGCTGGGAGACAGCGAGCCAGAGTCTGGGTGTTTGTGCGAGAGCCACGGCGGGGGCTGGGGCGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 90 bp TCAATGCAGCGGCTCTTCAAGGTTGCAGAGCGCAGCCTTCAGCCATaGCGGCCACTCGCCCCAGCCCCCGCCGTGGCTCTCGCACAAACA +
Preference number: 5 (lower is better)
Translates to: SMQRLFKVAERSLQP*RPLAPAPAVALAQT
Trigger: TGTTTGTGCGAGAGCCACGGCGGGGGCTGGGGCGAGTGGCCGGCATGGCTGAAGGCTGCGCTCTGCAACCTTGAAGAGCCGCTGCATTGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 90 bp CCGCGCTCTGCCATCGCACCGGTCTCCCTGTCCCTGGCCTCTCAATaGAGCGGCTCTTCAAGGTTGCAGAGCGCAGCCTTCAGCCATGCC +
Preference number: 5 (lower is better)
Translates to: PRSAIAPVSLSLASQ*SGSSRLQSAAFSHA
Trigger: GGCATGGCTGAAGGCTGCGCTCTGCAACCTTGAAGAGCCGCTGCATTGAGAGGCCAGGGACAGGGAGACCGGTGCGATGGCAGAGCGCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS TCA 90 bp GTAGAAGCAGGCTCGTCCACAGGCCTGCACCTGGTCAGAACTGTCTaGGACAAAGGAATCTTCTTCATCTGCATAATCAGAGTGGGCCGA +
Preference number: 5 (lower is better)
Translates to: VEAGSSTGLHLVRTV*DKGIFFICIIRVGR
Trigger: TCGGCCCACTCTGATTATGCAGATGAAGAAGATTCCTTTGTCTCAGACAGTTCTGACCAGGTGCAGGCCTGTGGACGAGCCTGCTTCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 90 bp CGCAGCAGTCGCAAACAGTCAGGTTGCCCTGCAAATGTGAGTACATaGCACAGTCGTAGTAGAAATCCTGTTCCAGACAACCACCTTGGC +
Preference number: 5 (lower is better)
Translates to: RSSRKQSGCPANVST*HSRSRNPVPDNHLG
Trigger: GCCAAGGTGGTTGTCTGGAACAGGATTTCTACTACGACTGTGGCATGTACTCACATTTGCAGGGCAACCTGACTGTTTGCGACTGCTGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 90 bp CAAAGGAATCTTCTTCATCTGCATAATCAGAGTGGGCCGACTGTGTaGCACAGTCGGACCAGTAGCCCTCAGGTCTTTGGCAAGAAGCCA +
Preference number: 5 (lower is better)
Translates to: QRNLLHLHNQSGPTV*HSRTSSPQVFGKKP
Trigger: TGGCTTCTTGCCAAAGACCTGAGGGCTACTGGTCCGACTGTGGCACACAGTCGGCCCACTCTGATTATGCAGATGAAGAAGATTCCTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 90 bp CAAGAAACCCAGCTACTTTGCAGCCACTGCCAGTTTCCCACCAAATaGCAAATTCAGCGAATCTGCCCCAGGACACAGCATCAAGAAAAG +
Preference number: 5 (lower is better)
Translates to: QETQLLCSHCQFPTK*QIQRICPRTQHQEK
Trigger: CTTTTCTTGATGCTGTGTCCTGGGGCAGATTCGCTGAATTTGGCATTTGGTGGGAAACTGGCAGTGGCTGCAAAGTAGCTGGGTTTCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS TCA 90 bp AAACGATTCGCAGCAGTCGCAAACAGTCAGGTTGCCCTGCAAATGTaGGTACATGCCACAGTCGTAGTAGAAATCCTGTTCCAGACAACC +
Preference number: 5 (lower is better)
Translates to: KRFAAVANSQVALQM*VHATVVVEILFQTT
Trigger: GGTTGTCTGGAACAGGATTTCTACTACGACTGTGGCATGTACTCACATTTGCAGGGCAACCTGACTGTTTGCGACTGCTGCGAATCGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 90 bp TGCAGCCACTGCCAGTTTCCCACCAAATGCCAAATTCAGCGAATCTaGCCCAGGACACAGCATCAAGAAAAGTTAGGATGCCAGTATAGA +
Preference number: 5 (lower is better)
Translates to: CSHCQFPTKCQIQRI*PRTQHQEKLGCQYR
Trigger: TCTATACTGGCATCCTAACTTTTCTTGATGCTGTGTCCTGGGGCAGATTCGCTGAATTTGGCATTTGGTGGGAAACTGGCAGTGGCTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 90 bp ATATGGCACTTTCTGAGGAGAAAACTGCAAGAAACCCAGCTACTTTaGAGCCACTGCCAGTTTCCCACCAAATGCCAAATTCAGCGAATC +
Preference number: 5 (lower is better)
Translates to: IWHFLRRKLQETQLL*SHCQFPTKCQIQRI
Trigger: GATTCGCTGAATTTGGCATTTGGTGGGAAACTGGCAGTGGCTGCAAAGTAGCTGGGTTTCTTGCAGTTTTCTCCTCAGAAAGTGCCATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CCA 90 bp GGTTGGCATCTAAACGCAAAGACTGCAAAGCACTCAGCCCTCGAATaGCTTCACTGGGTACTGTTTTCAACTGATTATTCTGGAGCGTTA +
Preference number: 5 (lower is better)
Translates to: GWHLNAKTAKHSALE*LHWVLFSTDYSGAL
Trigger: TAACGCTCCAGAATAATCAGTTGAAAACAGTACCCAGTGAAGCCATTCGAGGGCTGAGTGCTTTGCAGTCTTTGCGTTTAGATGCCAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTACTGATATCCAGCGCTaGGGTGAAGGCGCTGAGCCC +
Preference number: 5 (lower is better)
Translates to: SASQMKDENRVHSINTDFTDIQR*GEGAEP
Trigger: GGGCTCAGCGCCTTCACCCAAGCGCTGGATATCAGT...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000379214.9
CDS-3UTR CAA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTTGTAGGGTGGGCAGATaGCTGAGGGGGTGCACAGGC +
Preference number: 5 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVCRVGR*LRGCTG
Trigger: GCCTGTGCACCCCCTCAGCAATCTGCCCACCCTACA...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 90 bp GCTTTGTTAAAAGAAACGATTCGCAGCAGTCGCAAACAGTCAGGTTaGCCTGCAAATGTGAGTACATGCCACAGTCGTAGTAGAAATCCT +
Preference number: 5 (lower is better)
Translates to: ALLKETIRSSRKQSG*PANVSTCHSRSRNP
Trigger: AGGATTTCTACTACGACTGTGGCATGTACTCACATTTGCAGGGCAACCTGACTGTTTGCGACTGCTGCGAATCGTTTCTTTTAACAAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCAGCGGCTCTTCAAGGTaGCAGAGCGCAGCCTTCAGC +
Preference number: 5 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLSGSSR*QSAAFS
Trigger: GCTGAAGGCTGCGCTCTGCAACCTTGAAGAGCCGCT...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTAGCGGCTCTTCAAGGTaGCAGAGCGCAGCCTTCAGC +
Preference number: 5 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVSGSSR*QSAAFS
Trigger: GCTGAAGGCTGCGCTCTGCAACCTTGAAGAGCCGCT...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTATGCTTGAGATCTTGTaGAGAGCCAGGGTCAGCGCC +
Preference number: 5 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFMLEIL*RARVSA
Trigger: GGCGCTGACCCTGGCTCTCAACAAGATCTCAAGCAT...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTGGGATGCTTGAGATCTaGTTGAGAGCCAGGGTCAGC +
Preference number: 5 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFGMLEI*LRARVS
Trigger: GCTGACCCTGGCTCTCAACAAGATCTCAAGCATCCC...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS TCA 90 bp GCTGCTAAGGCTTCTTTCAGCTTGAAGTTGCCCACAAGTTTCAGTTaGTTTAGCCCATTCAGGCCTTCCGTAGGAAAGGAAGTTAATTCA +
Preference number: 5 (lower is better)
Translates to: AAKASFSLKLPTSFS*FSPFRPSVGKEVNS
Trigger: TGAATTAACTTCCTTTCCTACGGAAGGCCTGAATGGGCTAAATCAACTGAAACTTGTGGGCAACTTCAAGCTGAAAGAAGCCTTAGCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000379214.9
ENST00000389858.4
ENST00000489910.1
CDS GCA 90 bp AAGCCACTGCCAATGCAGGACAGCTGTGTGATTTTATCAAGTGTTTaGATGATACTGGCTTTGTTAAAAGAAACGATTCGCAGCAGTCGC +
Preference number: 5 (lower is better)
Translates to: KPLPMQDSCVILSSV*MILALLKETIRSSR
Trigger: GCGACTGCTGCGAATCGTTTCTTTTAACAAAGCCAGTATCATGCAAACACTTGATAAAATCACACAGCTGTCCTGCATTGGCAGTGGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTACCTCCGTCAAGCTGTaGTCATCCAGCCACAGATGC +
Preference number: 5 (lower is better)
Translates to: SASQMKDENRVHSINTDFTSVKL*SSSHRC
Trigger: GCATCTGTGGCTGGATGACAACAGCTTGACGGAGGT...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTACCTCCGTCAAGCTGTaGTCATCCAGCCACAGATGC +
Preference number: 5 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVTSVKL*SSSHRC
Trigger: GCATCTGTGGCTGGATGACAACAGCTTGACGGAGGT...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTATGCTTGAGATCTTGTaGAGAGCCAGGGTCAGCGCC +
Preference number: 5 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVMLEIL*RARVSA
Trigger: GGCGCTGACCCTGGCTCTCAACAAGATCTCAAGCAT...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTGGGATGCTTGAGATCTaGTTGAGAGCCAGGGTCAGC +
Preference number: 5 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVGMLEI*LRARVS
Trigger: GCTGACCCTGGCTCTCAACAAGATCTCAAGCATCCC...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTACAGTTCCTGTAAGATaGGGGAACTGCTGCACCATG +
Preference number: 5 (lower is better)
Translates to: SASQMKDENRVHSINTDFTVPVR*GNCCTM
Trigger: CATGGTGCAGCAGTTCCCCAATCTTACAGGAACTGT...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCAGAAACCCAGCTACTTaGCAGCCACTGCCAGTTTCC +
Preference number: 5 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLRNPAT*QPLPVS
Trigger: GGAAACTGGCAGTGGCTGCAAAGTAGCTGGGTTTCT...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTAGAAACCCAGCTACTTaGCAGCCACTGCCAGTTTCC +
Preference number: 5 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVRNPAT*QPLPVS
Trigger: GGAAACTGGCAGTGGCTGCAAAGTAGCTGGGTTTCT...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTACAGTTCCTGTAAGATaGGGGAACTGCTGCACCATG +
Preference number: 5 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVTVPVR*GNCCTM
Trigger: CATGGTGCAGCAGTTCCCCAATCTTACAGGAACTGT...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTTCGCAAACAGTCAGGTaGCCCTGCAAATGTGAGTAC +
Preference number: 5 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVSQTVR*PCKCEY
Trigger: GTACTCACATTTGCAGGGCAACCTGACTGTTTGCGA...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTATAAAAGAAAGGTCGTaGCCCGCCAATTGTAGCGCT +
Preference number: 5 (lower is better)
Translates to: SASQMKDENRVHSINTDFIKERS*PANCSA
Trigger: AGCGCTACAATTGGCGGGCAACGACCTTTCTTTTAT...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000389858.4
CDS TCA 90 bp ATCACAGTTAATTGCAAGTTGTCACCTTCTTACACCCAAGACCTTTaGAACCAACTTGCATTCTGCCCCCAAATCTTGTTTCTGTCTTTT +
Preference number: 5 (lower is better)
Translates to: ITVNCKLSPSYTQDL*NQLAFCPQILFLSF
Trigger: AAAAGACAGAAACAAGATTTGGGGGCAGAATGCAAGTTGGTTTCAAAGGTCTTGGGTGTAAGAAGGTGACAACTTGCAATTAACTGTGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000530658.1
CDS-3UTR CAA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTATAAAAGAAAGGTCGTaGCCCGCCAATTGTAGCTCT +
Preference number: 5 (lower is better)
Translates to: SASQMKDENRVHSINTDFIKERS*PANCSS
Trigger: AGAGCTACAATTGGCGGGCAACGACCTTTCTTTTAT...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379214.9
CDS-3UTR CAA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTTGGAGCGTTAGAACTTaGAGTTCTTTCAACCCAGAC +
Preference number: 5 (lower is better)
Translates to: SASQMKDENRVHSINTDFWSVRT*SSFNPD
Trigger: GTCTGGGTTGAAAGAACTCAAAGTTCTAACGCTCCA...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTACTGAGGTAATATGGTaGGCATCTAAACGCAAAGAC +
Preference number: 5 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFTEVIW*ASKRKD
Trigger: GTCTTTGCGTTTAGATGCCAACCATATTACCTCAGT...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCACCAGGCTTGAAAGGTaGGTAAATGCAAAGTCAGGG +
Preference number: 5 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLTRLER*VNAKSG
Trigger: CCCTGACTTTGCATTTACCAACCTTTCAAGCCTGGT...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTACCAGGCTTGAAAGGTaGGTAAATGCAAAGTCAGGG +
Preference number: 5 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVTRLER*VNAKSG
Trigger: CCCTGACTTTGCATTTACCAACCTTTCAAGCCTGGT...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS TCA 90 bp ACATCTAGGTTAGTTATTGGCCCAAGTGTGGCAAAAGCTCTACTGTaGATTTCATGTATCAGGTTTCTACTCAGATCTAGAATCCTTAGA +
Preference number: 5 (lower is better)
Translates to: TSRLVIGPSVAKALL*ISCIRFLLRSRILR
Trigger: TCTAAGGATTCTAGATCTGAGTAGAAACCTGATACATGAAATTCACAGTAGAGCTTTTGCCACACTTGGGCCAATAACTAACCTAGATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CCA 90 bp TTGCAGATAAGCTTCTTTCGACAGTTGCTAGCATTAATAAAAATATaGCACTTTCTGAGGAGAAAACTGCAAGAAACCCAGCTACTTTGC +
Preference number: 5 (lower is better)
Translates to: LQISFFRQLLALIKI*HFLRRKLQETQLLC
Trigger: GCAAAGTAGCTGGGTTTCTTGCAGTTTTCTCCTCAGAAAGTGCCATATTTTTATTAATGCTAGCAACTGTCGAAAGAAGCTTATCTGCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTACTGATCCACTTTTCTaGGTAACACGTCGCTTCAGT +
Preference number: 5 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVTDPLF*VTRRFS
Trigger: ACTGAAGCGACGTGTTACCAAGAAAAGTGGATCAGT...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCACTGATCCACTTTTCTaGGTAACACGTCGCTTCAGT +
Preference number: 5 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLTDPLF*VTRRFS
Trigger: ACTGAAGCGACGTGTTACCAAGAAAAGTGGATCAGT...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTTGCATGATACTGGCTTaGTTAAAAGAAACGATTCGC +
Preference number: 5 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFCMILA*LKETIR
Trigger: GCGAATCGTTTCTTTTAACAAAGCCAGTATCATGCA...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp GATATTAGGAAGTATTCATTAATGAGAACATTACATGAAGCCACCAAATCCCTCACTGAGGTAATATGGTaGGCATCTAAACGCAAAGAC +
Preference number: 5 (lower is better)
Translates to: DIRKYSLMRTLHEATKSLTEVIW*ASKRKD
Trigger: GTCTTTGCGTTTAGATGCCAACCATATTACCTCAGT...GAGGGATTTGGTGGCTTCATGTAATGTTCTCATTAATGAATACTTCCTAATATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTGTATGCTGCTTATCTTaGTACCTGTCAAAGTCAGAC +
Preference number: 5 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVVCCLS*YLSKSD
Trigger: GTCTGACTTTGACAGGTACAAAGATAAGCAGCATAC...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTAAGCCTATAAACAATTaGGACGAAGGCAGTGATGTA +
Preference number: 5 (lower is better)
Translates to: SASQMKDENRVHSINTDFKPINN*DEGSDV
Trigger: TACATCACTGCCTTCGTCCAAATTGTTTATAGGCTT...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTTGCATGATACTGGCTTaGTTAAAAGAAACGATTCGC +
Preference number: 5 (lower is better)
Translates to: SASQMKDENRVHSINTDFCMILA*LKETIR
Trigger: GCGAATCGTTTCTTTTAACAAAGCCAGTATCATGCA...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp AATAAAGTAATGCCTATGTATACTCTCACAGTTCTAGCTGGGACAGTCCCTTTTTTGAAAATGACTGGTTaGAGAAATAAACTGCCACCT +
Preference number: 5 (lower is better)
Translates to: NKVMPMYTLTVLAGTVPFLKMTG*RNKLPP
Trigger: AGGTGGCAGTTTATTTCTCAAACCAGTCATTTTCAA...AAAAGGGACTGTCCCAGCTAGAACTGTGAGAGTATACATAGGCATTACTTTATT
38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTTTAGGCACCTGTTCTTaGAAAATGACTGGTTTGAGA +
Preference number: 5 (lower is better)
Translates to: SASQMKDENRVHSINTDFLGTCS*KMTGLR
Trigger: TCTCAAACCAGTCATTTTCAAAGAACAGGTGCCTAA...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTCTTCTGTGTTTAAATTaGCATAAGAGTCACAACCCC +
Preference number: 5 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVLLCLN*HKSHNP
Trigger: GGGGTTGTGACTCTTATGCAAATTTAAACACAGAAG...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp AGTGCTTCCCAGATGAAAGATGAGAATAGGGTTCACTCTATAAACACTGATTTTTTGAAAATGACTGGTTaGAGAAATAAACTGCCACCT +
Preference number: 5 (lower is better)
Translates to: SASQMKDENRVHSINTDFLKMTG*RNKLPP
Trigger: AGGTGGCAGTTTATTTCTCAAACCAGTCATTTTCAA...AAAATCAGTGTTTATAGAGTGAACCCTATTCTCATCTTTCATCTGGGAAGCACT
37% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTTTAGGCACCTGTTCTTaGAAAATGACTGGTTTGAGA +
Preference number: 5 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVLGTCS*KMTGLR
Trigger: TCTCAAACCAGTCATTTTCAAAGAACAGGTGCCTAA...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS-3UTR CAA 90 bp CAAAAAGTATATAAACCACAATTTAACAGTCTGCTACTGGCAGCCACTATAGTTCAGATCATACATTGCTaGGACATTGCATTTTTCACC +
Preference number: 5 (lower is better)
Translates to: QKVYKPQFNSLLLAATIVQIIHC*DIAFFT
Trigger: GGTGAAAAATGCAATGTCCAAGCAATGTATGATCTG...AACTATAGTGGCTGCCAGTAGCAGACTGTTAAATTGTGGTTTATATACTTTTTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 90 bp TTCTACTCAGATCTAGAATCCTTAGAGATATCAGGCCTTGAAAGGTaGCTTCCTTTATTTGGTAGATTTGATTACGCTGTAAAGAAATTT +
Preference number: 5 (lower is better)
Translates to: FYSDLESLEISGLER*LPLFGRFDYAVKKF
Trigger: AAATTTCTTTACAGCGTAATCAAATCTACCAAATAAAGGAAGGCACCTTTCAAGGCCTGATATCTCTAAGGATTCTAGATCTGAGTAGAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CCA 72 bp GCGGCGCTCCGGAGTTTCGCCCTTCCCGCTGCTCCATaGACGCGCAGAGGCAGCCCCGCTCCTCCGGCGGCT +
Preference number: 6 (lower is better)
Translates to: AALRSFALPAAP*TRRGSPAPPAA
Trigger: AGCCGCCGGAGGAGCGGGGCTGCCTCTGCGCGTCCATGGAGCAGCGGGAAGGGCGAAACTCCGGAGCGCCGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 72 bp CAGGGACGCGGCGCTCCGGAGTTTCGCCCTTCCCGCTaGTCCATGGACGCGCAGAGGCAGCCCCGCTCCTCC +
Preference number: 6 (lower is better)
Translates to: QGRGAPEFRPSR*SMDAQRQPRSS
Trigger: GGAGGAGCGGGGCTGCCTCTGCGCGTCCATGGAGCAGCGGGAAGGGCGAAACTCCGGAGCGCCGCGTCCCTG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 72 bp CGGCTCTTCAAGGTTGCAGAGCGCAGCCTTCAGCCATaGCGGCCACTCGCCCCAGCCCCCGCCGTGGCTCTC +
Preference number: 6 (lower is better)
Translates to: RLFKVAERSLQP*RPLAPAPAVAL
Trigger: GAGAGCCACGGCGGGGGCTGGGGCGAGTGGCCGGCATGGCTGAAGGCTGCGCTCTGCAACCTTGAAGAGCCG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CAA 90 bp CCGGTCTCCCTGTCCCTGGCCTCTCAATGCAGCGGCTCTTCAAGGTaGCAGAGCGCAGCCTTCAGCCATGCCGGCCACTCGCCCCAGCCC +
Preference number: 6 (lower is better)
Translates to: PVSLSLASQCSGSSR*QSAAFSHAGHSPQP
Trigger: GGGCTGGGGCGAGTGGCCGGCATGGCTGAAGGCTGCGCTCTGCAACCTTGAAGAGCCGCTGCATTGAGAGGCCAGGGACAGGGAGACCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CCA 72 bp GCCCCCGCCGTGGCTCTCGCACAAACACCCAGACTCTaGCTCGCTGTCTCCCAGCCGCGGCTCAATCTCTTC +
Preference number: 6 (lower is better)
Translates to: APAVALAQTPRL*LAVSQPRLNLF
Trigger: GAAGAGATTGAGCCGCGGCTGGGAGACAGCGAGCCAGAGTCTGGGTGTTTGTGCGAGAGCCACGGCGGGGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CCA 72 bp GGCCGCGCTCTGCCATCGCACCGGTCTCCCTGTCCCTaGCCTCTCAATGCAGCGGCTCTTCAAGGTTGCAGA +
Preference number: 6 (lower is better)
Translates to: GRALPSHRSPCP*PLNAAALQGCR
Trigger: TCTGCAACCTTGAAGAGCCGCTGCATTGAGAGGCCAGGGACAGGGAGACCGGTGCGATGGCAGAGCGCGGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 72 bp TGTCCCTGGCCTCTCAATGCAGCGGCTCTTCAAGGTTaGAGAGCGCAGCCTTCAGCCATGCCGGCCACTCGC +
Preference number: 6 (lower is better)
Translates to: CPWPLNAAALQG*RAQPSAMPATR
Trigger: GCGAGTGGCCGGCATGGCTGAAGGCTGCGCTCTGCAACCTTGAAGAGCCGCTGCATTGAGAGGCCAGGGACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 72 bp GCCATCGCACCGGTCTCCCTGTCCCTGGCCTCTCAATaGAGCGGCTCTTCAAGGTTGCAGAGCGCAGCCTTC +
Preference number: 6 (lower is better)
Translates to: AIAPVSLSLASQ*SGSSRLQSAAF
Trigger: GAAGGCTGCGCTCTGCAACCTTGAAGAGCCGCTGCATTGAGAGGCCAGGGACAGGGAGACCGGTGCGATGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CAA 72 bp CTGTCCCTGGCCTCTCAATGCAGCGGCTCTTCAAGGTaGCAGAGCGCAGCCTTCAGCCATGCCGGCCACTCG +
Preference number: 6 (lower is better)
Translates to: LSLASQCSGSSR*QSAAFSHAGHS
Trigger: CGAGTGGCCGGCATGGCTGAAGGCTGCGCTCTGCAACCTTGAAGAGCCGCTGCATTGAGAGGCCAGGGACAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CAA 72 bp TTGAGAGCCAGGGTCAGCGCCTGTAGGGTGGGCAGATaGCTGAGGGGGTGCACAGGCACCTCCGTCAAGCTG +
Preference number: 6 (lower is better)
Translates to: LRARVSACRVGR*LRGCTGTSVKL
Trigger: CAGCTTGACGGAGGTGCCTGTGCACCCCCTCAGCAATCTGCCCACCCTACAGGCGCTGACCCTGGCTCTCAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379214.9
ENST00000389858.4
ENST00000480977.2
ENST00000527773.1
CDS CAA 90 bp GAGATCTTGTTGAGAGCCAGGGTCAGCGCCTGTAGGGTGGGCAGATaGCTGAGGGGGTGCACAGGCACCTCCGTCAAGCTGTTGTCATCC +
Preference number: 6 (lower is better)
Translates to: EILLRARVSACRVGR*LRGCTGTSVKLLSS
Trigger: GGATGACAACAGCTTGACGGAGGTGCCTGTGCACCCCCTCAGCAATCTGCCCACCCTACAGGCGCTGACCCTGGCTCTCAACAAGATCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379214.9
ENST00000389858.4
ENST00000480977.2
ENST00000527773.1
CDS GCA 72 bp CTTCTTCATCTGCATAATCAGAGTGGGCCGACTGTGTaGCACAGTCGGACCAGTAGCCCTCAGGTCTTTGGC +
Preference number: 6 (lower is better)
Translates to: LLHLHNQSGPTV*HSRTSSPQVFG
Trigger: GCCAAAGACCTGAGGGCTACTGGTCCGACTGTGGCACACAGTCGGCCCACTCTGATTATGCAGATGAAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CAA 72 bp CCAGACAAGGCCTTTGGGTGGATAAAAGAAAGGTCGTaGCCCGCCAATTGTAGCGCTTGGGTGAAGGCGCTG +
Preference number: 6 (lower is better)
Translates to: PDKAFGWIKERS*PANCSAWVKAL
Trigger: CAGCGCCTTCACCCAAGCGCTACAATTGGCGGGCAACGACCTTTCTTTTATCCACCCAAAGGCCTTGTCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000389858.4
CDS GCA 72 bp CAGCTACTTTGCAGCCACTGCCAGTTTCCCACCAAATaGCAAATTCAGCGAATCTGCCCCAGGACACAGCAT +
Preference number: 6 (lower is better)
Translates to: QLLCSHCQFPTK*QIQRICPRTQH
Trigger: ATGCTGTGTCCTGGGGCAGATTCGCTGAATTTGGCATTTGGTGGGAAACTGGCAGTGGCTGCAAAGTAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CAA 72 bp TTGGTAAATGCAAAGTCAGGGATGCTTGAGATCTTGTaGAGAGCCAGGGTCAGCGCCTGTAGGGTGGGCAGA +
Preference number: 6 (lower is better)
Translates to: LVNAKSGMLEIL*RARVSACRVGR
Trigger: TCTGCCCACCCTACAGGCGCTGACCCTGGCTCTCAACAAGATCTCAAGCATCCCTGACTTTGCATTTACCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379214.9
ENST00000389858.4
ENST00000480977.2
ENST00000527773.1
CDS CAA 90 bp CTTGAAAGGTTGGTAAATGCAAAGTCAGGGATGCTTGAGATCTTGTaGAGAGCCAGGGTCAGCGCCTGTAGGGTGGGCAGATTGCTGAGG +
Preference number: 6 (lower is better)
Translates to: LERLVNAKSGMLEIL*RARVSACRVGRLLR
Trigger: CCTCAGCAATCTGCCCACCCTACAGGCGCTGACCCTGGCTCTCAACAAGATCTCAAGCATCCCTGACTTTGCATTTACCAACCTTTCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379214.9
ENST00000389858.4
ENST00000480977.2
ENST00000527773.1
CDS CAA 90 bp AGGCTTGAAAGGTTGGTAAATGCAAAGTCAGGGATGCTTGAGATCTaGTTGAGAGCCAGGGTCAGCGCCTGTAGGGTGGGCAGATTGCTG +
Preference number: 6 (lower is better)
Translates to: RLERLVNAKSGMLEI*LRARVSACRVGRLL
Trigger: CAGCAATCTGCCCACCCTACAGGCGCTGACCCTGGCTCTCAACAAGATCTCAAGCATCCCTGACTTTGCATTTACCAACCTTTCAAGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000379214.9
ENST00000389858.4
ENST00000480977.2
ENST00000527773.1
CDS TCA 72 bp GCAGCAGTCGCAAACAGTCAGGTTGCCCTGCAAATGTaGGTACATGCCACAGTCGTAGTAGAAATCCTGTTC +
Preference number: 6 (lower is better)
Translates to: AAVANSQVALQM*VHATVVVEILF
Trigger: GAACAGGATTTCTACTACGACTGTGGCATGTACTCACATTTGCAGGGCAACCTGACTGTTTGCGACTGCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS TCA 72 bp GGCTCGTCCACAGGCCTGCACCTGGTCAGAACTGTCTaGGACAAAGGAATCTTCTTCATCTGCATAATCAGA +
Preference number: 6 (lower is better)
Translates to: GSSTGLHLVRTV*DKGIFFICIIR
Trigger: TCTGATTATGCAGATGAAGAAGATTCCTTTGTCTCAGACAGTTCTGACCAGGTGCAGGCCTGTGGACGAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 72 bp TGCCAGTTTCCCACCAAATGCCAAATTCAGCGAATCTaGCCCAGGACACAGCATCAAGAAAAGTTAGGATGC +
Preference number: 6 (lower is better)
Translates to: CQFPTKCQIQRI*PRTQHQEKLGC
Trigger: GCATCCTAACTTTTCTTGATGCTGTGTCCTGGGGCAGATTCGCTGAATTTGGCATTTGGTGGGAAACTGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 72 bp AAAGAAACGATTCGCAGCAGTCGCAAACAGTCAGGTTaGCCTGCAAATGTGAGTACATGCCACAGTCGTAGT +
Preference number: 6 (lower is better)
Translates to: KETIRSSRKQSG*PANVSTCHSRS
Trigger: ACTACGACTGTGGCATGTACTCACATTTGCAGGGCAACCTGACTGTTTGCGACTGCTGCGAATCGTTTCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CAA 72 bp CCTTCAAAACTGTCCTCGGGGACTGAGGTAATATGGTaGGCATCTAAACGCAAAGACTGCAAAGCACTCAGC +
Preference number: 6 (lower is better)
Translates to: PSKLSSGTEVIW*ASKRKDCKALS
Trigger: GCTGAGTGCTTTGCAGTCTTTGCGTTTAGATGCCAACCATATTACCTCAGTCCCCGAGGACAGTTTTGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 72 bp AGAAAACTGCAAGAAACCCAGCTACTTTGCAGCCACTaGCAGTTTCCCACCAAATGCCAAATTCAGCGAATC +
Preference number: 6 (lower is better)
Translates to: RKLQETQLLCSH*QFPTKCQIQRI
Trigger: GATTCGCTGAATTTGGCATTTGGTGGGAAACTGGCAGTGGCTGCAAAGTAGCTGGGTTTCTTGCAGTTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CCA 72 bp ACTTTGAGTTCTTTCAACCCAGACAAGGCCTTTGGGTaGATAAAAGAAAGGTCGTTGCCCGCCAATTGTAGC +
Preference number: 6 (lower is better)
Translates to: TLSSFNPDKAFG*IKERSLPANCS
Trigger: GCTACAATTGGCGGGCAACGACCTTTCTTTTATCCACCCAAAGGCCTTGTCTGGGTTGAAAGAACTCAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CAA 72 bp CCAGACAAGGCCTTTGGGTGGATAAAAGAAAGGTCGTaGCCCGCCAATTGTAGCTCTTCTAGAAAAGGAAAG +
Preference number: 6 (lower is better)
Translates to: PDKAFGWIKERS*PANCSSSRKGK
Trigger: CTTTCCTTTTCTAGAAGAGCTACAATTGGCGGGCAACGACCTTTCTTTTATCCACCCAAAGGCCTTGTCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000379214.9
CDS GCA 72 bp TTTCTGAGGAGAAAACTGCAAGAAACCCAGCTACTTTaGAGCCACTGCCAGTTTCCCACCAAATGCCAAATT +
Preference number: 6 (lower is better)
Translates to: FLRRKLQETQLL*SHCQFPTKCQI
Trigger: AATTTGGCATTTGGTGGGAAACTGGCAGTGGCTGCAAAGTAGCTGGGTTTCTTGCAGTTTTCTCCTCAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CAA 90 bp GAAGCCACTGCCAATGCAGGACAGCTGTGTGATTTTATCAAGTGTTaGCATGATACTGGCTTTGTTAAAAGAAACGATTCGCAGCAGTCG +
Preference number: 6 (lower is better)
Translates to: EATANAGQLCDFIKC*HDTGFVKRNDSQQS
Trigger: CGACTGCTGCGAATCGTTTCTTTTAACAAAGCCAGTATCATGCAAACACTTGATAAAATCACACAGCTGTCCTGCATTGGCAGTGGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CAA 90 bp GTAACACGTCGCTTCAGTAACTTCCAGTCTTCTTTAAACTTTGGGTaGAAGAAAACATACAGGACTGGATTCAGGCAAGCAGGCAATGGA +
Preference number: 6 (lower is better)
Translates to: VTRRFSNFQSSLNFG*KKTYRTGFRQAGNG
Trigger: TCCATTGCCTGCTTGCCTGAATCCAGTCCTGTATGTTTTCTTCAACCCAAAGTTTAAAGAAGACTGGAAGTTACTGAAGCGACGTGTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CAA 90 bp CAGGACAGCTGTGTGATTTTATCAAGTGTTTGCATGATACTGGCTTaGTTAAAAGAAACGATTCGCAGCAGTCGCAAACAGTCAGGTTGC +
Preference number: 6 (lower is better)
Translates to: QDSCVILSSVCMILA*LKETIRSSRKQSGC
Trigger: GCAACCTGACTGTTTGCGACTGCTGCGAATCGTTTCTTTTAACAAAGCCAGTATCATGCAAACACTTGATAAAATCACACAGCTGTCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS TCA 72 bp CTAGGAAAGCCAAAAGGGCAGCAACCCGGAACTGTTTaGGATGATTGCTCTTCCCATTTTTCATTATATCTT +
Preference number: 6 (lower is better)
Translates to: LGKPKGQQPGTV*DDCSSHFSLYL
Trigger: AAGATATAATGAAAAATGGGAAGAGCAATCATCTCAAACAGTTCCGGGTTGCTGCCCTTTTGGCTTTCCTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CAA 90 bp CAACCACCTTGGCTACTGATGGAAACTGAAACTGATCCACTTTTCTaGGTAACACGTCGCTTCAGTAACTTCCAGTCTTCTTTAAACTTT +
Preference number: 6 (lower is better)
Translates to: QPPWLLMETETDPLF*VTRRFSNFQSSLNF
Trigger: AAAGTTTAAAGAAGACTGGAAGTTACTGAAGCGACGTGTTACCAAGAAAAGTGGATCAGTTTCAGTTTCCATCAGTAGCCAAGGTGGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 72 bp CCAATGCAGGACAGCTGTGTGATTTTATCAAGTGTTTaGATGATACTGGCTTTGTTAAAAGAAACGATTCGC +
Preference number: 6 (lower is better)
Translates to: PMQDSCVILSSV*MILALLKETIR
Trigger: GCGAATCGTTTCTTTTAACAAAGCCAGTATCATGCAAACACTTGATAAAATCACACAGCTGTCCTGCATTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CAA 72 bp CCATTCAGGCCTTCCGTAGGAAAGGAAGTTAATTCATaGAAACTTACATCTAGGTTAGTTATTGGCCCAAGT +
Preference number: 6 (lower is better)
Translates to: PFRPSVGKEVNS*KLTSRLVIGPS
Trigger: ACTTGGGCCAATAACTAACCTAGATGTAAGTTTCAATGAATTAACTTCCTTTCCTACGGAAGGCCTGAATGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000379214.9
ENST00000389858.4
ENST00000489910.1
CDS CAA 72 bp GCCAATGCAGGACAGCTGTGTGATTTTATCAAGTGTTaGCATGATACTGGCTTTGTTAAAAGAAACGATTCG +
Preference number: 6 (lower is better)
Translates to: ANAGQLCDFIKC*HDTGFVKRNDS
Trigger: CGAATCGTTTCTTTTAACAAAGCCAGTATCATGCAAACACTTGATAAAATCACACAGCTGTCCTGCATTGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS TCA 72 bp TTAGTTATTGGCCCAAGTGTGGCAAAAGCTCTACTGTaGATTTCATGTATCAGGTTTCTACTCAGATCTAGA +
Preference number: 6 (lower is better)
Translates to: LVIGPSVAKALL*ISCIRFLLRSR
Trigger: TCTAGATCTGAGTAGAAACCTGATACATGAAATTCACAGTAGAGCTTTTGCCACACTTGGGCCAATAACTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS GCA 72 bp GATCTAGAATCCTTAGAGATATCAGGCCTTGAAAGGTaGCTTCCTTTATTTGGTAGATTTGATTACGCTGTA +
Preference number: 6 (lower is better)
Translates to: DLESLEISGLER*LPLFGRFDYAV
Trigger: TACAGCGTAATCAAATCTACCAAATAAAGGAAGGCACCTTTCAAGGCCTGATATCTCTAAGGATTCTAGATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4
CDS CAA 72 bp AATAAGTTAGACACAGAAATCAAGCCTATAAACAATTaGGACGAAGGCAGTGATGTACAAGATGCAAATGTT +
Preference number: 6 (lower is better)
Translates to: NKLDTEIKPINN*DEGSDVQDANV
Trigger: AACATTTGCATCTTGTACATCACTGCCTTCGTCCAAATTGTTTATAGGCTTGATTTCTGTGTCTAACTTATT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379214.9
ENST00000389858.4