Pregenerated sensors for LERFS (Homo sapiens)

Ensembl gene IDs: ENSG00000234665

Ensembl transcript IDs: ENST00000438699.6, ENST00000445604.7, ENST00000585533.2, ENST00000586625.6, ENST00000654225.1, ENST00000654882.1, ENST00000658257.1, ENST00000662817.1, ENST00000665356.1, ENST00000666775.1, ENST00000667349.1, ENST00000667498.1, ENST00000669453.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GTTTATCTATACTTTGAGCTTCGTGTAGTTTTCATTAGGATTTTGTaGAATGCACAGGATGATGTAGGCTTTCAATTCAGGGCAGAAGCT	+
Preference number: 5 (lower is better) Translates to: VYLYFELRVVFIRIL*NAQDDVGFQFRAEA Trigger: AGCTTCTGCCCTGAATTGAAAGCCTACATCATCCTGTGCATTTCACAAAATCCTAATGAAAACTACACGAAGCTCAAAGTATAGATAAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000445604.7 ENST00000658257.1 ENST00000667349.1
CDS TCA 72 bp	CCTACTCCTGCAAGTGTGCTCCTGGTGGTCTTTAACTaGAGGGCACTGACTGGGTCACTGGTGAAGTTCCCC	+
Preference number: 6 (lower is better) Translates to: PTPASVLLVVFN*RALTGSLVKFP Trigger: GGGGAACTTCACCAGTGACCCAGTCAGTGCCCTTCAGTTAAAGACCACCAGGAGCACACTTGCAGGAGTAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000445604.7 ENST00000662817.1 ENST00000665356.1 ENST00000666775.1
CDS TCA 72 bp	CAGCTGGCTTCAAGTGTGCTCCTGGTGGTCTTTAACTaGAGGGCACTGACTGGGTCACTGGTGAAGTTCCCC	+
Preference number: 6 (lower is better) Translates to: QLASSVLLVVFN*RALTGSLVKFP Trigger: GGGGAACTTCACCAGTGACCCAGTCAGTGCCCTTCAGTTAAAGACCACCAGGAGCACACTTGAAGCCAGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000585533.2
CDS TCA 72 bp	TACAAGTTTGGGCAGGAAAGAGGACTCTTATTACTCTaGGGGAATGCAGAAATCCCTCCGTTTTGTTGTTGT	+
Preference number: 6 (lower is better) Translates to: YKFGQERGLLLL*GNAEIPPFCCC Trigger: ACAACAACAAAACGGAGGGATTTCTGCATTCCCTCAGAGTAATAAGAGTCCTCTTTCCTGCCCAAACTTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669453.1
CDS TCA 72 bp	AGCCTTTGGATAGCGTGGTTTCACGGTTGTCAACACTaGTATGTTTATCTATACTTTGAGCTTCGTGTAGTT	+
Preference number: 6 (lower is better) Translates to: SLWIAWFHGCQH*YVYLYFELRVV Trigger: AACTACACGAAGCTCAAAGTATAGATAAACATATCAGTGTTGACAACCGTGAAACCACGCTATCCAAAGGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000445604.7 ENST00000658257.1 ENST00000667349.1
CDS CCA 72 bp	TTGACATATATTTATTGTGTGGTCTCTATTGAATGCTaGGTATCTTCCAGGAGCCTAAAATTCAGCAGTGAA	+
Preference number: 6 (lower is better) Translates to: LTYIYCVVSIEC*VSSRSLKFSSE Trigger: TTCACTGCTGAATTTTAGGCTCCTGGAAGATACCCAGCATTCAATAGAGACCACACAATAAATATATGTCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000586625.6 ENST00000654225.1 ENST00000662817.1 ENST00000667498.1
CDS GCA 72 bp	TATTTGACATATATTTATTGTGTGGTCTCTATTGAATaGTGGGTATCTTCCAGGAGCCTAAAATTCAGCAGT	+
Preference number: 6 (lower is better) Translates to: YLTYIYCVVSIE*WVSSRSLKFSS Trigger: ACTGCTGAATTTTAGGCTCCTGGAAGATACCCAGCATTCAATAGAGACCACACAATAAATATATGTCAAATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000586625.6 ENST00000654225.1 ENST00000662817.1 ENST00000667498.1
CDS CAA 72 bp	AACCATCGTATAACTCCATACTCAAGCCATACTGTCTaGATTGCCCAAGAAATTGCTTTTAAGAAATTGTCA	+
Preference number: 6 (lower is better) Translates to: NHRITPYSSHTV*IAQEIAFKKLS Trigger: TGACAATTTCTTAAAAGCAATTTCTTGGGCAATCAAGACAGTATGGCTTGAGTATGGAGTTATACGATGGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000438699.6 ENST00000445604.7 ENST00000654882.1 ENST00000669453.1

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