RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LDLRAP1 (Homo sapiens)

Ensembl gene IDs: ENSG00000157978

Ensembl transcript IDs: ENST00000374338.5, ENST00000462394.1, ENST00000470950.1, ENST00000474283.1, ENST00000484476.5, ENST00000485476.2, ENST00000488127.1

Found 240 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGAGAGGTGGCAGGCGGGCCCCAGAACTGGCTCCCCCGCAGCAGGTaGCTTTGGTCCATCACGTGTCAGGGCCGCTTGTGTCCGGCTGGC +
Preference number: 1 (lower is better)
Translates to: GEVAGGPQNWLPRSR*LWSITCQGRLCPAG
Trigger: GCCAGCCGGACACAAGCGGCCCTGACACGTGATGGACCAAAGCCACCTGCTGCGGGGGAGCCAGTTCTGGGGCCCGCCTGCCACCTCTCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR TCA 90 bp TCGTGCCAAGGCTGGCCTGTGTCAGGCCTCGCCCACGCCGCCTTATaGCAAATAGAGGCCGGTGCCAAGGAGGTGGCTACAGAGCAGGGG +
Preference number: 1 (lower is better)
Translates to: SCQGWPVSGLAHAAL*QIEAGAKEVATEQG
Trigger: CCCCTGCTCTGTAGCCACCTCCTTGGCACCGGCCTCTATTTGTCATAAGGCGGCGTGGGCGAGGCCTGACACAGGCCAGCCTTGGCACGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CCA 90 bp TGCAGCTCTGATCTTCAGGCTGACAATGCTGAGGGCTGGGAGAGGTaGCAGGCGGGCCCCAGAACTGGCTCCCCCGCAGCAGGTGGCTTT +
Preference number: 1 (lower is better)
Translates to: CSSDLQADNAEGWER*QAGPRTGSPAAGGF
Trigger: AAAGCCACCTGCTGCGGGGGAGCCAGTTCTGGGGCCCGCCTGCCACCTCTCCCAGCCCTCAGCATTGTCAGCCTGAAGATCAGAGCTGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CCA 90 bp CCCTGGGAGCAGGGAGCAGCCAGTTACACTGGTTCCAAGCACAGGTaGAGACCATCCACGGGGACCTTGGGCCCCTTCTCCTGGAGGAAG +
Preference number: 1 (lower is better)
Translates to: PWEQGAASYTGSKHR*RPSTGTLGPFSWRK
Trigger: CTTCCTCCAGGAGAAGGGGCCCAAGGTCCCCGTGGATGGTCTCCACCTGTGCTTGGAACCAGTGTAACTGGCTGCTCCCTGCTCCCAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CCA 90 bp ACTCAAACGGACACACAGAAACCAGAGGAAGAGCACAGCCTTGCGTaGAGGGGAGAAGGCAGGCAGGGGCCCGACGGAGGGCGGTCACAG +
Preference number: 1 (lower is better)
Translates to: TQTDTQKPEEEHSLA*RGEGRQGPDGGRSQ
Trigger: CTGTGACCGCCCTCCGTCGGGCCCCTGCCTGCCTTCTCCCCTCCACGCAAGGCTGTGCTCTTCCTCTGGTTTCTGTGTGTCCGTTTGAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CCA 90 bp AAGCACAGGTGGAGACCATCCACGGGGACCTTGGGCCCCTTCTCCTaGAGGAAGGGCAGAAGGAAAGCTGGACTCAATGCAGCACCATGG +
Preference number: 1 (lower is better)
Translates to: KHRWRPSTGTLGPFS*RKGRRKAGLNAAPW
Trigger: CCATGGTGCTGCATTGAGTCCAGCTTTCCTTCTGCCCTTCCTCCAGGAGAAGGGGCCCAAGGTCCCCGTGGATGGTCTCCACCTGTGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CCA 90 bp GTTTTCCCTAGGGCTGATGAAACTTGCTCCGACAAGCCAGGCCACTaGGAGGCACCTCAGGATGGAAAAGATGCTGGAGGCTTTGCTGGC +
Preference number: 1 (lower is better)
Translates to: VFPRADETCSDKPGH*EAPQDGKDAGGFAG
Trigger: GCCAGCAAAGCCTCCAGCATCTTTTCCATCCTGAGGTGCCTCCCAGTGGCCTGGCTTGTCGGAGCAAGTTTCATCAGCCCTAGGGAAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR GCA 90 bp AAATGCTTTGGTCACAGTCCTGATACCCACAGCCAGGGCAGAGCTTaGTCCAGGAGAGCAAGCGGGAGCCGATTACAGCACTGCACATGT +
Preference number: 1 (lower is better)
Translates to: KCFGHSPDTHSQGRA*SRRASGSRLQHCTC
Trigger: ACATGTGCAGTGCTGTAATCGGCTCCCGCTTGCTCTCCTGGAGCAAGCTCTGCCCTGGCTGTGGGTATCAGGACTGTGACCAAAGCATTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR TCA 90 bp TCCTTAGAAAGAGAGAAGGGACTAGAAATGCTTTGGTCACAGTCCTaGTACCCACAGCCAGGGCAGAGCTTGCTCCAGGAGAGCAAGCGG +
Preference number: 1 (lower is better)
Translates to: SLEREKGLEMLWSQS*YPQPGQSLLQESKR
Trigger: CCGCTTGCTCTCCTGGAGCAAGCTCTGCCCTGGCTGTGGGTATCAGGACTGTGACCAAAGCATTTCTAGTCCCTTCTCTCTTTCTAAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CCA 90 bp GGCAAAAGGGGAGGAAGGAAAGCGATTCTAAAGACAGATTGCTGCTaGTCTGTCCCGACCCAGGGTCACAGTGTCAGCAAAGAGAACAGC +
Preference number: 1 (lower is better)
Translates to: GKRGGRKAILKTDCC*SVPTQGHSVSKENS
Trigger: GCTGTTCTCTTTGCTGACACTGTGACCCTGGGTCGGGACAGACCAGCAGCAATCTGTCTTTAGAATCGCTTTCCTTCCTCCCCTTTTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR GCA 90 bp CATGGAGGAGCCCTCAGGGTCACACCTGCTGTTAATGCTTTAAAGTaGCAAGCTGTATCGTCTTTGGTCAGGAGCTGCCCCTTAGTCTCT +
Preference number: 1 (lower is better)
Translates to: HGGALRVTPAVNALK*QAVSSLVRSCPLVS
Trigger: AGAGACTAAGGGGCAGCTCCTGACCAAAGACGATACAGCTTGGCACTTTAAAGCATTAACAGCAGGTGTGACCCTGAGGGCTCCTCCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CCA 90 bp CAGCACTGCACATGTCACGCAGCAGGAGACGTGCCTGACGCAGACTaGCTTCTGAGCATAAGCCAGAAGTCACTGAATAAATATTCAAGG +
Preference number: 1 (lower is better)
Translates to: QHCTCHAAGDVPDAD*LLSISQKSLNKYSR
Trigger: CCTTGAATATTTATTCAGTGACTTCTGGCTTATGCTCAGAAGCCAGTCTGCGTCAGGCACGTCTCCTGCTGCGTGACATGTGCAGTGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CCA 90 bp CAAATAAATCTAGGTGTCAGGTTTCACACATCATCCCAGGAAGTATaGGGAGGCGGGGCGCAGACACTCAAACGGACACACAGAAACCAG +
Preference number: 1 (lower is better)
Translates to: QINLGVRFHTSSQEV*GGGAQTLKRTHRNQ
Trigger: CTGGTTTCTGTGTGTCCGTTTGAGTGTCTGCGCCCCGCCTCCCCATACTTCCTGGGATGATGTGTGAAACCTGACACCTAGATTTATTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR GCA 90 bp TCACGGAAATCAACAAGAGAGACAGCTAGCAGGACACGAGGCTCCTaGCAGTTCTGTGTGGAAAGGCACCAGATGGTTTGTTATGAAACA +
Preference number: 1 (lower is better)
Translates to: SRKSTRETASRTRGS*QFCVERHQMVCYET
Trigger: TGTTTCATAACAAACCATCTGGTGCCTTTCCACACAGAACTGGCAGGAGCCTCGTGTCCTGCTAGCTGTCTCTCTTGTTGATTTCCGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR TCA 90 bp AACAGCATGATTCTGACAGGGTTGGATTTTGTTTCACCCTCGGAATaGGCAGACTTCAAACACTTGCATTTTCACGGAAATCAACAAGAG +
Preference number: 1 (lower is better)
Translates to: NSMILTGLDFVSPSE*ADFKHLHFHGNQQE
Trigger: CTCTTGTTGATTTCCGTGAAAATGCAAGTGTTTGAAGTCTGCTCATTCCGAGGGTGAAACAAAATCCAACCCTGTCAGAATCATGCTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CCA 90 bp AAGGCAGGCAGGGGCCCGACGGAGGGCGGTCACAGAGATGATCCCCGTGTCAGTGGCGGGCCCCAGAACTaGCTCCCCCGCAGCAGGTGG +
Preference number: 2 (lower is better)
Translates to: KAGRGPTEGGHRDDPRVSGGPQN*LPRSRW
Trigger: CCACCTGCTGCGGGGGAGCCAGTTCTGGGGCCCGCC...ACTGACACGGGGATCATCTCTGTGACCGCCCTCCGTCGGGCCCCTGCCTGCCTT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CCA 90 bp AGCCTGGGGTCCAGGGCTCAAACCCCCGCCTGCTGGGCCCTGAGGAAGCAGAGCGAGGGCTGGGAGAGGTaGCAGGCGGGCCCCAGAACT +
Preference number: 2 (lower is better)
Translates to: SLGSRAQTPACWALRKQSEGWER*QAGPRT
Trigger: AGTTCTGGGGCCCGCCTGCCACCTCTCCCAGCCCTC...GCTCTGCTTCCTCAGGGCCCAGCAGGCGGGGGTTTGAGCCCTGGACCCCAGGCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CCA 90 bp AGGCAGGCAGGGGCCCGACGGAGGGCGGTCACAGAGATGATCCCCGTGTCAGTCGGTTCCAAGCACAGGTaGAGACCATCCACGGGGACC +
Preference number: 2 (lower is better)
Translates to: RQAGARRRAVTEMIPVSVGSKHR*RPSTGT
Trigger: GGTCCCCGTGGATGGTCTCCACCTGTGCTTGGAACC...GACTGACACGGGGATCATCTCTGTGACCGCCCTCCGTCGGGCCCCTGCCTGCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CCA 90 bp GTCAGGCCTCGCCCACGCCGCCTTATGACAAATAGAGGCCGGTGCCAAGGAGGTCAAACCCCCGCCTGCTaGGCCCTGAGGAAGCAGAGC +
Preference number: 2 (lower is better)
Translates to: VRPRPRRLMTNRGRCQGGQTPAC*ALRKQS
Trigger: GCTCTGCTTCCTCAGGGCCCAGCAGGCGGGGGTTTG...ACCTCCTTGGCACCGGCCTCTATTTGTCATAAGGCGGCGTGGGCGAGGCCTGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CCA 90 bp AGGCAGGCAGGGGCCCGACGGAGGGCGGTCACAGAGATGATCCCCGTGTCAGTCCTCAATGCAGCACCATaGAGGAGCCCTCAGGGTCAC +
Preference number: 2 (lower is better)
Translates to: RQAGARRRAVTEMIPVSVLNAAP*RSPQGH
Trigger: GTGACCCTGAGGGCTCCTCCATGGTGCTGCATTGAG...GACTGACACGGGGATCATCTCTGTGACCGCCCTCCGTCGGGCCCCTGCCTGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CAA 90 bp CAGACACTCAAACGGACACACAGAAACCAGAGGAAGAGCACAGCCTaGCGTGGAGGGGAGAAGGCAGGCAGGGGCCCGACGGAGGGCGGT +
Preference number: 2 (lower is better)
Translates to: QTLKRTHRNQRKSTA*RGGEKAGRGPTEGG
Trigger: ACCGCCCTCCGTCGGGCCCCTGCCTGCCTTCTCCCCTCCACGCAAGGCTGTGCTCTTCCTCTGGTTTCTGTGTGTCCGTTTGAGTGTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR GCA 90 bp AGGCAGGCAGGGGCCCGACGGAGGGCGGTCACAGAGATGATCCCCGTGTCAGTCAGCCGATTACAGCACTaGACATGTCACGCAGCAGGA +
Preference number: 2 (lower is better)
Translates to: RQAGARRRAVTEMIPVSVSRLQH*TCHAAG
Trigger: TCCTGCTGCGTGACATGTGCAGTGCTGTAATCGGCT...GACTGACACGGGGATCATCTCTGTGACCGCCCTCCGTCGGGCCCCTGCCTGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CCA 90 bp AAGCACAGGTGGAGACCATCCACGGGGACCTTGGGCCCCTTCTCCTGGAGGAAGCGCAGCAGGTGGCTTTaGTCCATCACGTGTCAGGGC +
Preference number: 2 (lower is better)
Translates to: KHRWRPSTGTLGPFSWRKRSRWL*SITCQG
Trigger: GCCCTGACACGTGATGGACCAAAGCCACCTGCTGCG...CTTCCTCCAGGAGAAGGGGCCCAAGGTCCCCGTGGATGGTCTCCACCTGTGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR TCA 90 bp TCCCACCCCACCCTCAGGCACCTCCGTCTAAGGTGTCCGGTTACTCCAGGTAAGCTTTGGTCACAGTCCTaGTACCCACAGCCAGGGCAG +
Preference number: 2 (lower is better)
Translates to: SHPTLRHLRLRCPVTPGKLWSQS*YPQPGQ
Trigger: CTGCCCTGGCTGTGGGTATCAGGACTGTGACCAAAG...CTTACCTGGAGTAACCGGACACCTTAGACGGAGGTGCCTGAGGGTGGGGTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR GCA 90 bp GAAAAGATGCTGGAGGCTTTGCTGGCTTTCAGGATGCCGGGAGCCCCACGGGGGAGGACACGAGGCTCCTaGCAGTTCTGTGTGGAAAGG +
Preference number: 2 (lower is better)
Translates to: EKMLEALLAFRMPGAPRGRTRGS*QFCVER
Trigger: CCTTTCCACACAGAACTGGCAGGAGCCTCGTGTCCT...CCCCCGTGGGGCTCCCGGCATCCTGAAAGCCAGCAAAGCCTCCAGCATCTTTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CCA 90 bp AGGATGGAAAAGATGCTGGAGGCTTTGCTGGCTTTCAGGATGCCGGGAGCCCCATCATCCCAGGAAGTATaGGGAGGCGGGGCGCAGACA +
Preference number: 2 (lower is better)
Translates to: RMEKMLEALLAFRMPGAPSSQEV*GGGAQT
Trigger: TGTCTGCGCCCCGCCTCCCCATACTTCCTGGGATGA...TGGGGCTCCCGGCATCCTGAAAGCCAGCAAAGCCTCCAGCATCTTTTCCATCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR GCA 90 bp TTCCCTAGGGCTGATGAAACTTGCTCCGACAAGCCAGGCCACTGGGAGGCACCTGAAAGCTGGACTCAATaGAGCACCATGGAGGAGCCC +
Preference number: 2 (lower is better)
Translates to: FPRADETCSDKPGHWEAPESWTQ*STMEEP
Trigger: GGGCTCCTCCATGGTGCTGCATTGAGTCCAGCTTTC...AGGTGCCTCCCAGTGGCCTGGCTTGTCGGAGCAAGTTTCATCAGCCCTAGGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CCA 90 bp CAGGAAGTATGGGGAGGCGGGGCGCAGACACTCAAACGGACACACAGAAACCAGGTGCCTGACGCAGACTaGCTTCTGAGCATAAGCCAG +
Preference number: 2 (lower is better)
Translates to: QEVWGGGAQTLKRTHRNQVPDAD*LLSISQ
Trigger: CTGGCTTATGCTCAGAAGCCAGTCTGCGTCAGGCAC...CTGGTTTCTGTGTGTCCGTTTGAGTGTCTGCGCCCCGCCTCCCCATACTTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CCA 90 bp GTCAGGCCTCGCCCACGCCGCCTTATGACAAATAGAGGCCGGTGCCAAGGAGGTCCTGCCAGTTCTGTGTaGAAAGGCACCAGATGGTTT +
Preference number: 2 (lower is better)
Translates to: VRPRPRRLMTNRGRCQGGPASSV*KGTRWF
Trigger: AAACCATCTGGTGCCTTTCCACACAGAACTGGCAGG...ACCTCCTTGGCACCGGCCTCTATTTGTCATAAGGCGGCGTGGGCGAGGCCTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CCA 90 bp TTCCCTAGGGCTGATGAAACTTGCTCCGACAAGCCAGGCCACTGGGAGGCACCTAAGACAGATTGCTGCTaGTCTGTCCCGACCCAGGGT +
Preference number: 2 (lower is better)
Translates to: FPRADETCSDKPGHWEAPKTDCC*SVPTQG
Trigger: ACCCTGGGTCGGGACAGACCAGCAGCAATCTGTCTT...AGGTGCCTCCCAGTGGCCTGGCTTGTCGGAGCAAGTTTCATCAGCCCTAGGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR GCA 90 bp AAGTATGGGGAGGCGGGGCGCAGACACTCAAACGGACACACAGAAACCAGAGGAGAAAAATCTCTCCCCTaGCTGACTGGCTGCAGCTCT +
Preference number: 2 (lower is better)
Translates to: KYGEAGRRHSNGHTETRGEKSLP*LTGCSS
Trigger: AGAGCTGCAGCCAGTCAGGCAGGGGAGAGATTTTTC...TCCTCTGGTTTCTGTGTGTCCGTTTGAGTGTCTGCGCCCCGCCTCCCCATACTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR GCA 90 bp AGGATGGAAAAGATGCTGGAGGCTTTGCTGGCTTTCAGGATGCCGGGAGCCCCACTAAAGACAGATTGCTaGTGGTCTGTCCCGACCCAG +
Preference number: 2 (lower is better)
Translates to: RMEKMLEALLAFRMPGAPLKTDC*WSVPTQ
Trigger: CTGGGTCGGGACAGACCAGCAGCAATCTGTCTTTAG...TGGGGCTCCCGGCATCCTGAAAGCCAGCAAAGCCTCCAGCATCTTTTCCATCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR TCA 90 bp GGAGGTGGCTACAGAGCAGGGGCAAGGAAGTTATCCTCATGTTCTGATAATGACAATCTCTCCCCTGCCTaGCTGGCTGCAGCTCTGATC +
Preference number: 2 (lower is better)
Translates to: GGGYRAGARKLSSCSDNDNLSPA*LAAALI
Trigger: GATCAGAGCTGCAGCCAGTCAGGCAGGGGAGAGATT...GTCATTATCAGAACATGAGGATAACTTCCTTGCCCCTGCTCTGTAGCCACCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CAA 90 bp GTCACACCTGCTGTTAATGCTTTAAAGTGCCAAGCTGTATCGTCTTaGGTCAGGAGCTGCCCCTTAGTCTCTAAGAGCCTGGGGTCCAGG +
Preference number: 2 (lower is better)
Translates to: VTPAVNALKCQAVSS*VRSCPLVSKSLGSR
Trigger: CCTGGACCCCAGGCTCTTAGAGACTAAGGGGCAGCTCCTGACCAAAGACGATACAGCTTGGCACTTTAAAGCATTAACAGCAGGTGTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR GCA 90 bp GAAAAGATGCTGGAGGCTTTGCTGGCTTTCAGGATGCCGGGAGCCCCACGGGGGCAGACTTCAAACACTTaGATTTTCACGGAAATCAAC +
Preference number: 2 (lower is better)
Translates to: EKMLEALLAFRMPGAPRGQTSNT*IFTEIN
Trigger: GTTGATTTCCGTGAAAATGCAAGTGTTTGAAGTCTG...CCCCCGTGGGGCTCCCGGCATCCTGAAAGCCAGCAAAGCCTCCAGCATCTTTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CCA 90 bp TCCCACCCCACCCTCAGGCACCTCCGTCTAAGGTGTCCGGTTACTCCAGGTAAGATTCAAGGCATCTTTTaGTTCTCAGAGAAAGAGCAG +
Preference number: 2 (lower is better)
Translates to: SHPTLRHLRLRCPVTPGKIQGIF*FSEKEQ
Trigger: CTGCTCTTTCTCTGAGAACCAAAAGATGCCTTGAAT...CTTACCTGGAGTAACCGGACACCTTAGACGGAGGTGCCTGAGGGTGGGGTGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CCA 90 bp CAGGGTTGGATTTTGTTTCACCCTCGGAATGAGCAGACTTCAAACACTTGCATTCTCCCCCGCAGCAGGTaGCTTTGGTCCATCACGTGT +
Preference number: 2 (lower is better)
Translates to: QGWILFHPRNEQTSNTCILPRSR*LWSITC
Trigger: ACACGTGATGGACCAAAGCCACCTGCTGCGGGGGAG...AATGCAAGTGTTTGAAGTCTGCTCATTCCGAGGGTGAAACAAAATCCAACCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CCA 90 bp GGCTACAGAGCAGGGGCAAGGAAGTTATCCTCATGTTCTGATAATGACCCTGCAGGAGGCACCTCAGGATaGAAAAGATGCTGGAGGCTT +
Preference number: 2 (lower is better)
Translates to: GYRAGARKLSSCSDNDPAGGTSG*KRCWRL
Trigger: AAGCCTCCAGCATCTTTTCCATCCTGAGGTGCCTCC...TGCAGGGTCATTATCAGAACATGAGGATAACTTCCTTGCCCCTGCTCTGTAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CAA 90 bp AGGGAAATTTGGGTCCTTAGAAAGAGAGAAGGGACTAGAAATGCTTaGGTCACAGTCCTGATACCCACAGCCAGGGCAGAGCTTGCTCCA +
Preference number: 2 (lower is better)
Translates to: REIWVLRKREGTRNA*VTVLIPTARAELAP
Trigger: TGGAGCAAGCTCTGCCCTGGCTGTGGGTATCAGGACTGTGACCAAAGCATTTCTAGTCCCTTCTCTCTTTCTAAGGACCCAAATTTCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR GCA 90 bp GGCTACAGAGCAGGGGCAAGGAAGTTATCCTCATGTTCTGATAATGACCCTGCATCTTTGGTCAGGAGCTaGCCCTTAGTCTCTAAGAGC +
Preference number: 2 (lower is better)
Translates to: GYRAGARKLSSCSDNDPASLVRS*PLVSKS
Trigger: GCTCTTAGAGACTAAGGGGCAGCTCCTGACCAAAGA...TGCAGGGTCATTATCAGAACATGAGGATAACTTCCTTGCCCCTGCTCTGTAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR GCA 90 bp TGTCAGTCCCTGGGAGCAGGGAGCAGCCAGTTACACTGGTTCCAAGCACAGGTGGTTAATGCTTTAAAGTaGCAAGCTGTATCGTCTTTG +
Preference number: 2 (lower is better)
Translates to: CQSLGAGSSQLHWFQAQVVNALK*QAVSSL
Trigger: CAAAGACGATACAGCTTGGCACTTTAAAGCATTAAC...CACCTGTGCTTGGAACCAGTGTAACTGGCTGCTCCCTGCTCCCAGGGACTGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR TCA 90 bp GGAGGTGGCTACAGAGCAGGGGCAAGGAAGTTATCCTCATGTTCTGATAATGACGTTTCACCCTCGGAATaGGCAGACTTCAAACACTTG +
Preference number: 2 (lower is better)
Translates to: GGGYRAGARKLSSCSDNDVSPSE*ADFKHL
Trigger: CAAGTGTTTGAAGTCTGCTCATTCCGAGGGTGAAAC...GTCATTATCAGAACATGAGGATAACTTCCTTGCCCCTGCTCTGTAGCCACCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR TCA 90 bp GAAAGGCACCAGATGGTTTGTTATGAAACACATTTTGGTCAGAAAATAGCTGGGCTACCCCTCCACGCTTaGGGCCTGTTTCCTCATCTG +
Preference number: 2 (lower is better)
Translates to: ERHQMVCYETHFGQKIAGLPLHA*GLFPHL
Trigger: CAGATGAGGAAACAGGCCTCAAGCGTGGAGGGGTAG...CCCAGCTATTTTCTGACCAAAATGTGTTTCATAACAAACCATCTGGTGCCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CCA 90 bp TGTCAGCAAAGAGAACAGCATGATTCTGACAGGGTTGGATTTTGTTTCACCCTCAGAAGAAAGCAGCTTTaGCATCAGACCTGGGTTCTA +
Preference number: 2 (lower is better)
Translates to: CQQREQHDSDRVGFCFTLRRKQL*HQTWVL
Trigger: TAGAACCCAGGTCTGATGCCAAAGCTGCTTTCTTCT...GAGGGTGAAACAAAATCCAACCCTGTCAGAATCATGCTGTTCTCTTTGCTGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR TCA 72 bp GGCAGGCAGGGGCCCGACGGAGGGCGGTCACAGAGATaGTCCCCGTGTCAGTCCCTGGGAGCAGGGAGCAGC +
Preference number: 3 (lower is better)
Translates to: GRQGPDGGRSQR*SPCQSLGAGSS
Trigger: GCTGCTCCCTGCTCCCAGGGACTGACACGGGGATCATCTCTGTGACCGCCCTCCGTCGGGCCCCTGCCTGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CCA 72 bp GCAGGCGGGCCCCAGAACTGGCTCCCCCGCAGCAGGTaGCTTTGGTCCATCACGTGTCAGGGCCGCTTGTGT +
Preference number: 3 (lower is better)
Translates to: AGGPQNWLPRSR*LWSITCQGRLC
Trigger: ACACAAGCGGCCCTGACACGTGATGGACCAAAGCCACCTGCTGCGGGGGAGCCAGTTCTGGGGCCCGCCTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR TCA 72 bp GGCTGGCCTGTGTCAGGCCTCGCCCACGCCGCCTTATaGCAAATAGAGGCCGGTGCCAAGGAGGTGGCTACA +
Preference number: 3 (lower is better)
Translates to: GWPVSGLAHAAL*QIEAGAKEVAT
Trigger: TGTAGCCACCTCCTTGGCACCGGCCTCTATTTGTCATAAGGCGGCGTGGGCGAGGCCTGACACAGGCCAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CCA 72 bp CAGCCCGTCAACCAGAGATGGAGACGAAGGCCAGCGTaGCTCTCACAGGGCAGCGCTTCTCAGAACCCCTGG +
Preference number: 3 (lower is better)
Translates to: QPVNQRWRRRPA*LSQGSASQNPW
Trigger: CCAGGGGTTCTGAGAAGCGCTGCCCTGTGAGAGCCACGCTGGCCTTCGTCTCCATCTCTGGTTGACGGGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CAA 90 bp AGGATGGAAAAGATGCTGGAGGCTTTGCTGGCTTTCAGGATGCCGGGAGCCCCACCATCCACGGGGACCTaGGGCCCCTTCTCCTGGAGG +
Preference number: 3 (lower is better)
Translates to: RMEKMLEALLAFRMPGAPPSTGT*GPFSWR
Trigger: CCTCCAGGAGAAGGGGCCCAAGGTCCCCGTGGATGG...TGGGGCTCCCGGCATCCTGAAAGCCAGCAAAGCCTCCAGCATCTTTTCCATCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CAA 90 bp TTCCCTAGGGCTGATGAAACTTGCTCCGACAAGCCAGGCCACTGGGAGGCACCTAGGAAGAGCACAGCCTaGCGTGGAGGGGAGAAGGCA +
Preference number: 3 (lower is better)
Translates to: FPRADETCSDKPGHWEAPRKSTA*RGGEKA
Trigger: TGCCTTCTCCCCTCCACGCAAGGCTGTGCTCTTCCT...AGGTGCCTCCCAGTGGCCTGGCTTGTCGGAGCAAGTTTCATCAGCCCTAGGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CAA 90 bp TTAAAGTGCCAAGCTGTATCGTCTTTGGTCAGGAGCTGCCCCTTAGTCTCTAAGACGTGTCAGGGCCGCTaGTGTCCGGCTGGCCCCGGG +
Preference number: 3 (lower is better)
Translates to: LKCQAVSSLVRSCPLVSKTCQGR*CPAGPG
Trigger: CCCGGGGCCAGCCGGACACAAGCGGCCCTGACACGT...CTTAGAGACTAAGGGGCAGCTCCTGACCAAAGACGATACAGCTTGGCACTTTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR TCA 72 bp ACAGCACTGCACATGTCACGCAGCAGGAGACGTGCCTaGCGCAGACTGGCTTCTGAGCATAAGCCAGAAGTC +
Preference number: 3 (lower is better)
Translates to: TALHMSRSRRRA*RRLASEHKPEV
Trigger: GACTTCTGGCTTATGCTCAGAAGCCAGTCTGCGTCAGGCACGTCTCCTGCTGCGTGACATGTGCAGTGCTGT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CCA 72 bp CTAGGTGTCAGGTTTCACACATCATCCCAGGAAGTATaGGGAGGCGGGGCGCAGACACTCAAACGGACACAC +
Preference number: 3 (lower is better)
Translates to: LGVRFHTSSQEV*GGGAQTLKRTH
Trigger: GTGTGTCCGTTTGAGTGTCTGCGCCCCGCCTCCCCATACTTCCTGGGATGATGTGTGAAACCTGACACCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR GCA 72 bp TTAAAGTGCCAAGCTGTATCGTCTTTGGTCAGGAGCTaGCCCTTAGTCTCTAAGAGCCTGGGGTCCAGGGCT +
Preference number: 3 (lower is better)
Translates to: LKCQAVSSLVRS*PLVSKSLGSRA
Trigger: AGCCCTGGACCCCAGGCTCTTAGAGACTAAGGGGCAGCTCCTGACCAAAGACGATACAGCTTGGCACTTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR GCA 72 bp GCCCTCAGGGTCACACCTGCTGTTAATGCTTTAAAGTaGCAAGCTGTATCGTCTTTGGTCAGGAGCTGCCCC +
Preference number: 3 (lower is better)
Translates to: ALRVTPAVNALK*QAVSSLVRSCP
Trigger: GGGGCAGCTCCTGACCAAAGACGATACAGCTTGGCACTTTAAAGCATTAACAGCAGGTGTGACCCTGAGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR GCA 72 bp AAAAGGGGAGGAAGGAAAGCGATTCTAAAGACAGATTaGTGCTGGTCTGTCCCGACCCAGGGTCACAGTGTC +
Preference number: 3 (lower is better)
Translates to: KRGGRKAILKTD*CWSVPTQGHSV
Trigger: GACACTGTGACCCTGGGTCGGGACAGACCAGCAGCAATCTGTCTTTAGAATCGCTTTCCTTCCTCCCCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CCA 72 bp GGAGGAAGGAAAGCGATTCTAAAGACAGATTGCTGCTaGTCTGTCCCGACCCAGGGTCACAGTGTCAGCAAA +
Preference number: 3 (lower is better)
Translates to: GGRKAILKTDCC*SVPTQGHSVSK
Trigger: TTTGCTGACACTGTGACCCTGGGTCGGGACAGACCAGCAGCAATCTGTCTTTAGAATCGCTTTCCTTCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CCA 72 bp ACATGTCACGCAGCAGGAGACGTGCCTGACGCAGACTaGCTTCTGAGCATAAGCCAGAAGTCACTGAATAAA +
Preference number: 3 (lower is better)
Translates to: TCHAAGDVPDAD*LLSISQKSLNK
Trigger: TTTATTCAGTGACTTCTGGCTTATGCTCAGAAGCCAGTCTGCGTCAGGCACGTCTCCTGCTGCGTGACATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CAA 90 bp AGGATGGAAAAGATGCTGGAGGCTTTGCTGGCTTTCAGGATGCCGGGAGCCCCAGCAGACTTCAAACACTaGCATTTTCACGGAAATCAA +
Preference number: 3 (lower is better)
Translates to: RMEKMLEALLAFRMPGAPADFKH*HFHGNQ
Trigger: TTGATTTCCGTGAAAATGCAAGTGTTTGAAGTCTGC...TGGGGCTCCCGGCATCCTGAAAGCCAGCAAAGCCTCCAGCATCTTTTCCATCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CCA 72 bp ACAGCTTTCAGGAAGCAGGATGCCCCCAGGGAAATTTaGGTCCTTAGAAAGAGAGAAGGGACTAGAAATGCT +
Preference number: 3 (lower is better)
Translates to: TAFRKQDAPREI*VLRKREGTRNA
Trigger: AGCATTTCTAGTCCCTTCTCTCTTTCTAAGGACCCAAATTTCCCTGGGGGCATCCTGCTTCCTGAAAGCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CAA 90 bp TGTGTGGAAAGGCACCAGATGGTTTGTTATGAAACACATTTTGGTCAGAAAATACCGCAGCAGGTGGCTTaGGTCCATCACGTGTCAGGG +
Preference number: 3 (lower is better)
Translates to: CVERHQMVCYETHFGQKIPQQVA*VHHVSG
Trigger: CCCTGACACGTGATGGACCAAAGCCACCTGCTGCGG...TATTTTCTGACCAAAATGTGTTTCATAACAAACCATCTGGTGCCTTTCCACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CAA 90 bp GCTTTAAAGTGCCAAGCTGTATCGTCTTTGGTCAGGAGCTGCCCCTTAGTCTCTTATTCAAGGCATCTTTaGGTTCTCAGAGAAAGAGCA +
Preference number: 3 (lower is better)
Translates to: ALKCQAVSSLVRSCPLVSYSRHL*VLRERA
Trigger: TGCTCTTTCTCTGAGAACCAAAAGATGCCTTGAATA...AGAGACTAAGGGGCAGCTCCTGACCAAAGACGATACAGCTTGGCACTTTAAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR-3UTR CAA 90 bp GAAAGGCACCAGATGGTTTGTTATGAAACACATTTTGGTCAGAAAATAGCTGGGGAGAAGAAAGCAGCTTaGGCATCAGACCTGGGTTCT +
Preference number: 3 (lower is better)
Translates to: ERHQMVCYETHFGQKIAGEKKAA*ASDLGS
Trigger: AGAACCCAGGTCTGATGCCAAAGCTGCTTTCTTCTC...CCCAGCTATTTTCTGACCAAAATGTGTTTCATAACAAACCATCTGGTGCCTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp ACTGGCTCCCCCGCAGCAGGTGGCTTTGGTCCATCACGTGTCAGGGCCGCTTGTGAGGGGGTGCAGTCTTaGCGGGCCCCCAGGACGTCC +
Preference number: 4 (lower is better)
Translates to: TGSPAAGGFGPSRVRAACEGVQS*RAPRTS
Trigger: GGACGTCCTGGGGGCCCGCCAAGACTGCACCCCCTC...ACAAGCGGCCCTGACACGTGATGGACCAAAGCCACCTGCTGCGGGGGAGCCAGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp CCCCCGCAGCAGGTGGCTTTGGTCCATCACGTGTCAGGGCCGCTTGTGTCCGGCCAAACCCCCGCCTGCTaGGCCCTGAGGAAGCAGAGC +
Preference number: 4 (lower is better)
Translates to: PPQQVALVHHVSGPLVSGQTPAC*ALRKQS
Trigger: GCTCTGCTTCCTCAGGGCCCAGCAGGCGGGGGTTTG...GCCGGACACAAGCGGCCCTGACACGTGATGGACCAAAGCCACCTGCTGCGGGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp GCAGGGGCCCGACGGAGGGCGGTCACAGAGATGATCCCCGTGTCAGTCCCTGGGAGACGAAGGCCAGCGTaGCTCTCACAGGGCAGCGCT +
Preference number: 4 (lower is better)
Translates to: AGARRRAVTEMIPVSVPGRRRPA*LSQGSA
Trigger: AGCGCTGCCCTGTGAGAGCCACGCTGGCCTTCGTCT...CCCAGGGACTGACACGGGGATCATCTCTGTGACCGCCCTCCGTCGGGCCCCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR TCA 90 bp GCAGGGGCCCGACGGAGGGCGGTCACAGAGATGATCCCCGTGTCAGTCCCTGGGCCAGTGTCCAGGACCTaGGGGTTTGTCCGAGACTGG +
Preference number: 4 (lower is better)
Translates to: AGARRRAVTEMIPVSVPGPVSRT*GFVRDW
Trigger: CCAGTCTCGGACAAACCCTCAGGTCCTGGACACTGG...CCCAGGGACTGACACGGGGATCATCTCTGTGACCGCCCTCCGTCGGGCCCCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp GAAAAGATGCTGGAGGCTTTGCTGGCTTTCAGGATGCCGGGAGCCCCACGGGGGCCGCTTGTGTCCGGCTaGCCCCGGGCCCTCAGAAGC +
Preference number: 4 (lower is better)
Translates to: EKMLEALLAFRMPGAPRGPLVSG*PRALRS
Trigger: GCTTCTGAGGGCCCGGGGCCAGCCGGACACAAGCGG...CCCCCGTGGGGCTCCCGGCATCCTGAAAGCCAGCAAAGCCTCCAGCATCTTTTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR TCA 90 bp CCCCCGCAGCAGGTGGCTTTGGTCCATCACGTGTCAGGGCCGCTTGTGTCCGGCAGCAGGAGACGTGCCTaGCGCAGACTGGCTTCTGAG +
Preference number: 4 (lower is better)
Translates to: PPQQVALVHHVSGPLVSGSRRRA*RRLASE
Trigger: CTCAGAAGCCAGTCTGCGTCAGGCACGTCTCCTGCT...GCCGGACACAAGCGGCCCTGACACGTGATGGACCAAAGCCACCTGCTGCGGGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp GCAGGGGCCCGACGGAGGGCGGTCACAGAGATGATCCCCGTGTCAGTCCCTGGGCTCAATGCAGCACCATaGAGGAGCCCTCAGGGTCAC +
Preference number: 4 (lower is better)
Translates to: AGARRRAVTEMIPVSVPGLNAAP*RSPQGH
Trigger: GTGACCCTGAGGGCTCCTCCATGGTGCTGCATTGAG...CCCAGGGACTGACACGGGGATCATCTCTGTGACCGCCCTCCGTCGGGCCCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp AGGCAGGCAGGGGCCCGACGGAGGGCGGTCACAGAGATGATCCCCGTGTCAGTCGACACATTCCCCTTCTaGGGCTGTGGGTGCTCTCCT +
Preference number: 4 (lower is better)
Translates to: RQAGARRRAVTEMIPVSVDTFPF*GCGCSP
Trigger: AGGAGAGCACCCACAGCCGCAGAAGGGGAATGTGTC...GACTGACACGGGGATCATCTCTGTGACCGCCCTCCGTCGGGCCCCTGCCTGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CAA 72 bp GGGAGGCACCTCAGGATGGAAAAGATGCTGGAGGCTTaGCTGGCTTTCAGGATGCCGGGAGCCCCACGGGGG +
Preference number: 4 (lower is better)
Translates to: GRHLRMEKMLEA*LAFRMPGAPRG
Trigger: CCCCCGTGGGGCTCCCGGCATCCTGAAAGCCAGCAAAGCCTCCAGCATCTTTTCCATCCTGAGGTGCCTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp ACTGGCTCCCCCGCAGCAGGTGGCTTTGGTCCATCACGTGTCAGGGCCGCTTGTCCTGCTCTGTGCCGCTaGTGTCAGGCTTGTCCCAGT +
Preference number: 4 (lower is better)
Translates to: TGSPAAGGFGPSRVRAACPALCR*CQACPS
Trigger: ACTGGGACAAGCCTGACAGCAGCGGCACAGAGCAGG...ACAAGCGGCCCTGACACGTGATGGACCAAAGCCACCTGCTGCGGGGGAGCCAGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp AGGCAGGCAGGGGCCCGACGGAGGGCGGTCACAGAGATGATCCCCGTGTCAGTCAGGCTCTGGTTGTGCTaGCTCTGGGCGATGTATGCA +
Preference number: 4 (lower is better)
Translates to: RQAGARRRAVTEMIPVSVRLWLC*LWAMYA
Trigger: TGCATACATCGCCCAGAGCCAGCACAACCAGAGCCT...GACTGACACGGGGATCATCTCTGTGACCGCCCTCCGTCGGGCCCCTGCCTGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp CAGGAAGTATGGGGAGGCGGGGCGCAGACACTCAAACGGACACACAGAAACCAGGAGGGCTGGGAGAGGTaGCAGGCGGGCCCCAGAACT +
Preference number: 4 (lower is better)
Translates to: QEVWGGGAQTLKRTHRNQEGWER*QAGPRT
Trigger: AGTTCTGGGGCCCGCCTGCCACCTCTCCCAGCCCTC...CTGGTTTCTGTGTGTCCGTTTGAGTGTCTGCGCCCCGCCTCCCCATACTTCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp ACTGGCTCCCCCGCAGCAGGTGGCTTTGGTCCATCACGTGTCAGGGCCGCTTGTTCATCCCAGGAAGTATaGGGAGGCGGGGCGCAGACA +
Preference number: 4 (lower is better)
Translates to: TGSPAAGGFGPSRVRAACSSQEV*GGGAQT
Trigger: TGTCTGCGCCCCGCCTCCCCATACTTCCTGGGATGA...ACAAGCGGCCCTGACACGTGATGGACCAAAGCCACCTGCTGCGGGGGAGCCAGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp AAGCACAGGTGGAGACCATCCACGGGGACCTTGGGCCCCTTCTCCTGGAGGAAGCCGGTGCCAAGGAGGTaGCTACAGAGCAGGGGCAAG +
Preference number: 4 (lower is better)
Translates to: KHRWRPSTGTLGPFSWRKPVPRR*LQSRGK
Trigger: CTTGCCCCTGCTCTGTAGCCACCTCCTTGGCACCGG...CTTCCTCCAGGAGAAGGGGCCCAAGGTCCCCGTGGATGGTCTCCACCTGTGCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp ACACATCATCCCAGGAAGTATGGGGAGGCGGGGCGCAGACACTCAAACGGACACCCCTCGTGCCAAGGCTaGCCTGTGTCAGGCCTCGCC +
Preference number: 4 (lower is better)
Translates to: THHPRKYGEAGRRHSNGHPSCQG*PVSGLA
Trigger: GGCGAGGCCTGACACAGGCCAGCCTTGGCACGAGGG...GTGTCCGTTTGAGTGTCTGCGCCCCGCCTCCCCATACTTCCTGGGATGATGTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR TCA 90 bp CTGAAATCCAACAGCTTTCAGGAAGCAGGATGCCCCCAGGGAAATTTGGGTCCTCCCGCCCCGCCGACTTaGGCGCGTCCATGGCCCGCT +
Preference number: 4 (lower is better)
Translates to: LKSNSFQEAGCPQGNLGPPAPPT*ARPWPA
Trigger: AGCGGGCCATGGACGCGCTCAAGTCGGCGGGGCGGG...AGGACCCAAATTTCCCTGGGGGCATCCTGCTTCCTGAAAGCTGTTGGATTTCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp CCCCCGCAGCAGGTGGCTTTGGTCCATCACGTGTCAGGGCCGCTTGTGTCCGGCCAGGATAATTCCCCGTaGCGACACCTTCAGAGTCAC +
Preference number: 4 (lower is better)
Translates to: PPQQVALVHHVSGPLVSGQDNSP*RHLQSH
Trigger: GTGACTCTGAAGGTGTCGCCACGGGGAATTATCCTG...GCCGGACACAAGCGGCCCTGACACGTGATGGACCAAAGCCACCTGCTGCGGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp ACTGGCTCCCCCGCAGCAGGTGGCTTTGGTCCATCACGTGTCAGGGCCGCTTGTCTGAAGAGGTCATCCTaGTCTGTGCCGCTGCTGTCA +
Preference number: 4 (lower is better)
Translates to: TGSPAAGGFGPSRVRAACLKRSS*SVPLLS
Trigger: TGACAGCAGCGGCACAGAGCAGGATGACCTCTTCAG...ACAAGCGGCCCTGACACGTGATGGACCAAAGCCACCTGCTGCGGGGGAGCCAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp GGCAGAGCTTGCTCCAGGAGAGCAAGCGGGAGCCGATTACAGCACTGCACATGTCATCCACGGGGACCTTaGGCCCCTTCTCCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: GRACSRRASGSRLQHCTCHPRGP*APSPGG
Trigger: TCCTCCAGGAGAAGGGGCCCAAGGTCCCCGTGGATG...ACATGTGCAGTGCTGTAATCGGCTCCCGCTTGCTCTCCTGGAGCAAGCTCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp TCCCACCCCACCCTCAGGCACCTCCGTCTAAGGTGTCCGGTTACTCCAGGTAAGGGTTCCAAGCACAGGTaGAGACCATCCACGGGGACC +
Preference number: 4 (lower is better)
Translates to: SHPTLRHLRLRCPVTPGKGSKHR*RPSTGT
Trigger: GGTCCCCGTGGATGGTCTCCACCTGTGCTTGGAACC...CTTACCTGGAGTAACCGGACACCTTAGACGGAGGTGCCTGAGGGTGGGGTGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp ACTGGCTCCCCCGCAGCAGGTGGCTTTGGTCCATCACGTGTCAGGGCCGCTTGTAAGACAGATTGCTGCTaGTCTGTCCCGACCCAGGGT +
Preference number: 4 (lower is better)
Translates to: TGSPAAGGFGPSRVRAACKTDCC*SVPTQG
Trigger: ACCCTGGGTCGGGACAGACCAGCAGCAATCTGTCTT...ACAAGCGGCCCTGACACGTGATGGACCAAAGCCACCTGCTGCGGGGGAGCCAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR TCA 90 bp TTCCCTAGGGCTGATGAAACTTGCTCCGACAAGCCAGGCCACTGGGAGGCACCTCGGGCCCTCAGAAGCTaGAGAGGTCATCCTGCTCTG +
Preference number: 4 (lower is better)
Translates to: FPRADETCSDKPGHWEAPRALRS*RGHPAL
Trigger: CAGAGCAGGATGACCTCTTCAGCTTCTGAGGGCCCG...AGGTGCCTCCCAGTGGCCTGGCTTGTCGGAGCAAGTTTCATCAGCCCTAGGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp AAGCACAGGTGGAGACCATCCACGGGGACCTTGGGCCCCTTCTCCTGGAGGAAGTCGAGGCTCTGGTTGTaGTGGCTCTGGGCGATGTAT +
Preference number: 4 (lower is better)
Translates to: KHRWRPSTGTLGPFSWRKSRLWL*WLWAMY
Trigger: ATACATCGCCCAGAGCCAGCACAACCAGAGCCTCGA...CTTCCTCCAGGAGAAGGGGCCCAAGGTCCCCGTGGATGGTCTCCACCTGTGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp TCCCACCCCACCCTCAGGCACCTCCGTCTAAGGTGTCCGGTTACTCCAGGTAAGCCAGCAGGTTCCCAGTaGCGACCAAGCTCTTCAAGG +
Preference number: 4 (lower is better)
Translates to: SHPTLRHLRLRCPVTPGKPAGSQ*RPSSSR
Trigger: CCTTGAAGAGCTTGGTCGCCACTGGGAACCTGCTGG...CTTACCTGGAGTAACCGGACACCTTAGACGGAGGTGCCTGAGGGTGGGGTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp ACACATCATCCCAGGAAGTATGGGGAGGCGGGGCGCAGACACTCAAACGGACACCGCAGCAGGTGGCTTTaGTCCATCACGTGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: THHPRKYGEAGRRHSNGHRSRWL*SITCQG
Trigger: GCCCTGACACGTGATGGACCAAAGCCACCTGCTGCG...GTGTCCGTTTGAGTGTCTGCGCCCCGCCTCCCCATACTTCCTGGGATGATGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp TGTCAGTCCCTGGGAGCAGGGAGCAGCCAGTTACACTGGTTCCAAGCACAGGTGCTCCCCCGCAGCAGGTaGCTTTGGTCCATCACGTGT +
Preference number: 4 (lower is better)
Translates to: CQSLGAGSSQLHWFQAQVLPRSR*LWSITC
Trigger: ACACGTGATGGACCAAAGCCACCTGCTGCGGGGGAG...CACCTGTGCTTGGAACCAGTGTAACTGGCTGCTCCCTGCTCCCAGGGACTGACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR TCA 90 bp GGCAGAGCTTGCTCCAGGAGAGCAAGCGGGAGCCGATTACAGCACTGCACATGTAATCTCTCCCCTGCCTaGCTGGCTGCAGCTCTGATC +
Preference number: 4 (lower is better)
Translates to: GRACSRRASGSRLQHCTCNLSPA*LAAALI
Trigger: GATCAGAGCTGCAGCCAGTCAGGCAGGGGAGAGATT...ACATGTGCAGTGCTGTAATCGGCTCCCGCTTGCTCTCCTGGAGCAAGCTCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp AAGGCAGGCAGGGGCCCGACGGAGGGCGGTCACAGAGATGATCCCCGTGTCAGTTCTTCCTTGGACACCTaGCAAAACTCAAAGGCGACT +
Preference number: 4 (lower is better)
Translates to: KAGRGPTEGGHRDDPRVSSSLDT*QNSKAT
Trigger: AGTCGCCTTTGAGTTTTGGCAGGTGTCCAAGGAAGA...ACTGACACGGGGATCATCTCTGTGACCGCCCTCCGTCGGGCCCCTGCCTGCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp CAGGAAGTATGGGGAGGCGGGGCGCAGACACTCAAACGGACACACAGAAACCAGTGCTGGAGGCTTTGCTaGCTTTCAGGATGCCGGGAG +
Preference number: 4 (lower is better)
Translates to: QEVWGGGAQTLKRTHRNQCWRLC*LSGCRE
Trigger: CTCCCGGCATCCTGAAAGCCAGCAAAGCCTCCAGCA...CTGGTTTCTGTGTGTCCGTTTGAGTGTCTGCGCCCCGCCTCCCCATACTTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR TCA 90 bp AGGGGAGGAAGGAAAGCGATTCTAAAGACAGATTGCTGCTGGTCTGTCCCGACCGCCCACGCCGCCTTATaGCAAATAGAGGCCGGTGCC +
Preference number: 4 (lower is better)
Translates to: RGGRKAILKTDCCWSVPTAHAAL*QIEAGA
Trigger: GGCACCGGCCTCTATTTGTCATAAGGCGGCGTGGGC...GGTCGGGACAGACCAGCAGCAATCTGTCTTTAGAATCGCTTTCCTTCCTCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp GGCAGAGCTTGCTCCAGGAGAGCAAGCGGGAGCCGATTACAGCACTGCACATGTGCTCCCAGACAACACTaGTGCCACTCAAGGCTTGTG +
Preference number: 4 (lower is better)
Translates to: GRACSRRASGSRLQHCTCAPRQH*CHSRLV
Trigger: CACAAGCCTTGAGTGGCAGCAGTGTTGTCTGGGAGC...ACATGTGCAGTGCTGTAATCGGCTCCCGCTTGCTCTCCTGGAGCAAGCTCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp GACGCAGACTGGCTTCTGAGCATAAGCCAGAAGTCACTGAATAAATATTCAAGGGGCCGCCGCCGCCGCTaGCGCAGCCAAAACTCCGTC +
Preference number: 4 (lower is better)
Translates to: DADWLLSISQKSLNKYSRGRRRR*RSQNSV
Trigger: GACGGAGTTTTGGCTGCGGCAGCGGCGGCGGCGGCC...CCTTGAATATTTATTCAGTGACTTCTGGCTTATGCTCAGAAGCCAGTCTGCGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp ACACATCATCCCAGGAAGTATGGGGAGGCGGGGCGCAGACACTCAAACGGACACGAAAAATCTCTCCCCTaGCTGACTGGCTGCAGCTCT +
Preference number: 4 (lower is better)
Translates to: THHPRKYGEAGRRHSNGHEKSLP*LTGCSS
Trigger: AGAGCTGCAGCCAGTCAGGCAGGGGAGAGATTTTTC...GTGTCCGTTTGAGTGTCTGCGCCCCGCCTCCCCATACTTCCTGGGATGATGTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp AGCGGGAGCCGATTACAGCACTGCACATGTCACGCAGCAGGAGACGTGCCTGACTCTTTGGTCAGGAGCTaGCCCTTAGTCTCTAAGAGC +
Preference number: 4 (lower is better)
Translates to: SGSRLQHCTCHAAGDVPDSLVRS*PLVSKS
Trigger: GCTCTTAGAGACTAAGGGGCAGCTCCTGACCAAAGA...GTCAGGCACGTCTCCTGCTGCGTGACATGTGCAGTGCTGTAATCGGCTCCCGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp AAGCACAGGTGGAGACCATCCACGGGGACCTTGGGCCCCTTCTCCTGGAGGAAGATTCTAAAGACAGATTaGTGCTGGTCTGTCCCGACC +
Preference number: 4 (lower is better)
Translates to: KHRWRPSTGTLGPFSWRKILKTD*CWSVPT
Trigger: GGTCGGGACAGACCAGCAGCAATCTGTCTTTAGAAT...CTTCCTCCAGGAGAAGGGGCCCAAGGTCCCCGTGGATGGTCTCCACCTGTGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp GGCTACAGAGCAGGGGCAAGGAAGTTATCCTCATGTTCTGATAATGACCCTGCATCTGCTTGGCCAAGCTaGGGCTCCGGATCAGCGCCC +
Preference number: 4 (lower is better)
Translates to: GYRAGARKLSSCSDNDPASAWPS*GSGSAP
Trigger: GGGCGCTGATCCGGAGCCCCAGCTTGGCCAAGCAGA...TGCAGGGTCATTATCAGAACATGAGGATAACTTCCTTGCCCCTGCTCTGTAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp GACGCAGACTGGCTTCTGAGCATAAGCCAGAAGTCACTGAATAAATATTCAAGGGGCGGGCCCCAGAACTaGCTCCCCCGCAGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: DADWLLSISQKSLNKYSRGGPQN*LPRSRW
Trigger: CCACCTGCTGCGGGGGAGCCAGTTCTGGGGCCCGCC...CCTTGAATATTTATTCAGTGACTTCTGGCTTATGCTCAGAAGCCAGTCTGCGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp AGGATGGAAAAGATGCTGGAGGCTTTGCTGGCTTTCAGGATGCCGGGAGCCCCAGTGCCTGACGCAGACTaGCTTCTGAGCATAAGCCAG +
Preference number: 4 (lower is better)
Translates to: RMEKMLEALLAFRMPGAPVPDAD*LLSISQ
Trigger: CTGGCTTATGCTCAGAAGCCAGTCTGCGTCAGGCAC...TGGGGCTCCCGGCATCCTGAAAGCCAGCAAAGCCTCCAGCATCTTTTCCATCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp ACACATCATCCCAGGAAGTATGGGGAGGCGGGGCGCAGACACTCAAACGGACACGGAGGCACCTCAGGATaGAAAAGATGCTGGAGGCTT +
Preference number: 4 (lower is better)
Translates to: THHPRKYGEAGRRHSNGHGGTSG*KRCWRL
Trigger: AAGCCTCCAGCATCTTTTCCATCCTGAGGTGCCTCC...GTGTCCGTTTGAGTGTCTGCGCCCCGCCTCCCCATACTTCCTGGGATGATGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR TCA 90 bp AGGGGAGGAAGGAAAGCGATTCTAAAGACAGATTGCTGCTGGTCTGTCCCGACCCTTTGGTCACAGTCCTaGTACCCACAGCCAGGGCAG +
Preference number: 4 (lower is better)
Translates to: RGGRKAILKTDCCWSVPTLWSQS*YPQPGQ
Trigger: CTGCCCTGGCTGTGGGTATCAGGACTGTGACCAAAG...GGTCGGGACAGACCAGCAGCAATCTGTCTTTAGAATCGCTTTCCTTCCTCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp CAGGAAGTATGGGGAGGCGGGGCGCAGACACTCAAACGGACACACAGAAACCAGACAGCAAGACTTGTCTaGAGACACACAGGAGGCACA +
Preference number: 4 (lower is better)
Translates to: QEVWGGGAQTLKRTHRNQTARLV*RHTGGT
Trigger: TGTGCCTCCTGTGTGTCTGCAGACAAGTCTTGCTGT...CTGGTTTCTGTGTGTCCGTTTGAGTGTCTGCGCCCCGCCTCCCCATACTTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp AGCGGGAGCCGATTACAGCACTGCACATGTCACGCAGCAGGAGACGTGCCTGACACGTTCTCAATGAGCTaGTTGGTGAGGTTGTCTGTC +
Preference number: 4 (lower is better)
Translates to: SGSRLQHCTCHAAGDVPDTFSMS*LVRLSV
Trigger: GACAGACAACCTCACCAACCAGCTCATTGAGAACGT...GTCAGGCACGTCTCCTGCTGCGTGACATGTGCAGTGCTGTAATCGGCTCCCGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp TTAAAGTGCCAAGCTGTATCGTCTTTGGTCAGGAGCTGCCCCTTAGTCTCTAAGTCTTCAAGGAGGGGGTaGAGTCTTGGCGGGCCCCCA +
Preference number: 4 (lower is better)
Translates to: LKCQAVSSLVRSCPLVSKSSRRG*SLGGPP
Trigger: TGGGGGCCCGCCAAGACTGCACCCCCTCCTTGAAGA...CTTAGAGACTAAGGGGCAGCTCCTGACCAAAGACGATACAGCTTGGCACTTTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp GGAGGTGGCTACAGAGCAGGGGCAAGGAAGTTATCCTCATGTTCTGATAATGACGTGCCATCTTCCGCTTaGTGCAGAGGAAGGCGTGGC +
Preference number: 4 (lower is better)
Translates to: GGGYRAGARKLSSCSDNDVPSSA*CRGRRG
Trigger: GCCACGCCTTCCTCTGCACCAAGCGGAAGATGGCAC...GTCATTATCAGAACATGAGGATAACTTCCTTGCCCCTGCTCTGTAGCCACCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp GCTTTAAAGTGCCAAGCTGTATCGTCTTTGGTCAGGAGCTGCCCCTTAGTCTCTCCCAGACAACACTGCTaGCACTCAAGGCTTGTGGCC +
Preference number: 4 (lower is better)
Translates to: ALKCQAVSSLVRSCPLVSPRQHC*HSRLVA
Trigger: GGCCACAAGCCTTGAGTGGCAGCAGTGTTGTCTGGG...AGAGACTAAGGGGCAGCTCCTGACCAAAGACGATACAGCTTGGCACTTTAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp CAGGGTTGGATTTTGTTTCACCCTCGGAATGAGCAGACTTCAAACACTTGCATTGCTCAAACCCCCGCCTaGTGGGCCCTGAGGAAGCAG +
Preference number: 4 (lower is better)
Translates to: QGWILFHPRNEQTSNTCIAQTPA*WALRKQ
Trigger: CTGCTTCCTCAGGGCCCAGCAGGCGGGGGTTTGAGC...AATGCAAGTGTTTGAAGTCTGCTCATTCCGAGGGTGAAACAAAATCCAACCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp AGCGGGAGCCGATTACAGCACTGCACATGTCACGCAGCAGGAGACGTGCCTGACTCTCTTTCTCTTCCTTaGACACCTGCCAAAACTCAA +
Preference number: 4 (lower is better)
Translates to: SGSRLQHCTCHAAGDVPDSLSLP*TPAKTQ
Trigger: TTGAGTTTTGGCAGGTGTCCAAGGAAGAGAAAGAGA...GTCAGGCACGTCTCCTGCTGCGTGACATGTGCAGTGCTGTAATCGGCTCCCGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR TCA 90 bp GAAAGGCACCAGATGGTTTGTTATGAAACACATTTTGGTCAGAAAATAGCTGGGTGGTGGTGTTGGCGCTaGCCGTGGACAGCGGGGCCT +
Preference number: 4 (lower is better)
Translates to: ERHQMVCYETHFGQKIAGWWCWR*PWTAGP
Trigger: AGGCCCCGCTGTCCACGGTCAGCGCCAACACCACCA...CCCAGCTATTTTCTGACCAAAATGTGTTTCATAACAAACCATCTGGTGCCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp TTCCCTAGGGCTGATGAAACTTGCTCCGACAAGCCAGGCCACTGGGAGGCACCTGCATCTTGTCTGCTGTaGAATAGGAGATCCTGTATA +
Preference number: 4 (lower is better)
Translates to: FPRADETCSDKPGHWEAPASCLL*NRRSCI
Trigger: TATACAGGATCTCCTATTGCACAGCAGACAAGATGC...AGGTGCCTCCCAGTGGCCTGGCTTGTCGGAGCAAGTTTCATCAGCCCTAGGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp TTAAAGTGCCAAGCTGTATCGTCTTTGGTCAGGAGCTGCCCCTTAGTCTCTAAGACAGCTCCTCACCCTTaGGCTGCTCCACTAGCGTCA +
Preference number: 4 (lower is better)
Translates to: LKCQAVSSLVRSCPLVSKTAPHP*AAPLAS
Trigger: TGACGCTAGTGGAGCAGCCCAAGGGTGAGGAGCTGT...CTTAGAGACTAAGGGGCAGCTCCTGACCAAAGACGATACAGCTTGGCACTTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp GGCTACAGAGCAGGGGCAAGGAAGTTATCCTCATGTTCTGATAATGACCCTGCAGGGTTTGTCCGAGACTaGGCAAGCCTCGAAAACGCT +
Preference number: 4 (lower is better)
Translates to: GYRAGARKLSSCSDNDPAGFVRD*ASLENA
Trigger: AGCGTTTTCGAGGCTTGCCCAGTCTCGGACAAACCC...TGCAGGGTCATTATCAGAACATGAGGATAACTTCCTTGCCCCTGCTCTGTAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp GAAATCCAACAGCTTTCAGGAAGCAGGATGCCCCCAGGGAAATTTGGGTCCTTATTCAGAGTCACCTTCTaGAGCTTCTTCCCACTGGCC +
Preference number: 4 (lower is better)
Translates to: EIQQLSGSRMPPGKFGSLFRVTF*SFFPLA
Trigger: GGCCAGTGGGAAGAAGCTGCAGAAGGTGACTCTGAA...TAAGGACCCAAATTTCCCTGGGGGCATCCTGCTTCCTGAAAGCTGTTGGATTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp GCTTTAAAGTGCCAAGCTGTATCGTCTTTGGTCAGGAGCTGCCCCTTAGTCTCTCTAAAGACAGATTGCTaGTGGTCTGTCCCGACCCAG +
Preference number: 4 (lower is better)
Translates to: ALKCQAVSSLVRSCPLVSLKTDC*WSVPTQ
Trigger: CTGGGTCGGGACAGACCAGCAGCAATCTGTCTTTAG...AGAGACTAAGGGGCAGCTCCTGACCAAAGACGATACAGCTTGGCACTTTAAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp TGTCAGCAAAGAGAACAGCATGATTCTGACAGGGTTGGATTTTGTTTCACCCTCCCCGTCAACCAGAGATaGAGACGAAGGCCAGCGTGG +
Preference number: 4 (lower is better)
Translates to: CQQREQHDSDRVGFCFTLPVNQR*RRRPAW
Trigger: CCACGCTGGCCTTCGTCTCCATCTCTGGTTGACGGG...GAGGGTGAAACAAAATCCAACCCTGTCAGAATCATGCTGTTCTCTTTGCTGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
3UTR CAA 72 bp TGGGTCCTTAGAAAGAGAGAAGGGACTAGAAATGCTTaGGTCACAGTCCTGATACCCACAGCCAGGGCAGAG +
Preference number: 4 (lower is better)
Translates to: WVLRKREGTRNA*VTVLIPTARAE
Trigger: CTCTGCCCTGGCTGTGGGTATCAGGACTGTGACCAAAGCATTTCTAGTCCCTTCTCTCTTTCTAAGGACCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR TCA 90 bp GAAAGGCACCAGATGGTTTGTTATGAAACACATTTTGGTCAGAAAATAGCTGGGGGGCGGTCACAGAGATaGTCCCCGTGTCAGTCCCTG +
Preference number: 4 (lower is better)
Translates to: ERHQMVCYETHFGQKIAGGRSQR*SPCQSL
Trigger: CAGGGACTGACACGGGGATCATCTCTGTGACCGCCC...CCCAGCTATTTTCTGACCAAAATGTGTTTCATAACAAACCATCTGGTGCCTTTC
50% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR TCA 90 bp TGTCAGCAAAGAGAACAGCATGATTCTGACAGGGTTGGATTTTGTTTCACCCTCCTACCCCTCCACGCTTaGGGCCTGTTTCCTCATCTG +
Preference number: 4 (lower is better)
Translates to: CQQREQHDSDRVGFCFTLLPLHA*GLFPHL
Trigger: CAGATGAGGAAACAGGCCTCAAGCGTGGAGGGGTAG...GAGGGTGAAACAAAATCCAACCCTGTCAGAATCATGCTGTTCTCTTTGCTGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp GGCTACAGAGCAGGGGCAAGGAAGTTATCCTCATGTTCTGATAATGACCCTGCAGCTCTGGGCGATGTATaGAAACACCTTGTCGTGCAT +
Preference number: 4 (lower is better)
Translates to: GYRAGARKLSSCSDNDPAALGDV*KHLVVH
Trigger: ATGCACGACAAGGTGTTTGCATACATCGCCCAGAGC...TGCAGGGTCATTATCAGAACATGAGGATAACTTCCTTGCCCCTGCTCTGTAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp CAGGAAGTATGGGGAGGCGGGGCGCAGACACTCAAACGGACACACAGAAACCAGGTTAATGCTTTAAAGTaGCAAGCTGTATCGTCTTTG +
Preference number: 4 (lower is better)
Translates to: QEVWGGGAQTLKRTHRNQVNALK*QAVSSL
Trigger: CAAAGACGATACAGCTTGGCACTTTAAAGCATTAAC...CTGGTTTCTGTGTGTCCGTTTGAGTGTCTGCGCCCCGCCTCCCCATACTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp GCTTTAAAGTGCCAAGCTGTATCGTCTTTGGTCAGGAGCTGCCCCTTAGTCTCTCCTGCCAGTTCTGTGTaGAAAGGCACCAGATGGTTT +
Preference number: 4 (lower is better)
Translates to: ALKCQAVSSLVRSCPLVSPASSV*KGTRWF
Trigger: AAACCATCTGGTGCCTTTCCACACAGAACTGGCAGG...AGAGACTAAGGGGCAGCTCCTGACCAAAGACGATACAGCTTGGCACTTTAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp GAAAGGCACCAGATGGTTTGTTATGAAACACATTTTGGTCAGAAAATAGCTGGGTCCTCACCCTTGGGCTaGTCCACTAGCGTCATGCCC +
Preference number: 4 (lower is better)
Translates to: ERHQMVCYETHFGQKIAGSSPLG*STSVMP
Trigger: GGGCATGACGCTAGTGGAGCAGCCCAAGGGTGAGGA...CCCAGCTATTTTCTGACCAAAATGTGTTTCATAACAAACCATCTGGTGCCTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp GGAGGTGGCTACAGAGCAGGGGCAAGGAAGTTATCCTCATGTTCTGATAATGACGTCGTGCATCTTGTCTaGTGTGCAATAGGAGATCCT +
Preference number: 4 (lower is better)
Translates to: GGGYRAGARKLSSCSDNDVVHLV*CAIGDP
Trigger: AGGATCTCCTATTGCACAGCAGACAAGATGCACGAC...GTCATTATCAGAACATGAGGATAACTTCCTTGCCCCTGCTCTGTAGCCACCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp GGAGGTGGCTACAGAGCAGGGGCAAGGAAGTTATCCTCATGTTCTGATAATGACGCAAACACCTTGTCGTaGATCTTGTCTGCTGTGCAA +
Preference number: 4 (lower is better)
Translates to: GGGYRAGARKLSSCSDNDANTLS*ILSAVQ
Trigger: TTGCACAGCAGACAAGATGCACGACAAGGTGTTTGC...GTCATTATCAGAACATGAGGATAACTTCCTTGCCCCTGCTCTGTAGCCACCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp CAGGGTTGGATTTTGTTTCACCCTCGGAATGAGCAGACTTCAAACACTTGCATTGAGGGTAACAGCCTGTaGCATCTTCCGCTTGGTGCA +
Preference number: 4 (lower is better)
Translates to: QGWILFHPRNEQTSNTCIEGNSL*HLPLGA
Trigger: TGCACCAAGCGGAAGATGGCACAGGCTGTTACCCTC...AATGCAAGTGTTTGAAGTCTGCTCATTCCGAGGGTGAAACAAAATCCAACCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp GAAATCCAACAGCTTTCAGGAAGCAGGATGCCCCCAGGGAAATTTGGGTCCTTATCAGGATGGAAAAGATaGTGGAGGCTTTGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: EIQQLSGSRMPPGKFGSLSGWKR*WRLCWL
Trigger: AAGCCAGCAAAGCCTCCAGCATCTTTTCCATCCTGA...TAAGGACCCAAATTTCCCTGGGGGCATCCTGCTTCCTGAAAGCTGTTGGATTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp TGTCAGCAAAGAGAACAGCATGATTCTGACAGGGTTGGATTTTGTTTCACCCTCACAAATAGAGGCCGGTaGCAAGGAGGTGGCTACAGA +
Preference number: 4 (lower is better)
Translates to: CQQREQHDSDRVGFCFTLTNRGR*QGGGYR
Trigger: TCTGTAGCCACCTCCTTGGCACCGGCCTCTATTTGT...GAGGGTGAAACAAAATCCAACCCTGTCAGAATCATGCTGTTCTCTTTGCTGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp CTTCTGAGCATAAGCCAGAAGTCACTGAATAAATATTCAAGGCATCTTTTGGTTGCCACTCAAGGCTTGTaGCCGCGGCACCTCGTCCAT +
Preference number: 4 (lower is better)
Translates to: LLSISQKSLNKYSRHLLVATQGL*PRHLVH
Trigger: ATGGACGAGGTGCCGCGGCCACAAGCCTTGAGTGGC...AACCAAAAGATGCCTTGAATATTTATTCAGTGACTTCTGGCTTATGCTCAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp GCTTTAAAGTGCCAAGCTGTATCGTCTTTGGTCAGGAGCTGCCCCTTAGTCTCTAGAAGAAAGCAGCTTTaGCATCAGACCTGGGTTCTA +
Preference number: 4 (lower is better)
Translates to: ALKCQAVSSLVRSCPLVSRRKQL*HQTWVL
Trigger: TAGAACCCAGGTCTGATGCCAAAGCTGCTTTCTTCT...AGAGACTAAGGGGCAGCTCCTGACCAAAGACGATACAGCTTGGCACTTTAAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp GAAAGGCACCAGATGGTTTGTTATGAAACACATTTTGGTCAGAAAATAGCTGGGAGCCGATTACAGCACTaGACATGTCACGCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: ERHQMVCYETHFGQKIAGSRLQH*TCHAAG
Trigger: TCCTGCTGCGTGACATGTGCAGTGCTGTAATCGGCT...CCCAGCTATTTTCTGACCAAAATGTGTTTCATAACAAACCATCTGGTGCCTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp CTTCTGAGCATAAGCCAGAAGTCACTGAATAAATATTCAAGGCATCTTTTGGTTACGTCCCCTCCCTCTTaGCTGGCTTTGTCCCTCTTC +
Preference number: 4 (lower is better)
Translates to: LLSISQKSLNKYSRHLLVTSPPS*LALSLF
Trigger: GAAGAGGGACAAAGCCAGCCAAGAGGGAGGGGACGT...AACCAAAAGATGCCTTGAATATTTATTCAGTGACTTCTGGCTTATGCTCAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp CAGGGTTGGATTTTGTTTCACCCTCGGAATGAGCAGACTTCAAACACTTGCATTGGATGGAAAAGATGCTaGAGGCTTTGCTGGCTTTCA +
Preference number: 4 (lower is better)
Translates to: QGWILFHPRNEQTSNTCIGWKRC*RLCWLS
Trigger: TGAAAGCCAGCAAAGCCTCCAGCATCTTTTCCATCC...AATGCAAGTGTTTGAAGTCTGCTCATTCCGAGGGTGAAACAAAATCCAACCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp TGTGTGGAAAGGCACCAGATGGTTTGTTATGAAACACATTTTGGTCAGAAAATAGAAAGCTGGACTCAATaGAGCACCATGGAGGAGCCC +
Preference number: 4 (lower is better)
Translates to: CVERHQMVCYETHFGQKIESWTQ*STMEEP
Trigger: GGGCTCCTCCATGGTGCTGCATTGAGTCCAGCTTTC...TATTTTCTGACCAAAATGTGTTTCATAACAAACCATCTGGTGCCTTTCCACACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp CTTCTGAGCATAAGCCAGAAGTCACTGAATAAATATTCAAGGCATCTTTTGGTTAGGACACGAGGCTCCTaGCAGTTCTGTGTGGAAAGG +
Preference number: 4 (lower is better)
Translates to: LLSISQKSLNKYSRHLLVRTRGS*QFCVER
Trigger: CCTTTCCACACAGAACTGGCAGGAGCCTCGTGTCCT...AACCAAAAGATGCCTTGAATATTTATTCAGTGACTTCTGGCTTATGCTCAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp GTGGAAAGGCACCAGATGGTTTGTTATGAAACACATTTTGGTCAGAAAATAGCTGGGCAGAAGGAAAGCTaGACTCAATGCAGCACCATG +
Preference number: 4 (lower is better)
Translates to: VERHQMVCYETHFGQKIAGQKES*TQCSTM
Trigger: CATGGTGCTGCATTGAGTCCAGCTTTCCTTCTGCCC...AGCTATTTTCTGACCAAAATGTGTTTCATAACAAACCATCTGGTGCCTTTCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CCA 90 bp CAGGGTTGGATTTTGTTTCACCCTCGGAATGAGCAGACTTCAAACACTTGCATTATTCAAGGCATCTTTTaGTTCTCAGAGAAAGAGCAG +
Preference number: 4 (lower is better)
Translates to: QGWILFHPRNEQTSNTCIIQGIF*FSEKEQ
Trigger: CTGCTCTTTCTCTGAGAACCAAAAGATGCCTTGAAT...AATGCAAGTGTTTGAAGTCTGCTCATTCCGAGGGTGAAACAAAATCCAACCCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR TCA 90 bp TGTGTGGAAAGGCACCAGATGGTTTGTTATGAAACACATTTTGGTCAGAAAATAGTTTCACCCTCGGAATaGGCAGACTTCAAACACTTG +
Preference number: 4 (lower is better)
Translates to: CVERHQMVCYETHFGQKIVSPSE*ADFKHL
Trigger: CAAGTGTTTGAAGTCTGCTCATTCCGAGGGTGAAAC...TATTTTCTGACCAAAATGTGTTTCATAACAAACCATCTGGTGCCTTTCCACACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR GCA 90 bp TGTGTGGAAAGGCACCAGATGGTTTGTTATGAAACACATTTTGGTCAGAAAATACAGACTTCAAACACTTaGATTTTCACGGAAATCAAC +
Preference number: 4 (lower is better)
Translates to: CVERHQMVCYETHFGQKIQTSNT*IFTEIN
Trigger: GTTGATTTCCGTGAAAATGCAAGTGTTTGAAGTCTG...TATTTTCTGACCAAAATGTGTTTCATAACAAACCATCTGGTGCCTTTCCACACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS TCA 90 bp GCTTGGCCAAGCTGGGGCTCCGGATCAGCGCCCGCCCCGCCGACTTaGGCGCGTCCATGGCCCGCTCCGGCCGCCGCCGCCGCTGCCGCA +
Preference number: 5 (lower is better)
Translates to: AWPSWGSGSAPAPPT*ARPWPAPAAAAAAA
Trigger: TGCGGCAGCGGCGGCGGCGGCCGGAGCGGGCCATGGACGCGCTCAAGTCGGCGGGGCGGGCGCTGATCCGGAGCCCCAGCTTGGCCAAGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp GCAGGGGCCCGACGGAGGGCGGTCACAGAGATGATCCCCGTGTCAGTCCCTGGGGCTGCCACTCAAGGCTaGTGGCCGCGGCACCTCGTC +
Preference number: 5 (lower is better)
Translates to: AGARRRAVTEMIPVSVPGAATQG*WPRHLV
Trigger: GACGAGGTGCCGCGGCCACAAGCCTTGAGTGGCAGC...CCCAGGGACTGACACGGGGATCATCTCTGTGACCGCCCTCCGTCGGGCCCCTGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp AGCCTGGGGTCCAGGGCTCAAACCCCCGCCTGCTGGGCCCTGAGGAAGCAGAGCCCATCCACGGGGACCTaGGGCCCCTTCTCCTGGAGG +
Preference number: 5 (lower is better)
Translates to: SLGSRAQTPACWALRKQSPSTGT*GPFSWR
Trigger: CCTCCAGGAGAAGGGGCCCAAGGTCCCCGTGGATGG...GCTCTGCTTCCTCAGGGCCCAGCAGGCGGGGGTTTGAGCCCTGGACCCCAGGCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp AGCCTGGGGTCCAGGGCTCAAACCCCCGCCTGCTGGGCCCTGAGGAAGCAGAGCGTAGCCACGATCCTCTaGATGGCGGCGGCCGACAGC +
Preference number: 5 (lower is better)
Translates to: SLGSRAQTPACWALRKQSVATIL*MAAADS
Trigger: GCTGTCGGCCGCCGCCATCAAGAGGATCGTGGCTAC...GCTCTGCTTCCTCAGGGCCCAGCAGGCGGGGGTTTGAGCCCTGGACCCCAGGCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS CCA 90 bp TCAGGGTGGGCGCCTGGAGGCACGGCCTCAGGCAGGCCTCCTGCCTaGGTGCATCGCCAGCATCTCAGCCCAAGGACCCAAAGCTGGAGA +
Preference number: 5 (lower is better)
Translates to: SGWAPGGTASGRPPA*VHRQHLSPRTQSWR
Trigger: TCTCCAGCTTTGGGTCCTTGGGCTGAGATGCTGGCGATGCACCCAGGCAGGAGGCCTGCCTGAGGCCGTGCCTCCAGGCGCCCACCCTGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS TCA 90 bp GTGTCAGGGCCGCTTGTGTCCGGCTGGCCCCGGGCCCTCAGAAGCTaGAGAGGTCATCCTGCTCTGTGCCGCTGCTGTCAGGCTTGTCCC +
Preference number: 5 (lower is better)
Translates to: VSGPLVSGWPRALRS*RGHPALCRCCQACP
Trigger: GGGACAAGCCTGACAGCAGCGGCACAGAGCAGGATGACCTCTTCAGCTTCTGAGGGCCCGGGGCCAGCCGGACACAAGCGGCCCTGACAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000374338.5
ENST00000470950.1
ENST00000474283.1
ENST00000488127.1
CDS GCA 90 bp TGTGTCCGGCTGGCCCCGGGCCCTCAGAAGCTGAAGAGGTCATCCTaGTCTGTGCCGCTGCTGTCAGGCTTGTCCCAGTCGACAGGCGAG +
Preference number: 5 (lower is better)
Translates to: CVRLAPGPQKLKRSS*SVPLLSGLSQSTGE
Trigger: CTCGCCTGTCGACTGGGACAAGCCTGACAGCAGCGGCACAGAGCAGGATGACCTCTTCAGCTTCTGAGGGCCCGGGGCCAGCCGGACACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000374338.5
ENST00000470950.1
ENST00000474283.1
ENST00000488127.1
CDS-3UTR CAA 90 bp AGCGGGAGCCGATTACAGCACTGCACATGTCACGCAGCAGGAGACGTGCCTGACCAGTTCTCAGGCAGCTaGCGGTGCCGGCCACCGCCC +
Preference number: 5 (lower is better)
Translates to: SGSRLQHCTCHAAGDVPDQFSGS*RCRPPP
Trigger: GGGCGGTGGCCGGCACCGCAAGCTGCCTGAGAACTG...GTCAGGCACGTCTCCTGCTGCGTGACATGTGCAGTGCTGTAATCGGCTCCCGCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS GCA 90 bp TCCTCATTCAGGCGGCTGAGGGGGAGGGGTGGTAGGAGCGAGCTCTaGCACACCAAGAACAAGGGCGCCTTTGGCTGGTCTTGTGGTGGG +
Preference number: 5 (lower is better)
Translates to: SSFRRLRGRGGRSEL*HTKNKGAFGWSCGG
Trigger: CCCACCACAAGACCAGCCAAAGGCGCCCTTGTTCTTGGTGTGGCAGAGCTCGCTCCTACCACCCCTCCCCCTCAGCCGCCTGAATGAGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS-3UTR CAA 90 bp AAGCACAGGTGGAGACCATCCACGGGGACCTTGGGCCCCTTCTCCTGGAGGAAGGACAGCTCCTCACCCTaGGGCTGCTCCACTAGCGTC +
Preference number: 5 (lower is better)
Translates to: KHRWRPSTGTLGPFSWRKDSSSP*GCSTSV
Trigger: GACGCTAGTGGAGCAGCCCAAGGGTGAGGAGCTGTC...CTTCCTCCAGGAGAAGGGGCCCAAGGTCCCCGTGGATGGTCTCCACCTGTGCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS GCA 90 bp TCCCAGGGTGTCTGGAGACCCAGGTGGGTTCAGTGCCCTGGTCCATaGTACCTGCCCGTGAGACCTTGGGCAAGTCACTGCTCCACGTTG +
Preference number: 5 (lower is better)
Translates to: SQGVWRPRWVQCPGP*YLPVRPWASHCSTL
Trigger: CAACGTGGAGCAGTGACTTGCCCAAGGTCTCACGGGCAGGTAGCATGGACCAGGGCACTGAACCCACCTGGGTCTCCAGACACCCTGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CCA 90 bp TGGGAGAGGAGAAAGGCCATGTCCCAGGGTGTCTGGAGACCCAGGTaGGTTCAGTGCCCTGGTCCATGCTACCTGCCCGTGAGACCTTGG +
Preference number: 5 (lower is better)
Translates to: WERRKAMSQGVWRPR*VQCPGPCYLPVRPW
Trigger: CCAAGGTCTCACGGGCAGGTAGCATGGACCAGGGCACTGAACCCACCTGGGTCTCCAGACACCCTGGGACATGGCCTTTCTCCTCTCCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS-3UTR CAA 90 bp AGCCTGGGGTCCAGGGCTCAAACCCCCGCCTGCTGGGCCCTGAGGAAGCAGAGCTTCTCAATGAGCTGGTaGGTGAGGTTGTCTGTCAGG +
Preference number: 5 (lower is better)
Translates to: SLGSRAQTPACWALRKQSFSMSW*VRLSVR
Trigger: CCTGACAGACAACCTCACCAACCAGCTCATTGAGAA...GCTCTGCTTCCTCAGGGCCCAGCAGGCGGGGGTTTGAGCCCTGGACCCCAGGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp GTCAGGCCTCGCCCACGCCGCCTTATGACAAATAGAGGCCGGTGCCAAGGAGGTGACGTCCCCTCCCTCTaGGCTGGCTTTGTCCCTCTT +
Preference number: 5 (lower is better)
Translates to: VRPRPRRLMTNRGRCQGGDVPSL*AGFVPL
Trigger: AAGAGGGACAAAGCCAGCCAAGAGGGAGGGGACGTC...ACCTCCTTGGCACCGGCCTCTATTTGTCATAAGGCGGCGTGGGCGAGGCCTGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS GCA 90 bp TCACCGATCTGCTGGCCACACAACCACTCACCCAGACAACACTGCTaGCACTCAAGGCTTGTGGCCGCGGCACCTCGTCCATGTTGGTGG +
Preference number: 5 (lower is better)
Translates to: SPICWPHNHSPRQHC*HSRLVAAAPRPCWW
Trigger: CCACCAACATGGACGAGGTGCCGCGGCCACAAGCCTTGAGTGGCAGCAGTGTTGTCTGGGTGAGTGGTTGTGTGGCCAGCAGATCGGTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS GCA 90 bp GGATCACCGATCTGCTGGCCACACAACCACTCACCCAGACAACACTaGTGCCACTCAAGGCTTGTGGCCGCGGCACCTCGTCCATGTTGG +
Preference number: 5 (lower is better)
Translates to: GSPICWPHNHSPRQH*CHSRLVAAAPRPCW
Trigger: CCAACATGGACGAGGTGCCGCGGCCACAAGCCTTGAGTGGCAGCAGTGTTGTCTGGGTGAGTGGTTGTGTGGCCAGCAGATCGGTGATCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS GCA 90 bp AGAAAGGCCATGTCCCAGGGTGTCTGGAGACCCAGGTGGGTTCAGTaGCCTGGTCCATGCTACCTGCCCGTGAGACCTTGGGCAAGTCAC +
Preference number: 5 (lower is better)
Translates to: RKAMSQGVWRPRWVQ*PGPCYLPVRPWASH
Trigger: GTGACTTGCCCAAGGTCTCACGGGCAGGTAGCATGGACCAGGGCACTGAACCCACCTGGGTCTCCAGACACCCTGGGACATGGCCTTTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CCA 90 bp CAGTTCTCAGGCAGCTCTGCCATTCATGTCTGCTTCCCCAGGACCTaGCATGGAAGCGTGCGCCTGCCCAATGTGGCCGTCCAGTCTGGT +
Preference number: 5 (lower is better)
Translates to: QFSGSSAIHVCFPRT*HGSVRLPNVAVQSG
Trigger: ACCAGACTGGACGGCCACATTGGGCAGGCGCACGCTTCCATGCCAGGTCCTGGGGAAGCAGACATGAATGGCAGAGCTGCCTGAGAACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000485476.2
CDS CCA 90 bp AGGTCCCTCCATGGCCTTCTGGTGAGGATGGGCAAGTGGCAAGGGTaGTTCCCAAACAGCAGAGAACAGGCTCGAGGGACACCAGGGGAG +
Preference number: 5 (lower is better)
Translates to: RSLHGLLVRMGKWQG*FPNSREQARGTPGE
Trigger: CTCCCCTGGTGTCCCTCGAGCCTGTTCTCTGCTGTTTGGGAACCACCCTTGCCACTTGCCCATCCTCACCAGAAGGCCATGGAGGGACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS-3UTR CAA 90 bp CTGAAATCCAACAGCTTTCAGGAAGCAGGATGCCCCCAGGGAAATTTGGGTCCTGGAGGGGGTGCAGTCTaGGCGGGCCCCCAGGACGTC +
Preference number: 5 (lower is better)
Translates to: LKSNSFQEAGCPQGNLGPGGGAV*AGPQDV
Trigger: GACGTCCTGGGGGCCCGCCAAGACTGCACCCCCTCC...AGGACCCAAATTTCCCTGGGGGCATCCTGCTTCCTGAAAGCTGTTGGATTTCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp GGCAGAGCTTGCTCCAGGAGAGCAAGCGGGAGCCGATTACAGCACTGCACATGTGGCACCTCGTCCATGTaGGTGGTGTTGGCGCTGACC +
Preference number: 5 (lower is better)
Translates to: GRACSRRASGSRLQHCTCGTSSM*VVLALT
Trigger: GGTCAGCGCCAACACCACCAACATGGACGAGGTGCC...ACATGTGCAGTGCTGTAATCGGCTCCCGCTTGCTCTCCTGGAGCAAGCTCTGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS CCA 90 bp AGCCTCAGGTTCAAAAGGGACATTGTTCATCCCCTATCCTGCGCCTaGGCACTACCGGGCTGGGTCTGGTCCTCCCAGAGGCCCACAAGT +
Preference number: 5 (lower is better)
Translates to: SLRFKRDIVHPLSCA*ALPGWVWSSQRPTS
Trigger: ACTTGTGGGCCTCTGGGAGGACCAGACCCAGCCCGGTAGTGCCCAGGCGCAGGATAGGGGATGAACAATGTCCCTTTTGAACCTGAGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CCA 90 bp CGACAGGTGAGGTCCCTCCATGGCCTTCTGGTGAGGATGGGCAAGTaGCAAGGGTGGTTCCCAAACAGCAGAGAACAGGCTCGAGGGACA +
Preference number: 5 (lower is better)
Translates to: RQVRSLHGLLVRMGK*QGWFPNSREQARGT
Trigger: TGTCCCTCGAGCCTGTTCTCTGCTGTTTGGGAACCACCCTTGCCACTTGCCCATCCTCACCAGAAGGCCATGGAGGGACCTCACCTGTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS-3UTR CAA 90 bp GGAGGTGGCTACAGAGCAGGGGCAAGGAAGTTATCCTCATGTTCTGATAATGACACGTGTCAGGGCCGCTaGTGTCCGGCTGGCCCCGGG +
Preference number: 5 (lower is better)
Translates to: GGGYRAGARKLSSCSDNDTCQGR*CPAGPG
Trigger: CCCGGGGCCAGCCGGACACAAGCGGCCCTGACACGT...GTCATTATCAGAACATGAGGATAACTTCCTTGCCCCTGCTCTGTAGCCACCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp AAGTATGGGGAGGCGGGGCGCAGACACTCAAACGGACACACAGAAACCAGAGGACCGCAGCAGGTGGCTTaGGTCCATCACGTGTCAGGG +
Preference number: 5 (lower is better)
Translates to: KYGEAGRRHSNGHTETRGPQQVA*VHHVSG
Trigger: CCCTGACACGTGATGGACCAAAGCCACCTGCTGCGG...TCCTCTGGTTTCTGTGTGTCCGTTTGAGTGTCTGCGCCCCGCCTCCCCATACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp TGTCAGTCCCTGGGAGCAGGGAGCAGCCAGTTACACTGGTTCCAAGCACAGGTGAGGAAGAGCACAGCCTaGCGTGGAGGGGAGAAGGCA +
Preference number: 5 (lower is better)
Translates to: CQSLGAGSSQLHWFQAQVRKSTA*RGGEKA
Trigger: TGCCTTCTCCCCTCCACGCAAGGCTGTGCTCTTCCT...CACCTGTGCTTGGAACCAGTGTAACTGGCTGCTCCCTGCTCCCAGGGACTGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS CCA 90 bp GAGTCCCACAGCCTCAGCAGAAAAGCGACAGGTGAGGTCCCTCCATaGCCTTCTGGTGAGGATGGGCAAGTGGCAAGGGTGGTTCCCAAA +
Preference number: 5 (lower is better)
Translates to: ESHSLSRKATGEVPP*PSGEDGQVARVVPK
Trigger: TTTGGGAACCACCCTTGCCACTTGCCCATCCTCACCAGAAGGCCATGGAGGGACCTCACCTGTCGCTTTTCTGCTGAGGCTGTGGGACTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000470950.1
ENST00000488127.1
CDS CCA 90 bp GACGCTCAGGCCAAGAGGCCAAGCATTGTGAGGAGACAGCTGTGCTaGGAGCCAAGCCTGTTGGGGATGCAGCCTCAGGTTCAAAAGGGA +
Preference number: 5 (lower is better)
Translates to: DAQAKRPSIVRRQLC*EPSLLGMQPQVQKG
Trigger: TCCCTTTTGAACCTGAGGCTGCATCCCCAACAGGCTTGGCTCCCAGCACAGCTGTCTCCTCACAATGCTTGGCCTCTTGGCCTGAGCGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS-3UTR CAA 90 bp AGGATGGAAAAGATGCTGGAGGCTTTGCTGGCTTTCAGGATGCCGGGAGCCCCATGTGCCATCTTCCGCTaGGTGCAGAGGAAGGCGTGG +
Preference number: 5 (lower is better)
Translates to: RMEKMLEALLAFRMPGAPCAIFR*VQRKAW
Trigger: CCACGCCTTCCTCTGCACCAAGCGGAAGATGGCACA...TGGGGCTCCCGGCATCCTGAAAGCCAGCAAAGCCTCCAGCATCTTTTCCATCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp AGGATGGAAAAGATGCTGGAGGCTTTGCTGGCTTTCAGGATGCCGGGAGCCCCATCCATGTTGGTGGTGTaGGCGCTGACCGTGGACAGC +
Preference number: 5 (lower is better)
Translates to: RMEKMLEALLAFRMPGAPSMLVV*ALTVDS
Trigger: GCTGTCCACGGTCAGCGCCAACACCACCAACATGGA...TGGGGCTCCCGGCATCCTGAAAGCCAGCAAAGCCTCCAGCATCTTTTCCATCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS GCA 90 bp TTCCGCTTGGTGCAGAGGAAGGCGTGGCACTCGAGGCTCTGGTTGTaGTGGCTCTGGGCGATGTATGCAAACACCTTGTCGTGCATCTTG +
Preference number: 5 (lower is better)
Translates to: FRLVQRKAWHSRLWL*WLWAMYANTLSCIL
Trigger: CAAGATGCACGACAAGGTGTTTGCATACATCGCCCAGAGCCAGCACAACCAGAGCCTCGAGTGCCACGCCTTCCTCTGCACCAAGCGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000374338.5
ENST00000462394.1
ENST00000488127.1
CDS GCA 90 bp ACCCTTACTGAGATGAAAAAGCTGAGACAGAGAGGTCAGGGGGCTTaGCCTGAGTCCCTGAGGGAGTCAGGGACCAAGCTGGTGACTGCC +
Preference number: 5 (lower is better)
Translates to: TLTEMKKLRQRGQGA*PESLRESGTKLVTA
Trigger: GGCAGTCACCAGCTTGGTCCCTGACTCCCTCAGGGACTCAGGGCAAGCCCCCTGACCTCTCTGTCTCAGCTTTTTCATCTCAGTAAGGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CCA 90 bp CGCTTGGTGCAGAGGAAGGCGTGGCACTCGAGGCTCTGGTTGTGCTaGCTCTGGGCGATGTATGCAAACACCTTGTCGTGCATCTTGTCT +
Preference number: 5 (lower is better)
Translates to: RLVQRKAWHSRLWLC*LWAMYANTLSCILS
Trigger: AGACAAGATGCACGACAAGGTGTTTGCATACATCGCCCAGAGCCAGCACAACCAGAGCCTCGAGTGCCACGCCTTCCTCTGCACCAAGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000374338.5
ENST00000462394.1
ENST00000488127.1
CDS-3UTR CAA 90 bp GAAAAGATGCTGGAGGCTTTGCTGGCTTTCAGGATGCCGGGAGCCCCACGGGGGAGCTGGTTGGTGAGGTaGTCTGTCAGGATAATTCCC +
Preference number: 5 (lower is better)
Translates to: EKMLEALLAFRMPGAPRGSWLVR*SVRIIP
Trigger: GGGAATTATCCTGACAGACAACCTCACCAACCAGCT...CCCCCGTGGGGCTCCCGGCATCCTGAAAGCCAGCAAAGCCTCCAGCATCTTTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp TGTCAGTCCCTGGGAGCAGGGAGCAGCCAGTTACACTGGTTCCAAGCACAGGTGAAAAGGAGGTGTGAGTaGCGTGAGGAGGAGGCAGAG +
Preference number: 5 (lower is better)
Translates to: CQSLGAGSSQLHWFQAQVKRRCE*REEEAE
Trigger: CTCTGCCTCCTCCTCACGCAACTCACACCTCCTTTT...CACCTGTGCTTGGAACCAGTGTAACTGGCTGCTCCCTGCTCCCAGGGACTGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS CCA 90 bp CTTTGTCCCTCTTCTCTTTCTCTGCAGGACCAAGGCACAACATGTTaGAGCCTCAGACCCCAGCACTCTGTCCCCAGCAATCACCGGGCA +
Preference number: 5 (lower is better)
Translates to: LCPSSLSLQDQGTTC*SLRPQHSVPSNHRA
Trigger: TGCCCGGTGATTGCTGGGGACAGAGTGCTGGGGTCTGAGGCTCCAACATGTTGTGCCTTGGTCCTGCAGAGAAAGAGAAGAGGGACAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000484476.5
CDS CCA 90 bp AAGCAGGAGATAAGAACTATGTTTGGGGGAGCCCATGCTCACAGCTaGGGCTTGTCCCAGCCCTGGGTAAGCTACAGGGACTCAGGACAC +
Preference number: 5 (lower is better)
Translates to: KQEIRTMFGGAHAHS*GLSQPWVSYRDSGH
Trigger: GTGTCCTGAGTCCCTGTAGCTTACCCAGGGCTGGGACAAGCCCCAGCTGTGAGCATGGGCTCCCCCAAACATAGTTCTTATCTCCTGCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS-3UTR CAA 90 bp GAAATCCAACAGCTTTCAGGAAGCAGGATGCCCCCAGGGAAATTTGGGTCCTTACCGCTGCTGTCAGGCTaGTCCCAGTCGACAGGCGAG +
Preference number: 5 (lower is better)
Translates to: EIQQLSGSRMPPGKFGSLPLLSG*SQSTGE
Trigger: CTCGCCTGTCGACTGGGACAAGCCTGACAGCAGCGG...TAAGGACCCAAATTTCCCTGGGGGCATCCTGCTTCCTGAAAGCTGTTGGATTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp GCTTTAAAGTGCCAAGCTGTATCGTCTTTGGTCAGGAGCTGCCCCTTAGTCTCTCCAGGACCTGAGGGTTaGTCCGAGACTGGGCAAGCC +
Preference number: 5 (lower is better)
Translates to: ALKCQAVSSLVRSCPLVSPGPEG*SETGQA
Trigger: GGCTTGCCCAGTCTCGGACAAACCCTCAGGTCCTGG...AGAGACTAAGGGGCAGCTCCTGACCAAAGACGATACAGCTTGGCACTTTAAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS GCA 90 bp TGCCCTGGTCCATGCTACCTGCCCGTGAGACCTTGGGCAAGTCACTaGTCCACGTTGAAACTCAGCTTTTCCTTCAATAAGAGGAGGGCA +
Preference number: 5 (lower is better)
Translates to: CPGPCYLPVRPWASH*STLKLSFSFNKRRA
Trigger: TGCCCTCCTCTTATTGAAGGAAAAGCTGAGTTTCAACGTGGAGCAGTGACTTGCCCAAGGTCTCACGGGCAGGTAGCATGGACCAGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CCA 90 bp CTCAATGAGCTGGTTGGTGAGGTTGTCTGTCAGGATAATTCCCCGTaGCGACACCTTCAGAGTCACCTTCTGCAGCTTCTTCCCACTGGC +
Preference number: 5 (lower is better)
Translates to: LNELVGEVVCQDNSP*RHLQSHLLQLLPTG
Trigger: GCCAGTGGGAAGAAGCTGCAGAAGGTGACTCTGAAGGTGTCGCCACGGGGAATTATCCTGACAGACAACCTCACCAACCAGCTCATTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374338.5
ENST00000488127.1
CDS CCA 90 bp AGGTGGGTTCAGTGCCCTGGTCCATGCTACCTGCCCGTGAGACCTTaGGCAAGTCACTGCTCCACGTTGAAACTCAGCTTTTCCTTCAAT +
Preference number: 5 (lower is better)
Translates to: RWVQCPGPCYLPVRP*ASHCSTLKLSFSFN
Trigger: ATTGAAGGAAAAGCTGAGTTTCAACGTGGAGCAGTGACTTGCCCAAGGTCTCACGGGCAGGTAGCATGGACCAGGGCACTGAACCCACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS-3UTR CAA 90 bp CAGGAAGTATGGGGAGGCGGGGCGCAGACACTCAAACGGACACACAGAAACCAGTATTCAAGGCATCTTTaGGTTCTCAGAGAAAGAGCA +
Preference number: 5 (lower is better)
Translates to: QEVWGGGAQTLKRTHRNQYSRHL*VLRERA
Trigger: TGCTCTTTCTCTGAGAACCAAAAGATGCCTTGAATA...CTGGTTTCTGTGTGTCCGTTTGAGTGTCTGCGCCCCGCCTCCCCATACTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp CCAAATAAATCTAGGTGTCAGGTTTCACACATCATCCCAGGAAGTATGGGGAGGAAGATGCTGGAGGCTTaGCTGGCTTTCAGGATGCCG +
Preference number: 5 (lower is better)
Translates to: PNKSRCQVSHIIPGSMGRKMLEA*LAFRMP
Trigger: CGGCATCCTGAAAGCCAGCAAAGCCTCCAGCATCTT...CCTCCCCATACTTCCTGGGATGATGTGTGAAACCTGACACCTAGATTTATTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp GCTTTAAAGTGCCAAGCTGTATCGTCTTTGGTCAGGAGCTGCCCCTTAGTCTCTAAAGCACAGCAAGACTaGTCTGCAGACACACAGGAG +
Preference number: 5 (lower is better)
Translates to: ALKCQAVSSLVRSCPLVSKAQQD*SADTQE
Trigger: CTCCTGTGTGTCTGCAGACAAGTCTTGCTGTGCTTT...AGAGACTAAGGGGCAGCTCCTGACCAAAGACGATACAGCTTGGCACTTTAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp GGAGGTGGCTACAGAGCAGGGGCAAGGAAGTTATCCTCATGTTCTGATAATGACATGTATGCAAACACCTaGTCGTGCATCTTGTCTGCT +
Preference number: 5 (lower is better)
Translates to: GGGYRAGARKLSSCSDNDMYANT*SCILSA
Trigger: AGCAGACAAGATGCACGACAAGGTGTTTGCATACAT...GTCATTATCAGAACATGAGGATAACTTCCTTGCCCCTGCTCTGTAGCCACCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp GAAAGGCACCAGATGGTTTGTTATGAAACACATTTTGGTCAGAAAATAGCTGGGAACTCAAAGGCGACTTaGAAGGCCTGGGCTACGGTG +
Preference number: 5 (lower is better)
Translates to: ERHQMVCYETHFGQKIAGNSKAT*KAWATV
Trigger: CACCGTAGCCCAGGCCTTCAAAGTCGCCTTTGAGTT...CCCAGCTATTTTCTGACCAAAATGTGTTTCATAACAAACCATCTGGTGCCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp TGTGTGGAAAGGCACCAGATGGTTTGTTATGAAACACATTTTGGTCAGAAAATAGTCATGCCCAGGTACTaGAGGCTGAACAGCATCCCC +
Preference number: 5 (lower is better)
Translates to: CVERHQMVCYETHFGQKIVMPRY*RLNSIP
Trigger: GGGGATGCTGTTCAGCCTCAAGTACCTGGGCATGAC...TATTTTCTGACCAAAATGTGTTTCATAACAAACCATCTGGTGCCTTTCCACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp TGTGTGGAAAGGCACCAGATGGTTTGTTATGAAACACATTTTGGTCAGAAAATAGAGAAGAAAGCAGCTTaGGCATCAGACCTGGGTTCT +
Preference number: 5 (lower is better)
Translates to: CVERHQMVCYETHFGQKIEKKAA*ASDLGS
Trigger: AGAACCCAGGTCTGATGCCAAAGCTGCTTTCTTCTC...TATTTTCTGACCAAAATGTGTTTCATAACAAACCATCTGGTGCCTTTCCACACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS-3UTR CAA 90 bp CTTCTGAGCATAAGCCAGAAGTCACTGAATAAATATTCAAGGCATCTTTTGGTTGCAGACTTCAAACACTaGCATTTTCACGGAAATCAA +
Preference number: 5 (lower is better)
Translates to: LLSISQKSLNKYSRHLLVADFKH*HFHGNQ
Trigger: TTGATTTCCGTGAAAATGCAAGTGTTTGAAGTCTGC...AACCAAAAGATGCCTTGAATATTTATTCAGTGACTTCTGGCTTATGCTCAGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS CAA 90 bp TGCTTGGCCAAGCTGGGGCTCCGGATCAGCGCCCGCCCCGCCGACTaGAGCGCGTCCATGGCCCGCTCCGGCCGCCGCCGCCGCTGCCGC +
Preference number: 6 (lower is better)
Translates to: CLAKLGLRISARPAD*SASMARSGRRRRCR
Trigger: GCGGCAGCGGCGGCGGCGGCCGGAGCGGGCCATGGACGCGCTCAAGTCGGCGGGGCGGGCGCTGATCCGGAGCCCCAGCTTGGCCAAGCA
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000374338.5
CDS CAA 72 bp CCACTCAAGGCTTGTGGCCGCGGCACCTCGTCCATGTaGGTGGTGTTGGCGCTGACCGTGGACAGCGGGGCC +
Preference number: 6 (lower is better)
Translates to: PLKACGRGTSSM*VVLALTVDSGA
Trigger: GGCCCCGCTGTCCACGGTCAGCGCCAACACCACCAACATGGACGAGGTGCCGCGGCCACAAGCCTTGAGTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000374338.5
ENST00000474283.1
ENST00000484476.5
ENST00000488127.1
CDS CAA 90 bp CTCCCCCGCAGCAGGTGGCTTTGGTCCATCACGTGTCAGGGCCGCTaGTGTCCGGCTGGCCCCGGGCCCTCAGAAGCTGAAGAGGTCATC +
Preference number: 6 (lower is better)
Translates to: LPRSRWLWSITCQGR*CPAGPGPSEAEEVI
Trigger: GATGACCTCTTCAGCTTCTGAGGGCCCGGGGCCAGCCGGACACAAGCGGCCCTGACACGTGATGGACCAAAGCCACCTGCTGCGGGGGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000374338.5
ENST00000470950.1
ENST00000474283.1
ENST00000488127.1
CDS GCA 72 bp CTGGAGGCACGGCCTCAGGCAGGCCTCCTGCCTGGGTaGATCGCCAGCATCTCAGCCCAAGGACCCAAAGCT +
Preference number: 6 (lower is better)
Translates to: LEARPQAGLLPG*IASISAQGPKA
Trigger: AGCTTTGGGTCCTTGGGCTGAGATGCTGGCGATGCACCCAGGCAGGAGGCCTGCCTGAGGCCGTGCCTCCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CCA 72 bp GTTCATCCCCTATCCTGCGCCTGGGCACTACCGGGCTaGGTCTGGTCCTCCCAGAGGCCCACAAGTCACGGG +
Preference number: 6 (lower is better)
Translates to: VHPLSCAWALPG*VWSSQRPTSHG
Trigger: CCCGTGACTTGTGGGCCTCTGGGAGGACCAGACCCAGCCCGGTAGTGCCCAGGCGCAGGATAGGGGATGAAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CAA 72 bp GCTTGTGGCCGCGGCACCTCGTCCATGTTGGTGGTGTaGGCGCTGACCGTGGACAGCGGGGCCTTAGCTGTC +
Preference number: 6 (lower is better)
Translates to: ACGRGTSSMLVV*ALTVDSGALAV
Trigger: GACAGCTAAGGCCCCGCTGTCCACGGTCAGCGCCAACACCACCAACATGGACGAGGTGCCGCGGCCACAAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000374338.5
ENST00000474283.1
ENST00000484476.5
ENST00000488127.1
CDS CAA 72 bp AGCAGGTGGCTTTGGTCCATCACGTGTCAGGGCCGCTaGTGTCCGGCTGGCCCCGGGCCCTCAGAAGCTGAA +
Preference number: 6 (lower is better)
Translates to: SRWLWSITCQGR*CPAGPGPSEAE
Trigger: TTCAGCTTCTGAGGGCCCGGGGCCAGCCGGACACAAGCGGCCCTGACACGTGATGGACCAAAGCCACCTGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000374338.5
ENST00000470950.1
ENST00000474283.1
ENST00000488127.1
CDS CAA 90 bp ACACTGCTGCCACTCAAGGCTTGTGGCCGCGGCACCTCGTCCATGTaGGTGGTGTTGGCGCTGACCGTGGACAGCGGGGCCTTAGCTGTC +
Preference number: 6 (lower is better)
Translates to: TLLPLKACGRGTSSM*VVLALTVDSGALAV
Trigger: GACAGCTAAGGCCCCGCTGTCCACGGTCAGCGCCAACACCACCAACATGGACGAGGTGCCGCGGCCACAAGCCTTGAGTGGCAGCAGTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000374338.5
ENST00000474283.1
ENST00000484476.5
ENST00000488127.1
CDS GCA 72 bp TTGATGGCGGCGGCCGACAGCTCCTCACCCTTGGGCTaGTCCACTAGCGTCATGCCCAGGTACTTGAGGCTG +
Preference number: 6 (lower is better)
Translates to: LMAAADSSSPLG*STSVMPRYLRL
Trigger: CAGCCTCAAGTACCTGGGCATGACGCTAGTGGAGCAGCCCAAGGGTGAGGAGCTGTCGGCCGCCGCCATCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000374338.5
ENST00000485476.2
ENST00000488127.1
CDS CCA 72 bp GGCAGCTCTGCCATTCATGTCTGCTTCCCCAGGACCTaGCATGGAAGCGTGCGCCTGCCCAATGTGGCCGTC +
Preference number: 6 (lower is better)
Translates to: GSSAIHVCFPRT*HGSVRLPNVAV
Trigger: GACGGCCACATTGGGCAGGCGCACGCTTCCATGCCAGGTCCTGGGGAAGCAGACATGAATGGCAGAGCTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000485476.2
CDS CCA 72 bp GAGCTCTGCCACACCAAGAACAAGGGCGCCTTTGGCTaGTCTTGTGGTGGGCAGAGCCGTGGACGCTCAGGC +
Preference number: 6 (lower is better)
Translates to: ELCHTKNKGAFG*SCGGQSRGRSG
Trigger: GCCTGAGCGTCCACGGCTCTGCCCACCACAAGACCAGCCAAAGGCGCCCTTGTTCTTGGTGTGGCAGAGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CCA 72 bp GAGCGAGCTCTGCCACACCAAGAACAAGGGCGCCTTTaGCTGGTCTTGTGGTGGGCAGAGCCGTGGACGCTC +
Preference number: 6 (lower is better)
Translates to: ERALPHQEQGRL*LVLWWAEPWTL
Trigger: GAGCGTCCACGGCTCTGCCCACCACAAGACCAGCCAAAGGCGCCCTTGTTCTTGGTGTGGCAGAGCTCGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CCA 72 bp CCAGGGTGTCTGGAGACCCAGGTGGGTTCAGTGCCCTaGTCCATGCTACCTGCCCGTGAGACCTTGGGCAAG +
Preference number: 6 (lower is better)
Translates to: PGCLETQVGSVP*SMLPARETLGK
Trigger: CTTGCCCAAGGTCTCACGGGCAGGTAGCATGGACCAGGGCACTGAACCCACCTGGGTCTCCAGACACCCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CAA 72 bp GGAGCGAGCTCTGCCACACCAAGAACAAGGGCGCCTTaGGCTGGTCTTGTGGTGGGCAGAGCCGTGGACGCT +
Preference number: 6 (lower is better)
Translates to: GASSATPRTRAP*AGLVVGRAVDA
Trigger: AGCGTCCACGGCTCTGCCCACCACAAGACCAGCCAAAGGCGCCCTTGTTCTTGGTGTGGCAGAGCTCGCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CAA 90 bp CCACTCAAGGCTTGTGGCCGCGGCACCTCGTCCATGTTGGTGGTGTaGGCGCTGACCGTGGACAGCGGGGCCTTAGCTGTCTCCTCTAAG +
Preference number: 6 (lower is better)
Translates to: PLKACGRGTSSMLVV*ALTVDSGALAVSSK
Trigger: CTTAGAGGAGACAGCTAAGGCCCCGCTGTCCACGGTCAGCGCCAACACCACCAACATGGACGAGGTGCCGCGGCCACAAGCCTTGAGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000374338.5
ENST00000474283.1
ENST00000484476.5
ENST00000488127.1
CDS CAA 90 bp GGCCACACAACCACTCACCCAGACAACACTGCTGCCACTCAAGGCTaGTGGCCGCGGCACCTCGTCCATGTTGGTGGTGTTGGCGCTGAC +
Preference number: 6 (lower is better)
Translates to: GHTTTHPDNTAATQG*WPRHLVHVGGVGAD
Trigger: GTCAGCGCCAACACCACCAACATGGACGAGGTGCCGCGGCCACAAGCCTTGAGTGGCAGCAGTGTTGTCTGGGTGAGTGGTTGTGTGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS GCA 72 bp CATCCAGGCCATCATCCAGCTCCCAGACAACACTGCTaGCACTCAAGGCTTGTGGCCGCGGCACCTCGTCCA +
Preference number: 6 (lower is better)
Translates to: HPGHHPAPRQHC*HSRLVAAAPRP
Trigger: TGGACGAGGTGCCGCGGCCACAAGCCTTGAGTGGCAGCAGTGTTGTCTGGGAGCTGGATGATGGCCTGGATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000374338.5
ENST00000484476.5
CDS GCA 72 bp TGCTGGCCACACAACCACTCACCCAGACAACACTGCTaGCACTCAAGGCTTGTGGCCGCGGCACCTCGTCCA +
Preference number: 6 (lower is better)
Translates to: CWPHNHSPRQHC*HSRLVAAAPRP
Trigger: TGGACGAGGTGCCGCGGCCACAAGCCTTGAGTGGCAGCAGTGTTGTCTGGGTGAGTGGTTGTGTGGCCAGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS GCA 72 bp GTCTGGAGACCCAGGTGGGTTCAGTGCCCTGGTCCATaGTACCTGCCCGTGAGACCTTGGGCAAGTCACTGC +
Preference number: 6 (lower is better)
Translates to: VWRPRWVQCPGP*YLPVRPWASHC
Trigger: GCAGTGACTTGCCCAAGGTCTCACGGGCAGGTAGCATGGACCAGGGCACTGAACCCACCTGGGTCTCCAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS GCA 72 bp ATGTCCCAGGGTGTCTGGAGACCCAGGTGGGTTCAGTaGCCTGGTCCATGCTACCTGCCCGTGAGACCTTGG +
Preference number: 6 (lower is better)
Translates to: MSQGVWRPRWVQ*PGPCYLPVRPW
Trigger: CCAAGGTCTCACGGGCAGGTAGCATGGACCAGGGCACTGAACCCACCTGGGTCTCCAGACACCCTGGGACAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CCA 72 bp CTCTGCCATTCATGTCTGCTTCCCCAGGACCTGGCATaGAAGCGTGCGCCTGCCCAATGTGGCCGTCCAGTC +
Preference number: 6 (lower is better)
Translates to: LCHSCLLPQDLA*KRAPAQCGRPV
Trigger: GACTGGACGGCCACATTGGGCAGGCGCACGCTTCCATGCCAGGTCCTGGGGAAGCAGACATGAATGGCAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000485476.2
CDS CAA 72 bp TTCTTCCCACTGGCCTTAGCTGTAGCCACGATCCTCTaGATGGCGGCGGCCGACAGCTCCTCACCCTTGGGC +
Preference number: 6 (lower is better)
Translates to: FFPLALAVATIL*MAAADSSSPLG
Trigger: GCCCAAGGGTGAGGAGCTGTCGGCCGCCGCCATCAAGAGGATCGTGGCTACAGCTAAGGCCAGTGGGAAGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000374338.5
ENST00000485476.2
ENST00000488127.1
CDS CAA 90 bp ATCCAGGCCATCATCCAGCCAGACAACACTGCTGCCACTCAAGGCTaGTGGCCGCGGCACCTCGTCCATGTTGGTGGTGTTGGCGCTGAC +
Preference number: 6 (lower is better)
Translates to: IQAIIQPDNTAATQG*WPRHLVHVGGVGAD
Trigger: GTCAGCGCCAACACCACCAACATGGACGAGGTGCCGCGGCCACAAGCCTTGAGTGGCAGCAGTGTTGTCTGGCTGGATGATGGCCTGGAT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474283.1
CDS GCA 72 bp CTTCATCCAGGCCATCATCCAGCCAGACAACACTGCTaGCACTCAAGGCTTGTGGCCGCGGCACCTCGTCCA +
Preference number: 6 (lower is better)
Translates to: LHPGHHPARQHC*HSRLVAAAPRP
Trigger: TGGACGAGGTGCCGCGGCCACAAGCCTTGAGTGGCAGCAGTGTTGTCTGGCTGGATGATGGCCTGGATGAAG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474283.1
CDS GCA 72 bp ATCTGCTGGCCACACAACCACTCACCCAGACAACACTaGTGCCACTCAAGGCTTGTGGCCGCGGCACCTCGT +
Preference number: 6 (lower is better)
Translates to: ICWPHNHSPRQH*CHSRLVAAAPR
Trigger: ACGAGGTGCCGCGGCCACAAGCCTTGAGTGGCAGCAGTGTTGTCTGGGTGAGTGGTTGTGTGGCCAGCAGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CAA 90 bp CAGTCTTGGCGGGCCCCCAGGACGTCCCCTCCCTCTTGGCTGGCTTaGTCCCTCTTCTCTTTCTCTGCAGGACCAAGGCACAACATGTTG +
Preference number: 6 (lower is better)
Translates to: QSWRAPRTSPPSWLA*SLFSFSAGPRHNML
Trigger: CAACATGTTGTGCCTTGGTCCTGCAGAGAAAGAGAAGAGGGACAAAGCCAGCCAAGAGGGAGGGGACGTCCTGGGGGCCCGCCAAGACTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000484476.5
CDS GCA 72 bp GTGCAGAGGAAGGCGTGGCACTCGAGGCTCTGGTTGTaGTGGCTCTGGGCGATGTATGCAAACACCTTGTCG +
Preference number: 6 (lower is better)
Translates to: VQRKAWHSRLWL*WLWAMYANTLS
Trigger: CGACAAGGTGTTTGCATACATCGCCCAGAGCCAGCACAACCAGAGCCTCGAGTGCCACGCCTTCCTCTGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000374338.5
ENST00000462394.1
ENST00000488127.1
CDS CCA 72 bp CAGAGGAAGGCGTGGCACTCGAGGCTCTGGTTGTGCTaGCTCTGGGCGATGTATGCAAACACCTTGTCGTGC +
Preference number: 6 (lower is better)
Translates to: QRKAWHSRLWLC*LWAMYANTLSC
Trigger: GCACGACAAGGTGTTTGCATACATCGCCCAGAGCCAGCACAACCAGAGCCTCGAGTGCCACGCCTTCCTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000374338.5
ENST00000462394.1
ENST00000488127.1
CDS CCA 72 bp AGCCTCAGCAGAAAAGCGACAGGTGAGGTCCCTCCATaGCCTTCTGGTGAGGATGGGCAAGTGGCAAGGGTG +
Preference number: 6 (lower is better)
Translates to: SLSRKATGEVPP*PSGEDGQVARV
Trigger: CACCCTTGCCACTTGCCCATCCTCACCAGAAGGCCATGGAGGGACCTCACCTGTCGCTTTTCTGCTGAGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000470950.1
ENST00000488127.1
CDS CCA 72 bp TTCAAAAGGGACATTGTTCATCCCCTATCCTGCGCCTaGGCACTACCGGGCTGGGTCTGGTCCTCCCAGAGG +
Preference number: 6 (lower is better)
Translates to: FKRDIVHPLSCA*ALPGWVWSSQR
Trigger: CCTCTGGGAGGACCAGACCCAGCCCGGTAGTGCCCAGGCGCAGGATAGGGGATGAACAATGTCCCTTTTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CAA 72 bp CCTGGGCTGTCAGGCCAGTGTCCAGGACCTGAGGGTTaGTCCGAGACTGGGCAAGCCTCGAAAACGCTTCAT +
Preference number: 6 (lower is better)
Translates to: PGLSGQCPGPEG*SETGQASKTLH
Trigger: ATGAAGCGTTTTCGAGGCTTGCCCAGTCTCGGACAAACCCTCAGGTCCTGGACACTGGCCTGACAGCCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000374338.5
ENST00000470950.1
ENST00000474283.1
ENST00000484476.5
ENST00000488127.1
CDS CAA 72 bp ACCACTCACCCAGACAACACTGCTGCCACTCAAGGCTaGTGGCCGCGGCACCTCGTCCATGTTGGTGGTGTT +
Preference number: 6 (lower is better)
Translates to: TTHPDNTAATQG*WPRHLVHVGGV
Trigger: AACACCACCAACATGGACGAGGTGCCGCGGCCACAAGCCTTGAGTGGCAGCAGTGTTGTCTGGGTGAGTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CAA 90 bp ATCTTCCGCTTGGTGCAGAGGAAGGCGTGGCACTCGAGGCTCTGGTaGTGCTGGCTCTGGGCGATGTATGCAAACACCTTGTCGTGCATC +
Preference number: 6 (lower is better)
Translates to: IFRLVQRKAWHSRLW*CWLWAMYANTLSCI
Trigger: GATGCACGACAAGGTGTTTGCATACATCGCCCAGAGCCAGCACAACCAGAGCCTCGAGTGCCACGCCTTCCTCTGCACCAAGCGGAAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000374338.5
ENST00000462394.1
ENST00000488127.1
CDS CAA 90 bp GCTTTGTCCCTCTTCTCTTTCTCTGCAGGACCAAGGCACAACATGTaGGAGCCTCAGACCCCAGCACTCTGTCCCCAGCAATCACCGGGC +
Preference number: 6 (lower is better)
Translates to: ALSLFSFSAGPRHNM*EPQTPALCPQQSPG
Trigger: GCCCGGTGATTGCTGGGGACAGAGTGCTGGGGTCTGAGGCTCCAACATGTTGTGCCTTGGTCCTGCAGAGAAAGAGAAGAGGGACAAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000484476.5
CDS CCA 72 bp AGGTCCCTCCATGGCCTTCTGGTGAGGATGGGCAAGTaGCAAGGGTGGTTCCCAAACAGCAGAGAACAGGCT +
Preference number: 6 (lower is better)
Translates to: RSLHGLLVRMGK*QGWFPNSREQA
Trigger: AGCCTGTTCTCTGCTGTTTGGGAACCACCCTTGCCACTTGCCCATCCTCACCAGAAGGCCATGGAGGGACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000470950.1
ENST00000488127.1
CDS CAA 72 bp ATCATCCAGCCAGACAACACTGCTGCCACTCAAGGCTaGTGGCCGCGGCACCTCGTCCATGTTGGTGGTGTT +
Preference number: 6 (lower is better)
Translates to: IIQPDNTAATQG*WPRHLVHVGGV
Trigger: AACACCACCAACATGGACGAGGTGCCGCGGCCACAAGCCTTGAGTGGCAGCAGTGTTGTCTGGCTGGATGAT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474283.1
CDS CAA 72 bp TCAGTGCCCTGGTCCATGCTACCTGCCCGTGAGACCTaGGGCAAGTCACTGCTCCACGTTGAAACTCAGCTT +
Preference number: 6 (lower is better)
Translates to: SVPWSMLPARET*GKSLLHVETQL
Trigger: AAGCTGAGTTTCAACGTGGAGCAGTGACTTGCCCAAGGTCTCACGGGCAGGTAGCATGGACCAGGGCACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CAA 72 bp CTCTTCTCTTTCTCTGCAGGACCAAGGCACAACATGTaGGAGCCTCAGACCCCAGCACTCTGTCCCCAGCAA +
Preference number: 6 (lower is better)
Translates to: LFSFSAGPRHNM*EPQTPALCPQQ
Trigger: TTGCTGGGGACAGAGTGCTGGGGTCTGAGGCTCCAACATGTTGTGCCTTGGTCCTGCAGAGAAAGAGAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000484476.5
CDS CCA 72 bp CTGGTTGGTGAGGTTGTCTGTCAGGATAATTCCCCGTaGCGACACCTTCAGAGTCACCTTCTGCAGCTTCTT +
Preference number: 6 (lower is better)
Translates to: LVGEVVCQDNSP*RHLQSHLLQLL
Trigger: AAGAAGCTGCAGAAGGTGACTCTGAAGGTGTCGCCACGGGGAATTATCCTGACAGACAACCTCACCAACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000374338.5
ENST00000488127.1
CDS CAA 90 bp GAGATCCTGTATATGGACACGTTCTCAATGAGCTGGTTGGTGAGGTaGTCTGTCAGGATAATTCCCCGTGGCGACACCTTCAGAGTCACC +
Preference number: 6 (lower is better)
Translates to: EILYMDTFSMSWLVR*SVRIIPRGDTFRVT
Trigger: GGTGACTCTGAAGGTGTCGCCACGGGGAATTATCCTGACAGACAACCTCACCAACCAGCTCATTGAGAACGTGTCCATATACAGGATCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000374338.5
ENST00000462394.1
ENST00000488127.1
CDS TCA 72 bp AAGCCAAGCCAAAATTCCAAGTTCATGAGGGATAACTaGTGCCAGGAGTCCCACAGCCTCAGCAGAAAAGCG +
Preference number: 6 (lower is better)
Translates to: KPSQNSKFMRDN*CQESHSLSRKA
Trigger: CGCTTTTCTGCTGAGGCTGTGGGACTCCTGGCATCAGTTATCCCTCATGAACTTGGAATTTTGGCTTGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000470950.1
ENST00000488127.1
CDS CCA 72 bp ACCTTTCGGATGTCAGTTAATCCTCACAAGCACCTTTaGGGAGGGAGACGGCTGTTCCCATTTTTCAGATGG +
Preference number: 6 (lower is better)
Translates to: TFRMSVNPHKHL*GGRRLFPFFRW
Trigger: CCATCTGAAAAATGGGAACAGCCGTCTCCCTCCCCAAAGGTGCTTGTGAGGATTAACTGACATCCGAAAGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000484476.5
CDS CAA 72 bp TATATGGACACGTTCTCAATGAGCTGGTTGGTGAGGTaGTCTGTCAGGATAATTCCCCGTGGCGACACCTTC +
Preference number: 6 (lower is better)
Translates to: YMDTFSMSWLVR*SVRIIPRGDTF
Trigger: GAAGGTGTCGCCACGGGGAATTATCCTGACAGACAACCTCACCAACCAGCTCATTGAGAACGTGTCCATATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000374338.5
ENST00000462394.1
ENST00000488127.1
CDS CAA 72 bp GAGATCCTGTATATGGACACGTTCTCAATGAGCTGGTaGGTGAGGTTGTCTGTCAGGATAATTCCCCGTGGC +
Preference number: 6 (lower is better)
Translates to: EILYMDTFSMSW*VRLSVRIIPRG
Trigger: GCCACGGGGAATTATCCTGACAGACAACCTCACCAACCAGCTCATTGAGAACGTGTCCATATACAGGATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000374338.5
ENST00000462394.1
ENST00000488127.1
CDS GCA 72 bp GGCGATGTATGCAAACACCTTGTCGTGCATCTTGTCTaGTGTGCAATAGGAGATCCTGTATATGGACACGTT +
Preference number: 6 (lower is better)
Translates to: GDVCKHLVVHLV*CAIGDPVYGHV
Trigger: AACGTGTCCATATACAGGATCTCCTATTGCACAGCAGACAAGATGCACGACAAGGTGTTTGCATACATCGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000374338.5
ENST00000462394.1
ENST00000488127.1
CDS GCA 72 bp TGTATGCAAACACCTTGTCGTGCATCTTGTCTGCTGTaGAATAGGAGATCCTGTATATGGACACGTTCTCAA +
Preference number: 6 (lower is better)
Translates to: CMQTPCRASCLL*NRRSCIWTRSQ
Trigger: TTGAGAACGTGTCCATATACAGGATCTCCTATTGCACAGCAGACAAGATGCACGACAAGGTGTTTGCATACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000374338.5
ENST00000462394.1
ENST00000488127.1
CDS CCA 72 bp GACCAGTGTAATGTGGTCATGCAAGATGTTAACAATTaGGGAATCTGGATGACGGGTGAACAGGAATTCTCT +
Preference number: 6 (lower is better)
Translates to: DQCNVVMQDVNN*GIWMTGEQEFS
Trigger: AGAGAATTCCTGTTCACCCGTCATCCAGATTCCCCAATTGTTAACATCTTGCATGACCACATTACACTGGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CCA 72 bp TATCGTGTTTGTTTCCTGATTCTGACCAGTGTAATGTaGTCATGCAAGATGTTAACAATTGGGGAATCTGGA +
Preference number: 6 (lower is better)
Translates to: YRVCFLILTSVM*SCKMLTIGESG
Trigger: TCCAGATTCCCCAATTGTTAACATCTTGCATGACCACATTACACTGGTCAGAATCAGGAAACAAACACGATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CAA 72 bp TTGAAACTCAGCTTTTCCTTCAATAAGAGGAGGGCATaGGACCTGATGACTTCTATGGCTTTCAAATTCCAA +
Preference number: 6 (lower is better)
Translates to: LKLSFSFNKRRA*DLMTSMAFKFQ
Trigger: TTGGAATTTGAAAGCCATAGAAGTCATCAGGTCCAATGCCCTCCTCTTATTGAAGGAAAAGCTGAGTTTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000488127.1
CDS CAA 72 bp AAGTTCTATAGATTATATAACAGCACAGTATCGTGTTaGTTTCCTGATTCTGACCAGTGTAATGTGGTCATG +
Preference number: 6 (lower is better)
Translates to: KFYRLYNSTVSC*FPDSDQCNVVM
Trigger: CATGACCACATTACACTGGTCAGAATCAGGAAACAAACACGATACTGTGCTGTTATATAATCTATAGAACTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000488127.1