RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LDLRAD2 (Homo sapiens)

Ensembl gene IDs: ENSG00000187942

Ensembl transcript IDs: ENST00000344642.7, ENST00000484271.1, ENST00000543870.1

Found 339 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCGGGTGACAGCACTGCGGTAAGGGACCCTGCCGGGCACTCGGGATaGGGCCCAGCGTTCTGGAGTGGGGCAGGACGCCCCCTACCATGG +
Preference number: 1 (lower is better)
Translates to: PGDSTAVRDPAGHSG*GPAFWSGAGRPLPW
Trigger: CCATGGTAGGGGGCGTCCTGCCCCACTCCAGAACGCTGGGCCCCATCCCGAGTGCCCGGCAGGGTCCCTTACCGCAGTGCTGTCACCCGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 90 bp GAGCCCACAGGCCCTGTCCTCTCACCTCCCGGCAGGCGGAGCCCCTaGCGTGGCCACGCTGACCGGGGGCAGATTCTCCTCAGGCATCAC +
Preference number: 1 (lower is better)
Translates to: EPTGPVLSPPGRRSP*RGHADRGQILLRHH
Trigger: GTGATGCCTGAGGAGAATCTGCCCCCGGTCAGCGTGGCCACGTCAGGGGCTCCGCCTGCCGGGAGGTGAGAGGACAGGGCCTGTGGGCTC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 90 bp CGCTCTTCCTCCGCAGCCTGCCCGAGGTGCCCGAGACCATCGAGCTaGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTGGCAGG +
Preference number: 1 (lower is better)
Translates to: RSSSAACPRCPRPSS*RFGPAQPVASCSGR
Trigger: CCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGATGGTCTCGGGCACCTCGGGCAGGCTGCGGAGGAAGAGCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 90 bp GCCTGGTCTCTGAGGACCCCATCAATGACGGCGAGTGGCACCGGGTaGCAGCACTGCGGTAAGGGACCCTGCCGGGCACTCGGGATGGGG +
Preference number: 1 (lower is better)
Translates to: AWSLRTPSMTASGTG*QHCGKGPCRALGMG
Trigger: CCCCATCCCGAGTGCCCGGCAGGGTCCCTTACCGCAGTGCTGTCACCCGGTGCCACTCGCCGTCATTGATGGGGTCCTCAGAGACCAGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 90 bp GCAGGGAGGGCCGCAGAGGTTCCATCCAAGTCGACGGTGAGGAGCTaGTCAGCGGCCGGTCCCCAGGTCCCAACGTGGCAGTCAACGCCA +
Preference number: 1 (lower is better)
Translates to: AGRAAEVPSKSTVRS*SAAGPQVPTWQSTP
Trigger: TGGCGTTGACTGCCACGTTGGGACCTGGGGACCGGCCGCTGACCAGCTCCTCACCGTCGACTTGGATGGAACCTCTGCGGCCCTCCCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 90 bp ACCCACCAGCCAGGGCTCGGGCTTCCATCTCGGACTGAACTCCGCTaGGGGCAGGCGAGTGCCCCAGGAGTGGGAGGAAACCTGGGTGCA +
Preference number: 1 (lower is better)
Translates to: THQPGLGLPSRTELR*GQASAPGVGGNLGA
Trigger: TGCACCCAGGTTTCCTCCCACTCCTGGGGCACTCGCCTGCCCCCAGCGGAGTTCAGTCCGAGATGGAAGCCCGAGCCCTGGCTGGTGGGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 90 bp AAGGGACCCTGCCGGGCACTCGGGATGGGGCCCAGCGTTCTGGAGTaGGGCAGGACGCCCCCTACCATGGGCAGAGAGGCAGGTATTGAG +
Preference number: 1 (lower is better)
Translates to: KGPCRALGMGPSVLE*GRTPPTMGREAGIE
Trigger: CTCAATACCTGCCTCTCTGCCCATGGTAGGGGGCGTCCTGCCCCACTCCAGAACGCTGGGCCCCATCCCGAGTGCCCGGCAGGGTCCCTT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR GCA 90 bp GACTTCTGTCCCCTCACCCGCTCTTCCTCCGCAGCCTGCCCGAGGTaGCCGAGACCATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTG +
Preference number: 1 (lower is better)
Translates to: DFCPLTRSSSAACPR*PRPSSWRFGPAQPV
Trigger: CACTGGCTGTGCTGGTCCGAACCTCCAGCTCGATGGTCTCGGGCACCTCGGGCAGGCTGCGGAGGAAGAGCGGGTGAGGGGACAGAAGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 90 bp TGTCCTCTCACCTCCCGGCAGGCGGAGCCCCTGACGTGGCCACGCTaGCCGGGGGCAGATTCTCCTCAGGCATCACAGGCTGTGTCAAGA +
Preference number: 1 (lower is better)
Translates to: CPLTSRQAEPLTWPR*PGADSPQASQAVSR
Trigger: TCTTGACACAGCCTGTGATGCCTGAGGAGAATCTGCCCCCGGTCAGCGTGGCCACGTCAGGGGCTCCGCCTGCCGGGAGGTGAGAGGACA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR GCA 90 bp GGAATCTGGGACTTCTGTCCCCTCACCCGCTCTTCCTCCGCAGCCTaGCCGAGGTGCCCGAGACCATCGAGCTGGAGGTTCGGACCAGCA +
Preference number: 1 (lower is better)
Translates to: GIWDFCPLTRSSSAA*PRCPRPSSWRFGPA
Trigger: TGCTGGTCCGAACCTCCAGCTCGATGGTCTCGGGCACCTCGGGCAGGCTGCGGAGGAAGAGCGGGTGAGGGGACAGAAGTCCCAGATTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 90 bp TCGACGGTGAGGAGCTGGTCAGCGGCCGGTCCCCAGGTCCCAACGTaGCAGTCAACGCCAAGGGCAGCGTCTACATCGGTAAGTCTGGGG +
Preference number: 1 (lower is better)
Translates to: STVRSWSAAGPQVPT*QSTPRAASTSVSLG
Trigger: CCCCAGACTTACCGATGTAGACGCTGCCCTTGGCGTTGACTGCCACGTTGGGACCTGGGGACCGGCCGCTGACCAGCTCCTCACCGTCGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 90 bp ATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTaGCAGGGTGTGGTGAGTGTGGGTATCCGGCTGGGCTCTTGGGGC +
Preference number: 1 (lower is better)
Translates to: IELEVRTSTASGLLL*QGVVSVGIRLGSWG
Trigger: GCCCCAAGAGCCCAGCCGGATACCCACACTCACCACACCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 90 bp TCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTaGGACGCCTGGCCTCTGTGTCCTAGAAGGGACCCTCCTGTGGTC +
Preference number: 1 (lower is better)
Translates to: SSSSAILPVAPRLWG*DAWPLCPRRDPPVV
Trigger: GACCACAGGAGGGTCCCTTCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
3UTR CCA 90 bp CCTGGGCTGGACTGGAGGTGGGCATGCCACCCTCACACACACAGCTaGGCAAAGCCACAAGGCTGGCCAGCAAGGCAGGTTGGATGGGAG +
Preference number: 1 (lower is better)
Translates to: PGLDWRWACHPHTHS*AKPQGWPARQVGWE
Trigger: CTCCCATCCAACCTGCCTTGCTGGCCAGCCTTGTGGCTTTGCCCAGCTGTGTGTGTGAGGGTGGCATGCCCACCTCCAGTCCAGCCCAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 90 bp CTGGCATTGGAAGGGCCCATGGGCCTAATGGGGAGGATGGGAATCTaGGACTTCTGTCCCCTCACCCGCTCTTCCTCCGCAGCCTGCCCG +
Preference number: 1 (lower is better)
Translates to: LALEGPMGLMGRMGI*DFCPLTRSSSAACP
Trigger: CGGGCAGGCTGCGGAGGAAGAGCGGGTGAGGGGACAGAAGTCCCAGATTCCCATCCTCCCCATTAGGCCCATGGGCCCTTCCAATGCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 90 bp AGGCCCAGGGACTCCTCCAACAGACAACGGACGGACGGATGCCGCTaGTGCTCAGGAAGAGCTAGTGCCTTAGGTGGGGGAAGGCAGGAC +
Preference number: 1 (lower is better)
Translates to: RPRDSSNRQRTDGCR*CSGRASALGGGRQD
Trigger: GTCCTGCCTTCCCCCACCTAAGGCACTAGCTCTTCCTGAGCACCAGCGGCATCCGTCCGTCCGTTGTCTGTTGGAGGAGTCCCTGGGCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 90 bp AGCCCTTGGGCAGTTCTCACTCCTAGGAGAGCCAACCTCGGCTTGTaGGCTGGTGCCCCACAGCTACCTGAGACGGGCATCGCAGGAGTC +
Preference number: 1 (lower is better)
Translates to: SPWAVLTPRRANLGL*AGAPQLPETGIAGV
Trigger: GACTCCTGCGATGCCCGTCTCAGGTAGCTGTGGGGCACCAGCCCACAAGCCGAGGTTGGCTCTCCTAGGAGTGAGAACTGCCCAAGGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR GCA 90 bp CCCAGGGACTCCTCCAACAGACAACGGACGGACGGATGCCGCTGGTaGTCAGGAAGAGCTAGTGCCTTAGGTGGGGGAAGGCAGGACTCA +
Preference number: 1 (lower is better)
Translates to: PRDSSNRQRTDGCRW*SGRASALGGGRQDS
Trigger: TGAGTCCTGCCTTCCCCCACCTAAGGCACTAGCTCTTCCTGAGCACCAGCGGCATCCGTCCGTCCGTTGTCTGTTGGAGGAGTCCCTGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR GCA 90 bp GGGAGGACCAGGAAGTTTGTGGAAAGGGGCCTGACCCAGTTCCACTaGAGGGAGGGCCGCAGAGGTTCCATCCAAGTCGACGGTGAGGAG +
Preference number: 1 (lower is better)
Translates to: GRTRKFVERGLTQFH*REGRRGSIQVDGEE
Trigger: CTCCTCACCGTCGACTTGGATGGAACCTCTGCGGCCCTCCCTGCAGTGGAACTGGGTCAGGCCCCTTTCCACAAACTTCCTGGTCCTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 90 bp CCACTGTCCCCCTACCCACCGATGGAGCCCCCAGATAGAGCTGGGTaGCCTGTTTCTGCAGCCCTTGGGCAGTTCTCACTCCTAGGAGAG +
Preference number: 1 (lower is better)
Translates to: PLSPYPPMEPPDRAG*PVSAALGQFSLLGE
Trigger: CTCTCCTAGGAGTGAGAACTGCCCAAGGGCTGCAGAAACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTGGGTAGGGGGACAGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 90 bp AGGCAGGTTGGATGGGAGTGGGCACCTCAGAAAGTCACCAGGACTTaGGGTCAGGAACAGTGGCTGGGTGGGCCCAGAACTGCCCCCACT +
Preference number: 1 (lower is better)
Translates to: RQVGWEWAPQKVTRT*GQEQWLGGPRTAPT
Trigger: AGTGGGGGCAGTTCTGGGCCCACCCAGCCACTGTTCCTGACCCCAAGTCCTGGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 90 bp CTCTCCCACAGATGCCCCTGGGCAGTACGGAGCCTATTTCCACGATaGTGGCTTCCTCGCCTTCCCTGGCCATGTCTTCTCCAGGAGGTG +
Preference number: 1 (lower is better)
Translates to: LSHRCPWAVRSLFPR*WLPRLPWPCLLQEV
Trigger: CACCTCCTGGAGAAGACATGGCCAGGGAAGGCGAGGAAGCCATCATCGTGGAAATAGGCTCCGTACTGCCCAGGGGCATCTGTGGGAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 90 bp TGGGCAAAGCCACAAGGCTGGCCAGCAAGGCAGGTTGGATGGGAGTaGGCACCTCAGAAAGTCACCAGGACTTGGGGTCAGGAACAGTGG +
Preference number: 1 (lower is better)
Translates to: WAKPQGWPARQVGWE*APQKVTRTWGQEQW
Trigger: CCACTGTTCCTGACCCCAAGTCCTGGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGCCAGCCTTGTGGCTTTGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 90 bp TTTTGTAAGAAACCGAGGCGATGCCACGCTTTGCTGCTACCGCCCTaGGCTGGACTGGAGGTGGGCATGCCACCCTCACACACACAGCTG +
Preference number: 1 (lower is better)
Translates to: FCKKPRRCHALLLPP*AGLEVGMPPSHTQL
Trigger: CAGCTGTGTGTGTGAGGGTGGCATGCCCACCTCCAGTCCAGCCCAGGGCGGTAGCAGCAAAGCGTGGCATCGCCTCGGTTTCTTACAAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 90 bp TACCTGAGACGGGCATCGCAGGAGTCTCTGCCACCCACTCAGGATTaGGAATTGTCTTTAGTGCCGGCTGTGGAGCAAAAGGCAGCTCAC +
Preference number: 1 (lower is better)
Translates to: YLRRASQESLPPTQD*ELSLVPAVEQKAAH
Trigger: GTGAGCTGCCTTTTGCTCCACAGCCGGCACTAAAGACAATTCCCAATCCTGAGTGGGTGGCAGAGACTCCTGCGATGCCCGTCTCAGGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 90 bp GTTCAGCGGGGGAAAGAAAGAGCTTGGGAAACAGGGACAGACTTCTaGGTCTGGAGTCTCGATATCAGAGGGAGGGGACTCTGTCGTGGG +
Preference number: 1 (lower is better)
Translates to: VQRGKERAWETGTDF*VWSLDIRGRGLCRG
Trigger: CCCACGACAGAGTCCCCTCCCTCTGATATCGAGACTCCAGACTCAGAAGTCTGTCCCTGTTTCCCAAGCTCTTTCTTTCCCCCGCTGAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CCA 90 bp TTGGGCCTGGATGACTGCAGGTACCAGCTGGGTAGTGGGGAGGCCCGCCTGGTCTGGGGCCCAGCGTTCTaGAGTGGGGCAGGACGCCCC +
Preference number: 2 (lower is better)
Translates to: LGLDDCRYQLGSGEARLVWGPAF*SGAGRP
Trigger: GGGGCGTCCTGCCCCACTCCAGAACGCTGGGCCCCA...GACCAGGCGGGCCTCCCCACTACCCAGCTGGTACCTGCAGTCATCCAGGCCCAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CCA 90 bp ATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTGGCAGGGTCGCCCTGGGCTGGACTaGAGGTGGGCATGCCACCCT +
Preference number: 2 (lower is better)
Translates to: IELEVRTSTASGLLLWQGRPGLD*RWACHP
Trigger: AGGGTGGCATGCCCACCTCCAGTCCAGCCCAGGGCG...ACCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR TCA 90 bp ATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTGGCAGGGTCTGACGTGGCCACGCTaGCCGGGGGCAGATTCTCCT +
Preference number: 2 (lower is better)
Translates to: IELEVRTSTASGLLLWQGLTWPR*PGADSP
Trigger: AGGAGAATCTGCCCCCGGTCAGCGTGGCCACGTCAG...ACCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CCA 90 bp ATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTGGCAGGGTTTGCTGCTACCGCCCTaGGCTGGACTGGAGGTGGGC +
Preference number: 2 (lower is better)
Translates to: IELEVRTSTASGLLLWQGLLLPP*AGLEVG
Trigger: GCCCACCTCCAGTCCAGCCCAGGGCGGTAGCAGCAA...ACCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGAT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CCA 90 bp CCACTGTCCCCCTACCCACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTCCTACCACGTCCTCCTaGCCTGCATTCCCACCCCCT +
Preference number: 2 (lower is better)
Translates to: PLSPYPPMEPPDRAGWPVPTTSS*PAFPPP
Trigger: AGGGGGTGGGAATGCAGGCCAGGAGGACGTGGTAGG...AACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTGGGTAGGGGGACAGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CCA 90 bp ATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTGGCAGGGTGTCAGGAACAGTGGCTaGGTGGGCCCAGAACTGCCC +
Preference number: 2 (lower is better)
Translates to: IELEVRTSTASGLLLWQGVRNSG*VGPELP
Trigger: GGGCAGTTCTGGGCCCACCCAGCCACTGTTCCTGAC...ACCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CAA 90 bp TGCAGCCCTTGGGCAGTTCTCACTCCTAGGAGAGCCAACCTCGGCTaGTGGGCTGGTGCCCCACAGCTACCTGAGACGGGCATCGCAGGA +
Preference number: 2 (lower is better)
Translates to: CSPWAVLTPRRANLG*WAGAPQLPETGIAG
Trigger: TCCTGCGATGCCCGTCTCAGGTAGCTGTGGGGCACCAGCCCACAAGCCGAGGTTGGCTCTCCTAGGAGTGAGAACTGCCCAAGGGCTGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR TCA 90 bp ATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTGGCAGGGTGGCAGGACTCACGACTaGGAGAGAGAGGAGGGGGAT +
Preference number: 2 (lower is better)
Translates to: IELEVRTSTASGLLLWQGGRTHD*EREEGD
Trigger: ATCCCCCTCCTCTCTCTCTCAGTCGTGAGTCCTGCC...ACCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR GCA 90 bp CACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTTCTGCAGCCCTTGGGCGACGGATGCCGCTGGTaGTCAGGAAGAGCTAGTGCC +
Preference number: 2 (lower is better)
Translates to: HRWSPQIELGGLFLQPLGDGCRW*SGRASA
Trigger: GGCACTAGCTCTTCCTGAGCACCAGCGGCATCCGTC...GCCCAAGGGCTGCAGAAACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CCA 90 bp TTCAAGACGGGCACCTTGTCTTCAGGTAGGTCCTGGCACCTGGCCCTTCCTCTCGTGGCCCCCAGACTGTaGGGTTGGGACGCCTGGCCT +
Preference number: 2 (lower is better)
Translates to: FKTGTLSSGRSWHLALPLVAPRL*GWDAWP
Trigger: AGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCAC...GAGAGGAAGGGCCAGGTGCCAGGACCTACCTGAAGACAAGGTGCCCGTCTTGAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CCA 90 bp TTGGGCCTGGATGACTGCAGGTACCAGCTGGGTAGTGGGGAGGCCCGCCTGGTCCCTCACACACACAGCTaGGCAAAGCCACAAGGCTGG +
Preference number: 2 (lower is better)
Translates to: LGLDDCRYQLGSGEARLVPHTHS*AKPQGW
Trigger: CCAGCCTTGTGGCTTTGCCCAGCTGTGTGTGTGAGG...GACCAGGCGGGCCTCCCCACTACCCAGCTGGTACCTGCAGTCATCCAGGCCCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CCA 90 bp GGTGAGACTGGCATTGGAAGGGCCCATGGGCCTAATGGGGAGGATGGGAATCTGTCGACGGTGAGGAGCTaGTCAGCGGCCGGTCCCCAG +
Preference number: 2 (lower is better)
Translates to: GETGIGRAHGPNGEDGNLSTVRS*SAAGPQ
Trigger: CTGGGGACCGGCCGCTGACCAGCTCCTCACCGTCGA...CAGATTCCCATCCTCCCCATTAGGCCCATGGGCCCTTCCAATGCCAGTCTCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CCA 90 bp TTCAAGACGGGCACCTTGTCTTCAGGTAGGTCCTGGCACCTGGCCCTTCCTCTCGAGGGGACTCTGTCGTaGGGCCGGGGAGGACCAGGA +
Preference number: 2 (lower is better)
Translates to: FKTGTLSSGRSWHLALPLEGTLS*GRGGPG
Trigger: TCCTGGTCCTCCCCGGCCCCACGACAGAGTCCCCTC...GAGAGGAAGGGCCAGGTGCCAGGACCTACCTGAAGACAAGGTGCCCGTCTTGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CCA 90 bp ATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTGGCAGGGTATCAATGACGGCGAGTaGCACCGGGTGACAGCACTG +
Preference number: 2 (lower is better)
Translates to: IELEVRTSTASGLLLWQGINDGE*HRVTAL
Trigger: CAGTGCTGTCACCCGGTGCCACTCGCCGTCATTGAT...ACCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CAA 90 bp CCTCGCCTTCCCTGGCCATGTCTTCTCCAGGAGGTGAGACTGGCATaGGAAGGGCCCATGGGCCTAATGGGGAGGATGGGAATCTGGGAC +
Preference number: 2 (lower is better)
Translates to: PRLPWPCLLQEVRLA*EGPMGLMGRMGIWD
Trigger: GTCCCAGATTCCCATCCTCCCCATTAGGCCCATGGGCCCTTCCAATGCCAGTCTCACCTCCTGGAGAAGACATGGCCAGGGAAGGCGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR GCA 90 bp GGCTGGCCAGCAAGGCAGGTTGGATGGGAGTGGGCACCTCAGAAAGTCACCAGGAAGATCCAGCTCAAGTaGCATCCTGCCAGTGGCCCC +
Preference number: 2 (lower is better)
Translates to: GWPARQVGWEWAPQKVTRKIQLK*HPASGP
Trigger: GGGGCCACTGGCAGGATGGCACTTGAGCTGGATCTT...CCTGGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGCCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CCA 90 bp TGCAGGAGCCTGAAGATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTTGGGGTTGGGACGCCTaGCCTCTGTGTCCTAGAAGG +
Preference number: 2 (lower is better)
Translates to: CRSLKIQLKCHPASGPQTWGWDA*PLCPRR
Trigger: CCTTCTAGGACACAGAGGCCAGGCGTCCCAACCCCA...AGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGATCTTCAGGCTCCTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
3UTR-3UTR TCA 90 bp GGTGAGACTGGCATTGGAAGGGCCCATGGGCCTAATGGGGAGGATGGGAATCTGTTGTGGAAAGGGGCCTaGCCCAGTTCCACTGCAGGG +
Preference number: 2 (lower is better)
Translates to: GETGIGRAHGPNGEDGNLLWKGA*PSSTAG
Trigger: CCCTGCAGTGGAACTGGGTCAGGCCCCTTTCCACAA...CAGATTCCCATCCTCCCCATTAGGCCCATGGGCCCTTCCAATGCCAGTCTCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR GCA 90 bp TCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTTTCTTAATAAACGGTaGTATCCCCGCCAGGGGCCT +
Preference number: 2 (lower is better)
Translates to: SSSSAILPVAPRLWGWDAFLNKR*YPRQGP
Trigger: AGGCCCCTGGCGGGGATAGCACCGTTTATTAAGAAA...GGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
3UTR-3UTR GCA 90 bp GGTGAGACTGGCATTGGAAGGGCCCATGGGCCTAATGGGGAGGATGGGAATCTGCAACGGACGGACGGATaGCGCTGGTGCTCAGGAAGA +
Preference number: 2 (lower is better)
Translates to: GETGIGRAHGPNGEDGNLQRTDG*RWCSGR
Trigger: TCTTCCTGAGCACCAGCGGCATCCGTCCGTCCGTTG...CAGATTCCCATCCTCCCCATTAGGCCCATGGGCCCTTCCAATGCCAGTCTCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CCA 90 bp ATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTGGCAGGGTAGGAAGCTGTGTTTGTaGGGCCCGATCTCTCGTTCA +
Preference number: 2 (lower is better)
Translates to: IELEVRTSTASGLLLWQGRKLCL*GPISRS
Trigger: TGAACGAGAGATCGGGCCCCACAAACACAGCTTCCT...ACCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CAA 90 bp AGACGGGCATCGCAGGAGTCTCTGCCACCCACTCAGGATTGGGAATaGTCTTTAGTGCCGGCTGTGGAGCAAAAGGCAGCTCACCCCTGG +
Preference number: 2 (lower is better)
Translates to: RRASQESLPPTQDWE*SLVPAVEQKAAHPW
Trigger: CCAGGGGTGAGCTGCCTTTTGCTCCACAGCCGGCACTAAAGACAATTCCCAATCCTGAGTGGGTGGCAGAGACTCCTGCGATGCCCGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR GCA 90 bp ATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCTTTCTTAATAAACGGTaGTATCCCCGCCAGGGGCCT +
Preference number: 2 (lower is better)
Translates to: IQLKCHPASGPQTVGLGRFLNKR*YPRQGP
Trigger: AGGCCCCTGGCGGGGATAGCACCGTTTATTAAGAAA...GCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
3UTR-3UTR CCA 90 bp GGGAGGACCAGGAAGTTTGTGGAAAGGGGCCTGACCCAGTTCCACTGCAGGGAGCCAGATAGAGCTGGGTaGCCTGTTTCTGCAGCCCTT +
Preference number: 2 (lower is better)
Translates to: GRTRKFVERGLTQFHCREPDRAG*PVSAAL
Trigger: AAGGGCTGCAGAAACAGGCCACCCAGCTCTATCTGG...CTCCCTGCAGTGGAACTGGGTCAGGCCCCTTTCCACAAACTTCCTGGTCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CCA 90 bp TTCAAGACGGGCACCTTGTCTTCAGGTAGGTCCTGGCACCTGGCCCTTCCTCTCGCAAAGCCACAAGGCTaGCCAGCAAGGCAGGTTGGA +
Preference number: 2 (lower is better)
Translates to: FKTGTLSSGRSWHLALPLAKPQG*PARQVG
Trigger: TCCAACCTGCCTTGCTGGCCAGCCTTGTGGCTTTGC...GAGAGGAAGGGCCAGGTGCCAGGACCTACCTGAAGACAAGGTGCCCGTCTTGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CAA 90 bp CTACCTGAGACGGGCATCGCAGGAGTCTCTGCCACCCACTCAGGATaGGGAATTGTCTTTAGTGCCGGCTGTGGAGCAAAAGGCAGCTCA +
Preference number: 2 (lower is better)
Translates to: LPETGIAGVSATHSG*GIVFSAGCGAKGSS
Trigger: TGAGCTGCCTTTTGCTCCACAGCCGGCACTAAAGACAATTCCCAATCCTGAGTGGGTGGCAGAGACTCCTGCGATGCCCGTCTCAGGTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR GCA 90 bp TTCAAGACGGGCACCTTGTCTTCAGGTAGGTCCTGGCACCTGGCCCTTCCTCTCGGGAGGAAACCTGGGTaGAGAAATGAGGAAGCTGTG +
Preference number: 2 (lower is better)
Translates to: FKTGTLSSGRSWHLALPLGRKPG*RNEEAV
Trigger: CACAGCTTCCTCATTTCTGCACCCAGGTTTCCTCCC...GAGAGGAAGGGCCAGGTGCCAGGACCTACCTGAAGACAAGGTGCCCGTCTTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CAA 90 bp TGTTTGTGGGGCCCGATCTCTCGTTCAGCGGGGGAAAGAAAGAGCTaGGGAAACAGGGACAGACTTCTGAGTCTGGAGTCTCGATATCAG +
Preference number: 2 (lower is better)
Translates to: CLWGPISRSAGERKS*GNRDRLLSLESRYQ
Trigger: CTGATATCGAGACTCCAGACTCAGAAGTCTGTCCCTGTTTCCCAAGCTCTTTCTTTCCCCCGCTGAACGAGAGATCGGGCCCCACAAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CCA 90 bp ATTATTATGAATTTTTGTAAGAAACCGAGGCGATGCCACGCTTTGCTGCTACCGCCCCCTACCCACCGATaGAGCCCCCAGATAGAGCTG +
Preference number: 2 (lower is better)
Translates to: IIMNFCKKPRRCHALLLPPPTHR*SPQIEL
Trigger: CAGCTCTATCTGGGGGCTCCATCGGTGGGTAGGGGG...CGGTAGCAGCAAAGCGTGGCATCGCCTCGGTTTCTTACAAAAATTCATAATAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CCA 90 bp ATTATTATGAATTTTTGTAAGAAACCGAGGCGATGCCACGCTTTGCTGCTACCGTGTTTCTGCAGCCCTTaGGCAGTTCTCACTCCTAGG +
Preference number: 2 (lower is better)
Translates to: IIMNFCKKPRRCHALLLPCFCSP*AVLTPR
Trigger: CCTAGGAGTGAGAACTGCCCAAGGGCTGCAGAAACA...CGGTAGCAGCAAAGCGTGGCATCGCCTCGGTTTCTTACAAAAATTCATAATAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CAA 90 bp TATTTGCAGCTACTGTCATGTGATAAGCAAATACTAGTAACAAAGTaGCAGGTCCTACCACTGCTACTTTGGTTTCTTGCCTACATCTCA +
Preference number: 2 (lower is better)
Translates to: YLQLLSCDKQILVTK*QVLPLLLWFLAYIS
Trigger: TGAGATGTAGGCAAGAAACCAAAGTAGCAGTGGTAGGACCTGCAACTTTGTTACTAGTATTTGCTTATCACATGACAGTAGCTGCAAATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 72 bp GGCCCTGTCCTCTCACCTCCCGGCAGGCGGAGCCCCTaGCGTGGCCACGCTGACCGGGGGCAGATTCTCCTC +
Preference number: 3 (lower is better)
Translates to: GPVLSPPGRRSP*RGHADRGQILL
Trigger: GAGGAGAATCTGCCCCCGGTCAGCGTGGCCACGTCAGGGGCTCCGCCTGCCGGGAGGTGAGAGGACAGGGCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp AGCACTGCGGTAAGGGACCCTGCCGGGCACTCGGGATaGGGCCCAGCGTTCTGGAGTGGGGCAGGACGCCCC +
Preference number: 3 (lower is better)
Translates to: STAVRDPAGHSG*GPAFWSGAGRP
Trigger: GGGGCGTCCTGCCCCACTCCAGAACGCTGGGCCCCATCCCGAGTGCCCGGCAGGGTCCCTTACCGCAGTGCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp TGCCGGGCACTCGGGATGGGGCCCAGCGTTCTGGAGTaGGGCAGGACGCCCCCTACCATGGGCAGAGAGGCA +
Preference number: 3 (lower is better)
Translates to: CRALGMGPSVLE*GRTPPTMGREA
Trigger: TGCCTCTCTGCCCATGGTAGGGGGCGTCCTGCCCCACTCCAGAACGCTGGGCCCCATCCCGAGTGCCCGGCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR GCA 72 bp TCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTGGTaGTGCACTCGGCCCGACCCGGCGCCCCGCCCCCAC +
Preference number: 3 (lower is better)
Translates to: SPQASQAVSRTW*CTRPDPAPRPH
Trigger: GTGGGGGCGGGGCGCCGGGTCGGGCCGAGTGCAGCACCAGGTTCTTGACACAGCCTGTGATGCCTGAGGAGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR GCA 72 bp CCCCTCACCCGCTCTTCCTCCGCAGCCTGCCCGAGGTaGCCGAGACCATCGAGCTGGAGGTTCGGACCAGCA +
Preference number: 3 (lower is better)
Translates to: PLTRSSSAACPR*PRPSSWRFGPA
Trigger: TGCTGGTCCGAACCTCCAGCTCGATGGTCTCGGGCACCTCGGGCAGGCTGCGGAGGAAGAGCGGGTGAGGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp TCCGCAGCCTGCCCGAGGTGCCCGAGACCATCGAGCTaGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGC +
Preference number: 3 (lower is better)
Translates to: SAACPRCPRPSS*RFGPAQPVASC
Trigger: GCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGATGGTCTCGGGCACCTCGGGCAGGCTGCGGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 72 bp CAGGGAGGGCCGCAGAGGTTCCATCCAAGTCGACGGTaGGGAGCTGGTCAGCGGCCGGTCCCCAGGTCCCAA +
Preference number: 3 (lower is better)
Translates to: QGGPQRFHPSRR*GAGQRPVPRSQ
Trigger: TTGGGACCTGGGGACCGGCCGCTGACCAGCTCCTCACCGTCGACTTGGATGGAACCTCTGCGGCCCTCCCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 72 bp AACCCACCAGCCAGGGCTCGGGCTTCCATCTCGGACTaGACTCCGCTGGGGGCAGGCGAGTGCCCCAGGAGT +
Preference number: 3 (lower is better)
Translates to: NPPARARASISD*TPLGAGECPRS
Trigger: ACTCCTGGGGCACTCGCCTGCCCCCAGCGGAGTTCAGTCCGAGATGGAAGCCCGAGCCCTGGCTGGTGGGTT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp GATTCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTaGTGCTGCACTCGGCCCGACCCGGCGCCCCGCCCC +
Preference number: 3 (lower is better)
Translates to: DSPQASQAVSRT*CCTRPDPAPRP
Trigger: GGGGCGGGGCGCCGGGTCGGGCCGAGTGCAGCACCAGGTTCTTGACACAGCCTGTGATGCCTGAGGAGAATC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp GCCGCAGAGGTTCCATCCAAGTCGACGGTGAGGAGCTaGTCAGCGGCCGGTCCCCAGGTCCCAACGTGGCAG +
Preference number: 3 (lower is better)
Translates to: AAEVPSKSTVRS*SAAGPQVPTWQ
Trigger: CTGCCACGTTGGGACCTGGGGACCGGCCGCTGACCAGCTCCTCACCGTCGACTTGGATGGAACCTCTGCGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp CCAGGGCTCGGGCTTCCATCTCGGACTGAACTCCGCTaGGGGCAGGCGAGTGCCCCAGGAGTGGGAGGAAAC +
Preference number: 3 (lower is better)
Translates to: PGLGLPSRTELR*GQASAPGVGGN
Trigger: GTTTCCTCCCACTCCTGGGGCACTCGCCTGCCCCCAGCGGAGTTCAGTCCGAGATGGAAGCCCGAGCCCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 72 bp CTGAGGACCCCATCAATGACGGCGAGTGGCACCGGGTaGCAGCACTGCGGTAAGGGACCCTGCCGGGCACTC +
Preference number: 3 (lower is better)
Translates to: LRTPSMTASGTG*QHCGKGPCRAL
Trigger: GAGTGCCCGGCAGGGTCCCTTACCGCAGTGCTGTCACCCGGTGCCACTCGCCGTCATTGATGGGGTCCTCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp GAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTaGCAGGGTGTGGTGAGTGTGGGTATCCGGCTGGGC +
Preference number: 3 (lower is better)
Translates to: EVRTSTASGLLL*QGVVSVGIRLG
Trigger: GCCCAGCCGGATACCCACACTCACCACACCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CAA 90 bp ATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTGGCAGGGTAGAGCCAACCTCGGCTaGTGGGCTGGTGCCCCACAG +
Preference number: 3 (lower is better)
Translates to: IELEVRTSTASGLLLWQGRANLG*WAGAPQ
Trigger: CTGTGGGGCACCAGCCCACAAGCCGAGGTTGGCTCT...ACCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 72 bp CGCCCACCCCAGGCCACATCCCCACCCATCTGGAAGTaGAGGCCCAGGGACTCCTCCAACAGACAACGGACG +
Preference number: 3 (lower is better)
Translates to: RPPQATSPPIWK*RPRDSSNRQRT
Trigger: CGTCCGTTGTCTGTTGGAGGAGTCCCTGGGCCTTCACTTCCAGATGGGTGGGGATGTGGCCTGGGGTGGGCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 72 bp CAACCTCGGCTTGTGGGCTGGTGCCCCACAGCTACCTaGGACGGGCATCGCAGGAGTCTCTGCCACCCACTC +
Preference number: 3 (lower is better)
Translates to: QPRLVGWCPTAT*DGHRRSLCHPL
Trigger: GAGTGGGTGGCAGAGACTCCTGCGATGCCCGTCTCAGGTAGCTGTGGGGCACCAGCCCACAAGCCGAGGTTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 72 bp GGCCGGGGAGGACCAGGAAGTTTGTGGAAAGGGGCCTaGCCCAGTTCCACTGCAGGGAGGGCCGCAGAGGTT +
Preference number: 3 (lower is better)
Translates to: GRGGPGSLWKGA*PSSTAGRAAEV
Trigger: AACCTCTGCGGCCCTCCCTGCAGTGGAACTGGGTCAGGCCCCTTTCCACAAACTTCCTGGTCCTCCCCGGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp AGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTaGGACGCCTGGCCTCTGTGTCCTAGAAGGGACCCT +
Preference number: 3 (lower is better)
Translates to: SAILPVAPRLWG*DAWPLCPRRDP
Trigger: AGGGTCCCTTCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
3UTR CCA 72 bp AAACCGAGGCGATGCCACGCTTTGCTGCTACCGCCCTaGGCTGGACTGGAGGTGGGCATGCCACCCTCACAC +
Preference number: 3 (lower is better)
Translates to: KPRRCHALLLPP*AGLEVGMPPSH
Trigger: GTGTGAGGGTGGCATGCCCACCTCCAGTCCAGCCCAGGGCGGTAGCAGCAAAGCGTGGCATCGCCTCGGTTT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp AGGAGCTGGTCAGCGGCCGGTCCCCAGGTCCCAACGTaGCAGTCAACGCCAAGGGCAGCGTCTACATCGGTA +
Preference number: 3 (lower is better)
Translates to: RSWSAAGPQVPT*QSTPRAASTSV
Trigger: TACCGATGTAGACGCTGCCCTTGGCGTTGACTGCCACGTTGGGACCTGGGGACCGGCCGCTGACCAGCTCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp ACTGCAGGTACCAGCTGGGTAGTGGGGAGGCCCGCCTaGTCTCTGAGGACCCCATCAATGACGGCGAGTGGC +
Preference number: 3 (lower is better)
Translates to: TAGTSWVVGRPA*SLRTPSMTASG
Trigger: GCCACTCGCCGTCATTGATGGGGTCCTCAGAGACCAGGCGGGCCTCCCCACTACCCAGCTGGTACCTGCAGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR GCA 72 bp TCCTGCCCCAGCTCATACTTCTTGGGCCTGGATGACTaGAGGTACCAGCTGGGTAGTGGGGAGGCCCGCCTG +
Preference number: 3 (lower is better)
Translates to: SCPSSYFLGLDD*RYQLGSGEARL
Trigger: CAGGCGGGCCTCCCCACTACCCAGCTGGTACCTGCAGTCATCCAGGCCCAAGAAGTATGAGCTGGGGCAGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp AGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTaGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAAGG +
Preference number: 3 (lower is better)
Translates to: SSSAILPVAPRL*GWDAWPLCPRR
Trigger: CCTTCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
3UTR CCA 72 bp ACGCTTTGCTGCTACCGCCCTGGGCTGGACTGGAGGTaGGCATGCCACCCTCACACACACAGCTGGGCAAAG +
Preference number: 3 (lower is better)
Translates to: TLCCYRPGLDWR*ACHPHTHSWAK
Trigger: CTTTGCCCAGCTGTGTGTGTGAGGGTGGCATGCCCACCTCCAGTCCAGCCCAGGGCGGTAGCAGCAAAGCGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 72 bp GGGGGATATGACCACCCTGCCCCATCTGCAGGAGCCTaGAGATCCAGCTCAAGTGCCATCCTGCCAGTGGCC +
Preference number: 3 (lower is better)
Translates to: GGYDHPAPSAGA*RSSSSAILPVA
Trigger: GGCCACTGGCAGGATGGCACTTGAGCTGGATCTTCAGGCTCCTGCAGATGGGGCAGGGTGGTCATATCCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
3UTR GCA 72 bp TGTAAGGGAAGGCCCACCCCAACTCTTACCAGGAGCTaGTACAGGCAGAGCCCAGCACTGATAGGGCCCCGC +
Preference number: 3 (lower is better)
Translates to: CKGRPTPTLTRS*YRQSPALIGPR
Trigger: GCGGGGCCCTATCAGTGCTGGGCTCTGCCTGTAGCAGCTCCTGGTAAGAGTTGGGGTGGGCCTTCCCTTACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp GCAGTTCTCACTCCTAGGAGAGCCAACCTCGGCTTGTaGGCTGGTGCCCCACAGCTACCTGAGACGGGCATC +
Preference number: 3 (lower is better)
Translates to: AVLTPRRANLGL*AGAPQLPETGI
Trigger: GATGCCCGTCTCAGGTAGCTGTGGGGCACCAGCCCACAAGCCGAGGTTGGCTCTCCTAGGAGTGAGAACTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp GACTGGAGGTGGGCATGCCACCCTCACACACACAGCTaGGCAAAGCCACAAGGCTGGCCAGCAAGGCAGGTT +
Preference number: 3 (lower is better)
Translates to: DWRWACHPHTHS*AKPQGWPARQV
Trigger: AACCTGCCTTGCTGGCCAGCCTTGTGGCTTTGCCCAGCTGTGTGTGTGAGGGTGGCATGCCCACCTCCAGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR GCA 72 bp TCCTCCAACAGACAACGGACGGACGGATGCCGCTGGTaGTCAGGAAGAGCTAGTGCCTTAGGTGGGGGAAGG +
Preference number: 3 (lower is better)
Translates to: SSNRQRTDGCRW*SGRASALGGGR
Trigger: CCTTCCCCCACCTAAGGCACTAGCTCTTCCTGAGCACCAGCGGCATCCGTCCGTCCGTTGTCTGTTGGAGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR GCA 72 bp CCCAGGGACTCCTCCAACAGACAACGGACGGACGGATaGCGCTGGTGCTCAGGAAGAGCTAGTGCCTTAGGT +
Preference number: 3 (lower is better)
Translates to: PRDSSNRQRTDG*RWCSGRASALG
Trigger: ACCTAAGGCACTAGCTCTTCCTGAGCACCAGCGGCATCCGTCCGTCCGTTGTCTGTTGGAGGAGTCCCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR GCA 72 bp GCAGGCGAGTGCCCCAGGAGTGGGAGGAAACCTGGGTaGAGAAATGAGGAAGCTGTGTTTGTGGGGCCCGAT +
Preference number: 3 (lower is better)
Translates to: AGECPRSGRKPG*RNEEAVFVGPD
Trigger: ATCGGGCCCCACAAACACAGCTTCCTCATTTCTGCACCCAGGTTTCCTCCCACTCCTGGGGCACTCGCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp GACTCCTCCAACAGACAACGGACGGACGGATGCCGCTaGTGCTCAGGAAGAGCTAGTGCCTTAGGTGGGGGA +
Preference number: 3 (lower is better)
Translates to: DSSNRQRTDGCR*CSGRASALGGG
Trigger: TCCCCCACCTAAGGCACTAGCTCTTCCTGAGCACCAGCGGCATCCGTCCGTCCGTTGTCTGTTGGAGGAGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp GGATGGGAGTGGGCACCTCAGAAAGTCACCAGGACTTaGGGTCAGGAACAGTGGCTGGGTGGGCCCAGAACT +
Preference number: 3 (lower is better)
Translates to: GWEWAPQKVTRT*GQEQWLGGPRT
Trigger: AGTTCTGGGCCCACCCAGCCACTGTTCCTGACCCCAAGTCCTGGTGACTTTCTGAGGTGCCCACTCCCATCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp CCACAAGGCTGGCCAGCAAGGCAGGTTGGATGGGAGTaGGCACCTCAGAAAGTCACCAGGACTTGGGGTCAG +
Preference number: 3 (lower is better)
Translates to: PQGWPARQVGWE*APQKVTRTWGQ
Trigger: CTGACCCCAAGTCCTGGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGCCAGCCTTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 72 bp CAGGACGCCCCCTACCATGGGCAGAGAGGCAGGTATTaGGCTCTGTGGAGACAGAACTTGAAGCCAGGGGAG +
Preference number: 3 (lower is better)
Translates to: QDAPYHGQRGRY*ALWRQNLKPGE
Trigger: CTCCCCTGGCTTCAAGTTCTGTCTCCACAGAGCTCAATACCTGCCTCTCTGCCCATGGTAGGGGGCGTCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR GCA 72 bp AGGAAGTTTGTGGAAAGGGGCCTGACCCAGTTCCACTaGAGGGAGGGCCGCAGAGGTTCCATCCAAGTCGAC +
Preference number: 3 (lower is better)
Translates to: RKFVERGLTQFH*REGRRGSIQVD
Trigger: GTCGACTTGGATGGAACCTCTGCGGCCCTCCCTGCAGTGGAACTGGGTCAGGCCCCTTTCCACAAACTTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CAA 90 bp TTCAAGACGGGCACCTTGTCTTCAGGTAGGTCCTGGCACCTGGCCCTTCCTCTCCCCAGCTCATACTTCTaGGGCCTGGATGACTGCAGG +
Preference number: 3 (lower is better)
Translates to: FKTGTLSSGRSWHLALPLPSSYF*GLDDCR
Trigger: CCTGCAGTCATCCAGGCCCAAGAAGTATGAGCTGGG...GAGAGGAAGGGCCAGGTGCCAGGACCTACCTGAAGACAAGGTGCCCGTCTTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CAA 90 bp GGCTGGCCAGCAAGGCAGGTTGGATGGGAGTGGGCACCTCAGAAAGTCACCAGGACTCAGGATTGGGAATaGTCTTTAGTGCCGGCTGTG +
Preference number: 3 (lower is better)
Translates to: GWPARQVGWEWAPQKVTRTQDWE*SLVPAV
Trigger: CACAGCCGGCACTAAAGACAATTCCCAATCCTGAGT...CCTGGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGCCAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR GCA 72 bp ATTTTTGTAAGAAACCGAGGCGATGCCACGCTTTGCTaGTACCGCCCTGGGCTGGACTGGAGGTGGGCATGC +
Preference number: 3 (lower is better)
Translates to: IFVRNRGDATLC*YRPGLDWRWAC
Trigger: GCATGCCCACCTCCAGTCCAGCCCAGGGCGGTAGCAGCAAAGCGTGGCATCGCCTCGGTTTCTTACAAAAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CAA 90 bp GGTGAGACTGGCATTGGAAGGGCCCATGGGCCTAATGGGGAGGATGGGAATCTGGCAGAGAGGCAGGTATaGAGCTCTGTGGAGACAGAA +
Preference number: 3 (lower is better)
Translates to: GETGIGRAHGPNGEDGNLAERQV*SSVETE
Trigger: TTCTGTCTCCACAGAGCTCAATACCTGCCTCTCTGC...CAGATTCCCATCCTCCCCATTAGGCCCATGGGCCCTTCCAATGCCAGTCTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CCA 72 bp CGGGCATCGCAGGAGTCTCTGCCACCCACTCAGGATTaGGAATTGTCTTTAGTGCCGGCTGTGGAGCAAAAG +
Preference number: 3 (lower is better)
Translates to: RASQESLPPTQD*ELSLVPAVEQK
Trigger: CTTTTGCTCCACAGCCGGCACTAAAGACAATTCCCAATCCTGAGTGGGTGGCAGAGACTCCTGCGATGCCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR-3UTR CAA 90 bp ATTATTATGAATTTTTGTAAGAAACCGAGGCGATGCCACGCTTTGCTGCTACCGCCCCAGACTGTGGGGTaGGGACGCCTGGCCTCTGTG +
Preference number: 3 (lower is better)
Translates to: IIMNFCKKPRRCHALLLPPQTVG*GRLASV
Trigger: CACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGG...CGGTAGCAGCAAAGCGTGGCATCGCCTCGGTTTCTTACAAAAATTCATAATAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 72 bp GGGAAAGAAAGAGCTTGGGAAACAGGGACAGACTTCTaGGTCTGGAGTCTCGATATCAGAGGGAGGGGACTC +
Preference number: 3 (lower is better)
Translates to: GKERAWETGTDF*VWSLDIRGRGL
Trigger: GAGTCCCCTCCCTCTGATATCGAGACTCCAGACTCAGAAGTCTGTCCCTGTTTCCCAAGCTCTTTCTTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 72 bp TGTGTCCTAGAAGGGACCCTCCTGTGGTCTTTGTCTTaGTTTTTCTTAATAAACGGTGCTATCCCCGCCAGG +
Preference number: 3 (lower is better)
Translates to: CVLEGTLLWSLS*FFLINGAIPAR
Trigger: CCTGGCGGGGATAGCACCGTTTATTAAGAAAAATCAAGACAAAGACCACAGGAGGGTCCCTTCTAGGACACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
3UTR GCA 72 bp AATATTATTATGAATTTTTGTAAGAAACCGAGGCGATaGCACGCTTTGCTGCTACCGCCCTGGGCTGGACTG +
Preference number: 3 (lower is better)
Translates to: NIIMNFCKKPRR*HALLLPPWAGL
Trigger: CAGTCCAGCCCAGGGCGGTAGCAGCAAAGCGTGGCATCGCCTCGGTTTCTTACAAAAATTCATAATAATATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR GCA 72 bp AAAGTTGCAGGTCCTACCACTGCTACTTTGGTTTCTTaGCTACATCTCATTGAAAGAACTGCTCAATTTCAG +
Preference number: 3 (lower is better)
Translates to: KVAGPTTATLVS*LHLIERTAQFQ
Trigger: CTGAAATTGAGCAGTTCTTTCAATGAGATGTAGGCAAGAAACCAAAGTAGCAGTGGTAGGACCTGCAACTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR TCA 72 bp ATCTCATTGAAAGAACTGCTCAATTTCAGTGAGAAGTaGGTGAAATTGAGGTGTAATGCTTTCCCATCCAAG +
Preference number: 3 (lower is better)
Translates to: ISLKELLNFSEK*VKLRCNAFPSK
Trigger: CTTGGATGGGAAAGCATTACACCTCAATTTCACTCACTTCTCACTGAAATTGAGCAGTTCTTTCAATGAGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp TTGGGCCTGGATGACTGCAGGTACCAGCTGGGTAGTGGGGAGGCCCGCCTGGTCGGCAGGCGGAGCCCCTaGCGTGGCCACGCTGACCGG +
Preference number: 4 (lower is better)
Translates to: LGLDDCRYQLGSGEARLVGRRSP*RGHADR
Trigger: CCGGTCAGCGTGGCCACGTCAGGGGCTCCGCCTGCC...GACCAGGCGGGCCTCCCCACTACCCAGCTGGTACCTGCAGTCATCCAGGCCCAA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp GCCCGAGGTGCCCGAGACCATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCTGCGCGATGCGGCGTaGGAGCGCAGCAGCAGCCCG +
Preference number: 4 (lower is better)
Translates to: ARGARDHRAGGSDQHSQWLRDAA*ERSSSP
Trigger: CGGGCTGCTGCTGCGCTCGCACGCCGCATCGCGCAG...CCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGATGGTCTCGGGCACCTCGGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp CTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGACTGCGCGATGCGGCGTaGGAGCGCAGCAGCAGCCCG +
Preference number: 4 (lower is better)
Translates to: LPVAPRLWGWDAWPLCPRLRDAA*ERSSSP
Trigger: CGGGCTGCTGCTGCGCTCGCACGCCGCATCGCGCAG...TCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp CAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTCCCCCTGCCACGTCTaGCCGCACAGTTCCGCCAGG +
Preference number: 4 (lower is better)
Translates to: QVPSCQWPPDCGVGTPGLSPCHV*PHSSAR
Trigger: CCTGGCGGAACTGTGCGGGCAGACGTGGCAGGGGGA...GAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp CCACTGTCCCCCTACCCACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTGTTCAGGCCGCACAGTaGGGACCCCAGGGGCCGGGG +
Preference number: 4 (lower is better)
Translates to: PLSPYPPMEPPDRAGWPVVQAAQ*GPQGPG
Trigger: CCCCGGCCCCTGGGGTCCCCACTGTGCGGCCTGAAC...AACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTGGGTAGGGGGACAGTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCCGCCCTGGGCTGGACTaGAGGTGGGCATGCCACCCT +
Preference number: 4 (lower is better)
Translates to: LKCHPASGPQTVGLGRLARPGLD*RWACHP
Trigger: AGGGTGGCATGCCCACCTCCAGTCCAGCCCAGGGCG...GGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCGCTACCGCCCTGGGCTaGACTGGAGGTGGGCATGCC +
Preference number: 4 (lower is better)
Translates to: LKCHPASGPQTVGLGRLAATALG*TGGGHA
Trigger: GGCATGCCCACCTCCAGTCCAGCCCAGGGCGGTAGC...GGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCCGGACTGAACTCCGCTaGGGGCAGGCGAGTGCCCCA +
Preference number: 4 (lower is better)
Translates to: QVPSCQWPPDCGVGTPGLRTELR*GQASAP
Trigger: TGGGGCACTCGCCTGCCCCCAGCGGAGTTCAGTCCG...GAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp CTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGATGGGGCCCAGCGTTCTaGAGTGGGGCAGGACGCCCC +
Preference number: 4 (lower is better)
Translates to: LPVAPRLWGWDAWPLCPRWGPAF*SGAGRP
Trigger: GGGGCGTCCTGCCCCACTCCAGAACGCTGGGCCCCA...TCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp GCCCGAGGTGCCCGAGACCATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCATCCAAGTCGACGGTaGGGAGCTGGTCAGCGGCCG +
Preference number: 4 (lower is better)
Translates to: ARGARDHRAGGSDQHSQWHPSRR*GAGQRP
Trigger: CGGCCGCTGACCAGCTCCTCACCGTCGACTTGGATG...CCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGATGGTCTCGGGCACCTCGGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp AGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGTCCCCCTGCCACGTCTaGCCGCACAGTTCCGCCAGG +
Preference number: 4 (lower is better)
Translates to: SSSAILPVAPRLWGWDAWSPCHV*PHSSAR
Trigger: CCTGGCGGAACTGTGCGGGCAGACGTGGCAGGGGGA...CCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp AGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCCCTCGTAGGCACCTaGCTGCCCCACACGGACTCC +
Preference number: 4 (lower is better)
Translates to: SSSAILPVAPRLWGWDAWPLVGT*LPHTDS
Trigger: GGAGTCCGTGTGGGGCAGGCAGGTGCCTACGAGGGG...CCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp CTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCCTGGGGGCAGGCGAGTaGCCCAGGAGTGGGAGGAAA +
Preference number: 4 (lower is better)
Translates to: LKCHPASGPQTVGLGRLALGAGE*PRSGRK
Trigger: TTTCCTCCCACTCCTGGGGCACTCGCCTGCCCCCAG...GGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp TTGGGCCTGGATGACTGCAGGTACCAGCTGGGTAGTGGGGAGGCCCGCCTGGTCTGCGGTAAGGGACCCTaGCGGGCACTCGGGATGGGG +
Preference number: 4 (lower is better)
Translates to: LGLDDCRYQLGSGEARLVCGKGP*RALGMG
Trigger: CCCCATCCCGAGTGCCCGGCAGGGTCCCTTACCGCA...GACCAGGCGGGCCTCCCCACTACCCAGCTGGTACCTGCAGTCATCCAGGCCCAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCGGGGTCCCTGCCTGCTaGGGAACTCCTCTCAGCTGC +
Preference number: 4 (lower is better)
Translates to: QVPSCQWPPDCGVGTPGLGVPAC*GTPLSC
Trigger: GCAGCTGAGAGGAGTTCCCCAGCAGGCAGGGACCCC...GAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp CTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAGTGGCCCCCAGACTGTaGGGTTGGGACGCCTGGCCT +
Preference number: 4 (lower is better)
Translates to: LPVAPRLWGWDAWPLCPRVAPRL*GWDAWP
Trigger: AGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCAC...TCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp CAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCCCCTGGCACCTCCTCTaGCAGACTCCCCCTCCTACC +
Preference number: 4 (lower is better)
Translates to: QVPSCQWPPDCGVGTPGLPWHLL*QTPPPT
Trigger: GGTAGGAGGGGGAGTCTGCCAGAGGAGGTGCCAGGG...GAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCGGAACAGTGGCTGGGTaGGCCCAGAACTGCCCCCAC +
Preference number: 4 (lower is better)
Translates to: LKCHPASGPQTVGLGRLAGTVAG*AQNCPH
Trigger: GTGGGGGCAGTTCTGGGCCCACCCAGCCACTGTTCC...GGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CACCCAGCCCCTGGCACCTCCTCTGGCAGACTCCCCCTCCTACCACGTCCTCCTTTGCTGCTACCGCCCTaGGCTGGACTGGAGGTGGGC +
Preference number: 4 (lower is better)
Translates to: HPAPGTSSGRLPLLPRPPLLLPP*AGLEVG
Trigger: GCCCACCTCCAGTCCAGCCCAGGGCGGTAGCAGCAA...AGGAGGACGTGGTAGGAGGGGGAGTCTGCCAGAGGAGGTGCCAGGGGCTGGGTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp AGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGTGTTGGCAGCCCCCGTaGGTCCCCAGGGACTGCAGG +
Preference number: 4 (lower is better)
Translates to: SSSAILPVAPRLWGWDAWCWQPP*VPRDCR
Trigger: CCTGCAGTCCCTGGGGACCCACGGGGGCTGCCAACA...CCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp CTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTGCCCCACAGCTACCTaGGACGGGCATCGCAGGAGT +
Preference number: 4 (lower is better)
Translates to: LKCHPASGPQTVGLGRLACPTAT*DGHRRS
Trigger: ACTCCTGCGATGCCCGTCTCAGGTAGCTGTGGGGCA...GGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp AGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGGTAGAACCTGCGCGATaGGGCGTGCGAGCGCAGCAG +
Preference number: 4 (lower is better)
Translates to: SSSAILPVAPRLWGWDAWVEPAR*GVRAQQ
Trigger: CTGCTGCGCTCGCACGCCGCATCGCGCAGGTTCTAC...CCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp GCCCGAGGTGCCCGAGACCATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCACGAAGTAGAACCTaGGCGATGCGGCGTGCGAGC +
Preference number: 4 (lower is better)
Translates to: ARGARDHRAGGSDQHSQWPRSRT*AMRRAS
Trigger: GCTCGCACGCCGCATCGCGCAGGTTCTACTTCGTGG...CCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGATGGTCTCGGGCACCTCGGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp CTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCCCACGAAGTAGAACCTaGGCGATGCGGCGTGCGAGC +
Preference number: 4 (lower is better)
Translates to: LKCHPASGPQTVGLGRLAPRSRT*AMRRAS
Trigger: GCTCGCACGCCGCATCGCGCAGGTTCTACTTCGTGG...GGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp CACCCAGCCCCTGGCACCTCCTCTGGCAGACTCCCCCTCCTACCACGTCCTCCTCAGCAGGGAGGCTGGTaGGACACAAGGAGAAGGGGG +
Preference number: 4 (lower is better)
Translates to: HPAPGTSSGRLPLLPRPPQQGGW*DTRRRG
Trigger: CCCCCTTCTCCTTGTGTCCCACCAGCCTCCCTGCTG...AGGAGGACGTGGTAGGAGGGGGAGTCTGCCAGAGGAGGTGCCAGGGGCTGGGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp TGCAGGAGCCTGAAGATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTTCAGGCCGCACAGTaGGGACCCCAGGGGCCGGGG +
Preference number: 4 (lower is better)
Translates to: CRSLKIQLKCHPASGPQTVQAAQ*GPQGPG
Trigger: CCCCGGCCCCTGGGGTCCCCACTGTGCGGCCTGAAC...AGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGATCTTCAGGCTCCTGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp CTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGACTGCGTCTTGTCTCGTaGGGTCCCTGCCTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: LPVAPRLWGWDAWPLCPRLRLVS*GPCLLG
Trigger: CCCCAGCAGGCAGGGACCCCACGAGACAAGACGCAG...TCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp CATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCCCCAGACTGTGGGGTTaGGACGCCTGGCCTCTGTGT +
Preference number: 4 (lower is better)
Translates to: HPASGPQTVGLGRLASVSPRLWG*DAWPLC
Trigger: ACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGG...GGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp CTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCCCCCCTACCCACCGATaGAGCCCCCAGATAGAGCTG +
Preference number: 4 (lower is better)
Translates to: LKCHPASGPQTVGLGRLAPPTHR*SPQIEL
Trigger: CAGCTCTATCTGGGGGCTCCATCGGTGGGTAGGGGG...GGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAG
67% GC, longest homopolymer 7 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCGGGCTGGACTGGAGGTaGGCATGCCACCCTCACACA +
Preference number: 4 (lower is better)
Translates to: HPASGPQTVGLGRLASVSGLDWR*ACHPHT
Trigger: TGTGTGAGGGTGGCATGCCCACCTCCAGTCCAGCCC...GGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTTCTGCAGCCCTTGGGCGCCTTCCTCGCCTCCTaGGCTGCTGGAGCCCACAGG +
Preference number: 4 (lower is better)
Translates to: HRWSPQIELGGLFLQPLGAFLAS*AAGAHR
Trigger: CCTGTGGGCTCCAGCAGCCCAGGAGGCGAGGAAGGC...GCCCAAGGGCTGCAGAAACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTTCTGCAGCCCTTGGGCTCGACGGTGAGGAGCTaGTCAGCGGCCGGTCCCCAG +
Preference number: 4 (lower is better)
Translates to: HRWSPQIELGGLFLQPLGSTVRS*SAAGPQ
Trigger: CTGGGGACCGGCCGCTGACCAGCTCCTCACCGTCGA...GCCCAAGGGCTGCAGAAACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp ATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTGGCAGGGTGAGGGGACTCTGTCGTaGGGCCGGGGAGGACCAGGA +
Preference number: 4 (lower is better)
Translates to: IELEVRTSTASGLLLWQGEGTLS*GRGGPG
Trigger: TCCTGGTCCTCCCCGGCCCCACGACAGAGTCCCCTC...ACCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CCACTGTCCCCCTACCCACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTGCCGGGCACTCGGGATaGGGCCCAGCGTTCTGGAGT +
Preference number: 4 (lower is better)
Translates to: PLSPYPPMEPPDRAGWPVAGHSG*GPAFWS
Trigger: ACTCCAGAACGCTGGGCCCCATCCCGAGTGCCCGGC...AACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTGGGTAGGGGGACAGTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp TCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTGACCCTGTGCTTCCCTaGCAGGAGGTGGGAGAGGCC +
Preference number: 4 (lower is better)
Translates to: SSAILPVAPRLWGWDAWPDPVLP*QEVGEA
Trigger: GGCCTCTCCCACCTCCTGCCAGGGAAGCACAGGGTC...AGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CACCCAGCCCCTGGCACCTCCTCTGGCAGACTCCCCCTCCTACCACGTCCTCCTCTCCCTGAATTCTGTTaGCAGCCCCCGTGGGTCCCC +
Preference number: 4 (lower is better)
Translates to: HPAPGTSSGRLPLLPRPPLPEFC*QPPWVP
Trigger: GGGGACCCACGGGGGCTGCCAACAGAATTCAGGGAG...AGGAGGACGTGGTAGGAGGGGGAGTCTGCCAGAGGAGGTGCCAGGGGCTGGGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp TGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAAGGGACCCCACCCATCTGGAAGTaGAGGCCCAGGGACTCCTCC +
Preference number: 4 (lower is better)
Translates to: WPPDCGVGTPGLCVLEGTPPIWK*RPRDSS
Trigger: GGAGGAGTCCCTGGGCCTTCACTTCCAGATGGGTGG...GGTCCCTTCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp ATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCGCTTCCATCTCGGACTaGACTCCGCTGGGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: IQLKCHPASGPQTVGLGRASISD*TPLGAG
Trigger: GCCTGCCCCCAGCGGAGTTCAGTCCGAGATGGAAGC...GCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp CACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTTCTGCAGCCCTTGGGCGCGAGTGGCACCGGGTaGCAGCACTGCGGTAAGGGA +
Preference number: 4 (lower is better)
Translates to: HRWSPQIELGGLFLQPLGASGTG*QHCGKG
Trigger: TCCCTTACCGCAGTGCTGTCACCCGGTGCCACTCGC...GCCCAAGGGCTGCAGAAACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp TTGGGCCTGGATGACTGCAGGTACCAGCTGGGTAGTGGGGAGGCCCGCCTGGTCTCTGGCAGGGTGTGGTaGGTGTGGGTATCCGGCTGG +
Preference number: 4 (lower is better)
Translates to: LGLDDCRYQLGSGEARLVSGRVW*VWVSGW
Trigger: CCAGCCGGATACCCACACTCACCACACCCTGCCAGA...GACCAGGCGGGCCTCCCCACTACCCAGCTGGTACCTGCAGTCATCCAGGCCCAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp CTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGACCTCCATCCAGGCTCTaGTGTGCCCAGCAATGGGGC +
Preference number: 4 (lower is better)
Translates to: LPVAPRLWGWDAWPLCPRPPSRL*CAQQWG
Trigger: GCCCCATTGCTGGGCACAGCAGAGCCTGGATGGAGG...TCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp ATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCGTGGGGTCCCTGCCTaGTGGGGAACTCCTCTCAGC +
Preference number: 4 (lower is better)
Translates to: IQLKCHPASGPQTVGLGRRGVPA*WGTPLS
Trigger: GCTGAGAGGAGTTCCCCAGCAGGCAGGGACCCCACG...GCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp ATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCTCAAGAACCTGGTGCTaGACTCGGCCCGACCCGGCG +
Preference number: 4 (lower is better)
Translates to: IQLKCHPASGPQTVGLGRSRTWC*TRPDPA
Trigger: CGCCGGGTCGGGCCGAGTGCAGCACCAGGTTCTTGA...GCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp TTGGGCCTGGATGACTGCAGGTACCAGCTGGGTAGTGGGGAGGCCCGCCTGGTCCTGACCCAGTTCCACTaGAGGGAGGGCCGCAGAGGT +
Preference number: 4 (lower is better)
Translates to: LGLDDCRYQLGSGEARLVLTQFH*REGRRG
Trigger: ACCTCTGCGGCCCTCCCTGCAGTGGAACTGGGTCAG...GACCAGGCGGGCCTCCCCACTACCCAGCTGGTACCTGCAGTCATCCAGGCCCAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp TCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTACCCCAGAGACCCTGTaGTTCCCTGGCAGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: SSAILPVAPRLWGWDAWPTPETL*FPGRRW
Trigger: CCACCTCCTGCCAGGGAAGCACAGGGTCTCTGGGGT...AGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp TTGGGCCTGGATGACTGCAGGTACCAGCTGGGTAGTGGGGAGGCCCGCCTGGTCGGGGAGACTGGAGTATaGGGCCTGGTCAGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: LGLDDCRYQLGSGEARLVGETGV*GLVRPA
Trigger: TGCTGGCCTGACCAGGCCCCATACTCCAGTCTCCCC...GACCAGGCGGGCCTCCCCACTACCCAGCTGGTACCTGCAGTCATCCAGGCCCAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCGGTCTCTGGGGAGACTaGAGTATGGGGCCTGGTCAG +
Preference number: 4 (lower is better)
Translates to: LKCHPASGPQTVGLGRLAGLWGD*SMGPGQ
Trigger: CTGACCAGGCCCCATACTCCAGTCTCCCCAGAGACC...GGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp GGCTGGCCAGCAAGGCAGGTTGGATGGGAGTGGGCACCTCAGAAAGTCACCAGGAAGTCCACGCGGGGCTaGCGGCCTCTCGTGACCAGG +
Preference number: 4 (lower is better)
Translates to: GWPARQVGWEWAPQKVTRKSTRG*RPLVTR
Trigger: CCTGGTCACGAGAGGCCGCCAGCCCCGCGTGGACTT...CCTGGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGCCAGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp ATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTGGCAGGGTCTGCGTCTTGTCTCGTaGGGTCCCTGCCTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: IELEVRTSTASGLLLWQGLRLVS*GPCLLG
Trigger: CCCCAGCAGGCAGGGACCCCACGAGACAAGACGCAG...ACCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTGGGGTTGGGACGCCTaGCCTCTGTGTCCTAGAAGG +
Preference number: 4 (lower is better)
Translates to: LKCHPASGPQTVGLGRLAWGWDA*PLCPRR
Trigger: CCTTCTAGGACACAGAGGCCAGGCGTCCCAACCCCA...GGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp GGCTGGCCAGCAAGGCAGGTTGGATGGGAGTGGGCACCTCAGAAAGTCACCAGGGTGGCCCCCAGACTGTaGGGTTGGGACGCCTGGCCT +
Preference number: 4 (lower is better)
Translates to: GWPARQVGWEWAPQKVTRVAPRL*GWDAWP
Trigger: AGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCAC...CCTGGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGCCAGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAGTGCCATCCTGCCAGTaGCCCCCAGACTGTGGGGTT +
Preference number: 4 (lower is better)
Translates to: LPVAPRLWGWDAWPLCPRVPSCQ*PPDCGV
Trigger: AACCCCACAGTCTGGGGGCCACTGGCAGGATGGCAC...TCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp TGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAAGGGACCGTGCCATCCTGCCAGTaGCCCCCAGACTGTGGGGTT +
Preference number: 4 (lower is better)
Translates to: WPPDCGVGTPGLCVLEGTVPSCQ*PPDCGV
Trigger: AACCCCACAGTCTGGGGGCCACTGGCAGGATGGCAC...GGTCCCTTCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp GGCTGGCCAGCAAGGCAGGTTGGATGGGAGTGGGCACCTCAGAAAGTCACCAGGAAGGCAGCTCACCCCTaGGCAGGCGGTCCCCATCCC +
Preference number: 4 (lower is better)
Translates to: GWPARQVGWEWAPQKVTRKAAHP*AGGPHP
Trigger: GGGATGGGGACCGCCTGCCCAGGGGTGAGCTGCCTT...CCTGGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGCCAGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp TTGGGCCTGGATGACTGCAGGTACCAGCTGGGTAGTGGGGAGGCCCGCCTGGTCGTCAGGAACAGTGGCTaGGTGGGCCCAGAACTGCCC +
Preference number: 4 (lower is better)
Translates to: LGLDDCRYQLGSGEARLVVRNSG*VGPELP
Trigger: GGGCAGTTCTGGGCCCACCCAGCCACTGTTCCTGAC...GACCAGGCGGGCCTCCCCACTACCCAGCTGGTACCTGCAGTCATCCAGGCCCAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCGCTGTGTCAAGAACCTaGTGCTGCACTCGGCCCGAC +
Preference number: 4 (lower is better)
Translates to: LKCHPASGPQTVGLGRLAAVSRT*CCTRPD
Trigger: GTCGGGCCGAGTGCAGCACCAGGTTCTTGACACAGC...GGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CCACTGTCCCCCTACCCACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTGTGGGGAGGCCCGCCTaGTCTCTGAGGACCCCATCA +
Preference number: 4 (lower is better)
Translates to: PLSPYPPMEPPDRAGWPVVGRPA*SLRTPS
Trigger: TGATGGGGTCCTCAGAGACCAGGCGGGCCTCCCCAC...AACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTGGGTAGGGGGACAGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp ATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCGTGTGGGTATCCGGCTaGGCTCTTGGGGCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: IQLKCHPASGPQTVGLGRVWVSG*ALGAPG
Trigger: CCCAGGAGCCCCAAGAGCCCAGCCGGATACCCACAC...GCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CCACTGTCCCCCTACCCACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTGACCAGCACAGCCAGTaGCCTCCTGCTCTGGCAGGG +
Preference number: 4 (lower is better)
Translates to: PLSPYPPMEPPDRAGWPVDQHSQ*PPALAG
Trigger: CCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTC...AACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTGGGTAGGGGGACAGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp CATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCCCAGACGGAAAGAGGTaGCTTCGCCCACGAAGTCCA +
Preference number: 4 (lower is better)
Translates to: HPASGPQTVGLGRLASVSPDGKR*LRPRSP
Trigger: TGGACTTCGTGGGCGAAGTCACCTCTTTCCGTCTGG...GGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR TCA 90 bp CATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCCCATCTGCAGGAGCCTaGAGATCCAGCTCAAGTGCC +
Preference number: 4 (lower is better)
Translates to: HPASGPQTVGLGRLASVSPSAGA*RSSSSA
Trigger: GGCACTTGAGCTGGATCTTCAGGCTCCTGCAGATGG...GGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR TCA 90 bp TCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCGGCAGGACTCACGACTaGGAGAGAGAGGAGGGGGAT +
Preference number: 4 (lower is better)
Translates to: SSSSAILPVAPRLWGWDAGRTHD*EREEGD
Trigger: ATCCCCCTCCTCTCTCTCTCAGTCGTGAGTCCTGCC...GGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp GGCTGGCCAGCAAGGCAGGTTGGATGGGAGTGGGCACCTCAGAAAGTCACCAGGCTGACGTGGCCACGCTaGCCGGGGGCAGATTCTCCT +
Preference number: 4 (lower is better)
Translates to: GWPARQVGWEWAPQKVTRLTWPR*PGADSP
Trigger: AGGAGAATCTGCCCCCGGTCAGCGTGGCCACGTCAG...CCTGGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGCCAGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp AGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGATCCAGGCTCTGCTGTaGCCAGCAATGGGGCAGACC +
Preference number: 4 (lower is better)
Translates to: SSSAILPVAPRLWGWDAWIQALL*PAMGQT
Trigger: GGTCTGCCCCATTGCTGGGCACAGCAGAGCCTGGAT...CCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp CCACTGTCCCCCTACCCACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTTGCAGTCAGGGCGGCTaGCCCCAGCAAGAGCAACCT +
Preference number: 4 (lower is better)
Translates to: PLSPYPPMEPPDRAGWPVCSQGG*PQQEQP
Trigger: AGGTTGCTCTTGCTGGGGGCAGCCGCCCTGACTGCA...AACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTGGGTAGGGGGACAGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp TCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGTCTCCAAAGCAGTTaGAGTCAGGGCGGCTGCCCC +
Preference number: 4 (lower is better)
Translates to: SSSSAILPVAPRLWGWDACLQSS*SQGGCP
Trigger: GGGGCAGCCGCCCTGACTGCAACTGCTTTGGAGACA...GGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp TGCAGGAGCCTGAAGATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTAGCAGCCCGTCCCCCTaGCACGTCTGCCCGCACAGT +
Preference number: 4 (lower is better)
Translates to: CRSLKIQLKCHPASGPQTSSPSP*HVCPHS
Trigger: ACTGTGCGGGCAGACGTGGCAGGGGGACGGGCTGCT...AGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGATCTTCAGGCTCCTGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp CATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCAAAGGGTCCGGAGGATaGCACAGGCACCGGGATGTT +
Preference number: 4 (lower is better)
Translates to: HPASGPQTVGLGRLASVSKGSGG*HRHRDV
Trigger: AACATCCCGGTGCCTGTGGCATCCTCCGGACCCTTT...GGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp TGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAAGGGACCCGCCACAGTTGTCCATaGCCCAGGGGTCACACACGA +
Preference number: 4 (lower is better)
Translates to: WPPDCGVGTPGLCVLEGTRHSCP*PRGHTR
Trigger: TCGTGTGTGACCCCTGGGGCATGGACAACTGTGGCG...GGTCCCTTCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp TCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCGCCACAGTTGTCCATaGCCCAGGGGTCACACACGA +
Preference number: 4 (lower is better)
Translates to: SSAILPVAPRLWGWDAWPRHSCP*PRGHTR
Trigger: TCGTGTGTGACCCCTGGGGCATGGACAACTGTGGCG...AGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp CTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCAATCCAGAGGGATCCTaGAGACCCGAGAGCTGGGGA +
Preference number: 4 (lower is better)
Translates to: LKCHPASGPQTVGLGRLANPEGS*RPESWG
Trigger: TCCCCAGCTCTCGGGTCTGCAGGATCCCTCTGGATT...GGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp TCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCGACGGATGCCGCTGGTaGTCAGGAAGAGCTAGTGCC +
Preference number: 4 (lower is better)
Translates to: SSSSAILPVAPRLWGWDADGCRW*SGRASA
Trigger: GGCACTAGCTCTTCCTGAGCACCAGCGGCATCCGTC...GGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp TCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCCAACGGACGGACGGATaGCGCTGGTGCTCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: SSSSAILPVAPRLWGWDAQRTDG*RWCSGR
Trigger: TCTTCCTGAGCACCAGCGGCATCCGTCCGTCCGTTG...GGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp ATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCGATGCCACGCTTTGCTaGTACCGCCCTGGGCTGGAC +
Preference number: 4 (lower is better)
Translates to: IQLKCHPASGPQTVGLGRDATLC*YRPGLD
Trigger: GTCCAGCCCAGGGCGGTAGCAGCAAAGCGTGGCATC...GCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp GGCTGGCCAGCAAGGCAGGTTGGATGGGAGTGGGCACCTCAGAAAGTCACCAGGTCTTCCTCCGCAGCCTaGCCGAGGTGCCCGAGACCA +
Preference number: 4 (lower is better)
Translates to: GWPARQVGWEWAPQKVTRSSSAA*PRCPRP
Trigger: TGGTCTCGGGCACCTCGGGCAGGCTGCGGAGGAAGA...CCTGGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGCCAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAGGTCTCTGGGGAGACTaGAGTATGGGGCCTGGTCAG +
Preference number: 4 (lower is better)
Translates to: LPVAPRLWGWDAWPLCPRGLWGD*SMGPGQ
Trigger: CTGACCAGGCCCCATACTCCAGTCTCCCCAGAGACC...TCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp CAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTCAGCTTGGGGTCTCTaGGGAGACTGGAGTATGGGG +
Preference number: 4 (lower is better)
Translates to: QVPSCQWPPDCGVGTPGLSAWGL*GDWSMG
Trigger: CCCCATACTCCAGTCTCCCCAGAGACCCCAAGCTGA...GAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp TCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTAGGAAGAAGCGGAACTaGAAGCGGATCCGGTCGCCG +
Preference number: 4 (lower is better)
Translates to: SSAILPVAPRLWGWDAWPRKKRN*KRIRSP
Trigger: CGGCGACCGGATCCGCTTCCAGTTCCGCTTCTTCCT...AGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp CTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTACTTCCTGTCTaGCTGGGCACCGGAGAGGGA +
Preference number: 4 (lower is better)
Translates to: LKCHPASGPQTVGLGRLASVLPV*LGTGEG
Trigger: TCCCTCTCCGGTGCCCAGCCAGACAGGAAGTACAGA...GGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp CTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCACGGACGGATGCCGCTaGTGCTCAGGAAGAGCTAGT +
Preference number: 4 (lower is better)
Translates to: LKCHPASGPQTVGLGRLATDGCR*CSGRAS
Trigger: ACTAGCTCTTCCTGAGCACCAGCGGCATCCGTCCGT...GGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp TGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAAGGGACCGCCAGCAAGGCAGGTTaGATGGGAGTGGGCACCTCA +
Preference number: 4 (lower is better)
Translates to: WPPDCGVGTPGLCVLEGTASKAG*MGVGTS
Trigger: TGAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGC...GGTCCCTTCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CACCCAGCCCCTGGCACCTCCTCTGGCAGACTCCCCCTCCTACCACGTCCTCCTCCTCACACACACAGCTaGGCAAAGCCACAAGGCTGG +
Preference number: 4 (lower is better)
Translates to: HPAPGTSSGRLPLLPRPPPHTHS*AKPQGW
Trigger: CCAGCCTTGTGGCTTTGCCCAGCTGTGTGTGTGAGG...AGGAGGACGTGGTAGGAGGGGGAGTCTGCCAGAGGAGGTGCCAGGGGCTGGGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CCACTGTCCCCCTACCCACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTCCCCAGGTCCCAACGTaGCAGTCAACGCCAAGGGCA +
Preference number: 4 (lower is better)
Translates to: PLSPYPPMEPPDRAGWPVPQVPT*QSTPRA
Trigger: TGCCCTTGGCGTTGACTGCCACGTTGGGACCTGGGG...AACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTGGGTAGGGGGACAGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp TTGGGCCTGGATGACTGCAGGTACCAGCTGGGTAGTGGGGAGGCCCGCCTGGTCCCTAGTCCTGCATGTTaGCGTGGAGGTGGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: LGLDDCRYQLGSGEARLVPSPAC*RGGGGQ
Trigger: CTGACCCCCACCTCCACGCCAACATGCAGGACTAGG...GACCAGGCGGGCCTCCCCACTACCCAGCTGGTACCTGCAGTCATCCAGGCCCAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp AGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCAGACGGAAAGAGGTaGCTTCGCCCACGAAGTCCA +
Preference number: 4 (lower is better)
Translates to: SSSAILPVAPRLWGWDAWPDGKR*LRPRSP
Trigger: TGGACTTCGTGGGCGAAGTCACCTCTTTCCGTCTGG...CCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR TCA 90 bp CTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAGTCACACACGAGGCTTaGGGGGATGCACCTGCCATT +
Preference number: 4 (lower is better)
Translates to: LPVAPRLWGWDAWPLCPRVTHEA*GDAPAI
Trigger: AATGGCAGGTGCATCCCCTCAAGCCTCGTGTGTGAC...TCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR TCA 90 bp ATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCTTGTGGAAAGGGGCCTaGCCCAGTTCCACTGCAGGG +
Preference number: 4 (lower is better)
Translates to: IQLKCHPASGPQTVGLGRLWKGA*PSSTAG
Trigger: CCCTGCAGTGGAACTGGGTCAGGCCCCTTTCCACAA...GCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp TGCAGGAGCCTGAAGATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTAGAACCTGCGCGATaGGGCGTGCGAGCGCAGCAG +
Preference number: 4 (lower is better)
Translates to: CRSLKIQLKCHPASGPQTVEPAR*GVRAQQ
Trigger: CTGCTGCGCTCGCACGCCGCATCGCGCAGGTTCTAC...AGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGATCTTCAGGCTCCTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp CTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAAAAGGGTCCGGAGGATaGCACAGGCACCGGGATGTT +
Preference number: 4 (lower is better)
Translates to: LPVAPRLWGWDAWPLCPRKGSGG*HRHRDV
Trigger: AACATCCCGGTGCCTGTGGCATCCTCCGGACCCTTT...TCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp CATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTTGAGGGGATGCACCTaGCATTCTGGCAGCGGAAGT +
Preference number: 4 (lower is better)
Translates to: HPASGPQTVGLGRLASVSLRGCT*HSGSGS
Trigger: ACTTCCGCTGCCAGAATGGCAGGTGCATCCCCTCAA...GGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp ATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCGAGGCTTGAGGGGATaGACCTGCCATTCTGGCAGC +
Preference number: 4 (lower is better)
Translates to: IQLKCHPASGPQTVGLGRRGLRG*TCHSGS
Trigger: GCTGCCAGAATGGCAGGTGCATCCCCTCAAGCCTCG...GCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp CTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAGGAGCCTTCCAAAGCTaGGTCTTGTCTCGTGGGGTC +
Preference number: 4 (lower is better)
Translates to: LPVAPRLWGWDAWPLCPRGAFQS*VLSRGV
Trigger: GACCCCACGAGACAAGACGCAGCTTTGGAAGGCTCC...TCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp TCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTAAGATCCAGCTCAAGTaGCATCCTGCCAGTGGCCCC +
Preference number: 4 (lower is better)
Translates to: SSAILPVAPRLWGWDAWPKIQLK*HPASGP
Trigger: GGGGCCACTGGCAGGATGGCACTTGAGCTGGATCTT...AGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp CTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAAAGATCCAGCTCAAGTaGCATCCTGCCAGTGGCCCC +
Preference number: 4 (lower is better)
Translates to: LPVAPRLWGWDAWPLCPRKIQLK*HPASGP
Trigger: GGGGCCACTGGCAGGATGGCACTTGAGCTGGATCTT...TCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp GGTGAGACTGGCATTGGAAGGGCCCATGGGCCTAATGGGGAGGATGGGAATCTGGGGTGGGCCCAGAACTaGCCCCACTGTCCCCCTACC +
Preference number: 4 (lower is better)
Translates to: GETGIGRAHGPNGEDGNLGWAQN*PHCPPT
Trigger: GGTAGGGGGACAGTGGGGGCAGTTCTGGGCCCACCC...CAGATTCCCATCCTCCCCATTAGGCCCATGGGCCCTTCCAATGCCAGTCTCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTGCTGTGCCCAGCAATaGGGCAGACCCACAGAATCT +
Preference number: 4 (lower is better)
Translates to: HPASGPQTVGLGRLASVSCCAQQ*GRPTES
Trigger: AGATTCTGTGGGTCTGCCCCATTGCTGGGCACAGCA...GGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp TGCAGGAGCCTGAAGATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGGGGTCCCTGCCTGCTaGGGAACTCCTCTCAGCTGC +
Preference number: 4 (lower is better)
Translates to: CRSLKIQLKCHPASGPQTGVPAC*GTPLSC
Trigger: GCAGCTGAGAGGAGTTCCCCAGCAGGCAGGGACCCC...AGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGATCTTCAGGCTCCTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp CATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCGAGGGCTTCACTCAGTaGAGCCTTCCAAAGCTGCGT +
Preference number: 4 (lower is better)
Translates to: HPASGPQTVGLGRLASVSEGFTQ*SLPKLR
Trigger: ACGCAGCTTTGGAAGGCTCCACTGAGTGAAGCCCTC...GGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp GGCTGGCCAGCAAGGCAGGTTGGATGGGAGTGGGCACCTCAGAAAGTCACCAGGGCCAACCTCGGCTTGTaGGCTGGTGCCCCACAGCTA +
Preference number: 4 (lower is better)
Translates to: GWPARQVGWEWAPQKVTRANLGL*AGAPQL
Trigger: TAGCTGTGGGGCACCAGCCCACAAGCCGAGGTTGGC...CCTGGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGCCAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp TCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTGCAAAGCCACAAGGCTaGCCAGCAAGGCAGGTTGGA +
Preference number: 4 (lower is better)
Translates to: SSAILPVAPRLWGWDAWPAKPQG*PARQVG
Trigger: TCCAACCTGCCTTGCTGGCCAGCCTTGTGGCTTTGC...AGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp GGCTGGCCAGCAAGGCAGGTTGGATGGGAGTGGGCACCTCAGAAAGTCACCAGGCGAGTGCCCCAGGAGTaGGAGGAAACCTGGGTGCAG +
Preference number: 4 (lower is better)
Translates to: GWPARQVGWEWAPQKVTRRVPQE*EETWVQ
Trigger: CTGCACCCAGGTTTCCTCCCACTCCTGGGGCACTCG...CCTGGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGCCAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTTCTGCAGCCCTTGGGCGGACGCCCCCTACCATaGGCAGAGAGGCAGGTATTG +
Preference number: 4 (lower is better)
Translates to: HRWSPQIELGGLFLQPLGGRPLP*AERQVL
Trigger: CAATACCTGCCTCTCTGCCCATGGTAGGGGGCGTCC...GCCCAAGGGCTGCAGAAACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp AGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCGAGTGCCCCAGGAGTaGGAGGAAACGACTGAGAGA +
Preference number: 4 (lower is better)
Translates to: SSSAILPVAPRLWGWDAWRVPQE*EETTER
Trigger: TCTCTCAGTCGTTTCCTCCCACTCCTGGGGCACTCG...CCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000543870.1
CDS-3UTR TCA 90 bp GGGAGGACCAGGAAGTTTGTGGAAAGGGGCCTGACCCAGTTCCACTGCAGGGAGCCGCCAGGGGCCTCCTaGGTCTTTGATGAGGGCTTC +
Preference number: 4 (lower is better)
Translates to: GRTRKFVERGLTQFHCREPPGAS*VFDEGF
Trigger: GAAGCCCTCATCAAAGACTCAGGAGGCCCCTGGCGG...CTCCCTGCAGTGGAACTGGGTCAGGCCCCTTTCCACAAACTTCCTGGTCCTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp TCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTTGTGGAGACAGAACTTaGAGCCAGGGGAGGGGAGAA +
Preference number: 4 (lower is better)
Translates to: SSAILPVAPRLWGWDAWPCGDRT*SQGRGE
Trigger: TTCTCCCCTCCCCTGGCTTCAAGTTCTGTCTCCACA...AGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp CCACTGTCCCCCTACCCACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTAGGAGCCCTGGTCACTaGCATCGCCACAGTTGTCCA +
Preference number: 4 (lower is better)
Translates to: PLSPYPPMEPPDRAGWPVRSPGH*HRHSCP
Trigger: TGGACAACTGTGGCGATGGCAGTGACCAGGGCTCCT...AACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTGGGTAGGGGGACAGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp CACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTTCTGCAGCCCTTGGGCTGGGTGGCCTGTTTCTaGAGCCCTTGGGCAGTTCTC +
Preference number: 4 (lower is better)
Translates to: HRWSPQIELGGLFLQPLGWVACF*SPWAVL
Trigger: GAGAACTGCCCAAGGGCTGCAGAAACAGGCCACCCA...GCCCAAGGGCTGCAGAAACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp CAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCGGGAGGAAACCTGGGTaGAGAAATGAGGAAGCTGTG +
Preference number: 4 (lower is better)
Translates to: QVPSCQWPPDCGVGTPGLGRKPG*RNEEAV
Trigger: CACAGCTTCCTCATTTCTGCACCCAGGTTTCCTCCC...GAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp GGTGAGACTGGCATTGGAAGGGCCCATGGGCCTAATGGGGAGGATGGGAATCTGCTGGGGGCAGGCGAGTaGCCCAGGAGTGGGAGGAAA +
Preference number: 4 (lower is better)
Translates to: GETGIGRAHGPNGEDGNLLGAGE*PRSGRK
Trigger: TTTCCTCCCACTCCTGGGGCACTCGCCTGCCCCCAG...CAGATTCCCATCCTCCCCATTAGGCCCATGGGCCCTTCCAATGCCAGTCTCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCAGGGAGTCAGGGATCTaGAGGTATGGGCATCTGTAC +
Preference number: 4 (lower is better)
Translates to: HPASGPQTVGLGRLASVSRESGI*RYGHLY
Trigger: GTACAGATGCCCATACCTCCAGATCCCTGACTCCCT...GGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp AGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGGAGGGCTTCACTCAGTaGAGCCTTCCAAAGCTGCGT +
Preference number: 4 (lower is better)
Translates to: SSSAILPVAPRLWGWDAWEGFTQ*SLPKLR
Trigger: ACGCAGCTTTGGAAGGCTCCACTGAGTGAAGCCCTC...CCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp GGGAGGACCAGGAAGTTTGTGGAAAGGGGCCTGACCCAGTTCCACTGCAGGGAGCCCAGACTGTGGGGTTaGGACGCCTGGCCTCTGTGT +
Preference number: 4 (lower is better)
Translates to: GRTRKFVERGLTQFHCREPRLWG*DAWPLC
Trigger: ACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGG...CTCCCTGCAGTGGAACTGGGTCAGGCCCCTTTCCACAAACTTCCTGGTCCTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp GGTGAGACTGGCATTGGAAGGGCCCATGGGCCTAATGGGGAGGATGGGAATCTGCCTCCACCCAGCCCCTaGCACCTCCTCTGGCAGACT +
Preference number: 4 (lower is better)
Translates to: GETGIGRAHGPNGEDGNLPPPSP*HLLWQT
Trigger: AGTCTGCCAGAGGAGGTGCCAGGGGCTGGGTGGAGG...CAGATTCCCATCCTCCCCATTAGGCCCATGGGCCCTTCCAATGCCAGTCTCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp TGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAAGGGACCCCAGATAGAGCTGGGTaGCCTGTTTCTGCAGCCCTT +
Preference number: 4 (lower is better)
Translates to: WPPDCGVGTPGLCVLEGTPDRAG*PVSAAL
Trigger: AAGGGCTGCAGAAACAGGCCACCCAGCTCTATCTGG...GGTCCCTTCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp TGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAAGGGACCCAGGTTGGATGGGAGTaGGCACCTCAGAAAGTCACC +
Preference number: 4 (lower is better)
Translates to: WPPDCGVGTPGLCVLEGTQVGWE*APQKVT
Trigger: GGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTG...GGTCCCTTCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp AGATTCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTGGTGCTGCACTCGGCCCCCAGCGTTCTGGAGTaGGGCAGGACGCCCCCTACC +
Preference number: 4 (lower is better)
Translates to: RFSSGITGCVKNLVLHSAPSVLE*GRTPPT
Trigger: GGTAGGGGGCGTCCTGCCCCACTCCAGAACGCTGGG...GGCCGAGTGCAGCACCAGGTTCTTGACACAGCCTGTGATGCCTGAGGAGAATCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp GGTGAGACTGGCATTGGAAGGGCCCATGGGCCTAATGGGGAGGATGGGAATCTGACTGCAGGTACCAGCTaGGTAGTGGGGAGGCCCGCC +
Preference number: 4 (lower is better)
Translates to: GETGIGRAHGPNGEDGNLTAGTS*VVGRPA
Trigger: GGCGGGCCTCCCCACTACCCAGCTGGTACCTGCAGT...CAGATTCCCATCCTCCCCATTAGGCCCATGGGCCCTTCCAATGCCAGTCTCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp GGTGAGACTGGCATTGGAAGGGCCCATGGGCCTAATGGGGAGGATGGGAATCTGTGGTGGCCGGAGTGGTaGGGGGAGGGGAAAGCAGAG +
Preference number: 4 (lower is better)
Translates to: GETGIGRAHGPNGEDGNLWWPEW*GEGKAE
Trigger: CTCTGCTTTCCCCTCCCCCCACCACTCCGGCCACCA...CAGATTCCCATCCTCCCCATTAGGCCCATGGGCCCTTCCAATGCCAGTCTCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp TTCAAGACGGGCACCTTGTCTTCAGGTAGGTCCTGGCACCTGGCCCTTCCTCTCCCTGGGGCAGGAAGCTaGCTTCCTGGTGGCCGGAGT +
Preference number: 4 (lower is better)
Translates to: FKTGTLSSGRSWHLALPLPGAGS*LPGGRS
Trigger: ACTCCGGCCACCAGGAAGCCAGCTTCCTGCCCCAGG...GAGAGGAAGGGCCAGGTGCCAGGACCTACCTGAAGACAAGGTGCCCGTCTTGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp GGTGAGACTGGCATTGGAAGGGCCCATGGGCCTAATGGGGAGGATGGGAATCTGATCCGGCTGGGCTCTTaGGGCTCCTGGGGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: GETGIGRAHGPNGEDGNLIRLGS*GSWGRK
Trigger: CTTCCTGCCCCAGGAGCCCCAAGAGCCCAGCCGGAT...CAGATTCCCATCCTCCCCATTAGGCCCATGGGCCCTTCCAATGCCAGTCTCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp ATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTGGCAGGGTCTTCCTCGCCTTCCCTaGCCATGTCTTCTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: IELEVRTSTASGLLLWQGLPRLP*PCLLQE
Trigger: CTCCTGGAGAAGACATGGCCAGGGAAGGCGAGGAAG...ACCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp TTCAAGACGGGCACCTTGTCTTCAGGTAGGTCCTGGCACCTGGCCCTTCCTCTCGAGAGGAGGGGGATATaGCCACCCTGCCCCATCTGC +
Preference number: 4 (lower is better)
Translates to: FKTGTLSSGRSWHLALPLERRGI*PPCPIC
Trigger: GCAGATGGGGCAGGGTGGTCATATCCCCCTCCTCTC...GAGAGGAAGGGCCAGGTGCCAGGACCTACCTGAAGACAAGGTGCCCGTCTTGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp TCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCCAGAGAGGCAGGTATTaGGCTCTGTGGAGACAGAAC +
Preference number: 4 (lower is better)
Translates to: SSSSAILPVAPRLWGWDAQRGRY*ALWRQN
Trigger: GTTCTGTCTCCACAGAGCTCAATACCTGCCTCTCTG...GGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp GGCTGGCCAGCAAGGCAGGTTGGATGGGAGTGGGCACCTCAGAAAGTCACCAGGGTCTTCTCCAGGAGGTaGGACTGGCATTGGAAGGGC +
Preference number: 4 (lower is better)
Translates to: GWPARQVGWEWAPQKVTRVFSRR*DWHWKG
Trigger: GCCCTTCCAATGCCAGTCTCACCTCCTGGAGAAGAC...CCTGGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGCCAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp TCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTACTGACGGGGGATTTTaGTGCCTGATGCAGCAGGTA +
Preference number: 4 (lower is better)
Translates to: SSAILPVAPRLWGWDAWPTDGGF*CLMQQV
Trigger: TACCTGCTGCATCAGGCATCAAAATCCCCCGTCAGT...AGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp TTCAAGACGGGCACCTTGTCTTCAGGTAGGTCCTGGCACCTGGCCCTTCCTCTCCCTCCATCCAGGCTCTaGTGTGCCCAGCAATGGGGC +
Preference number: 4 (lower is better)
Translates to: FKTGTLSSGRSWHLALPLPPSRL*CAQQWG
Trigger: GCCCCATTGCTGGGCACAGCAGAGCCTGGATGGAGG...GAGAGGAAGGGCCAGGTGCCAGGACCTACCTGAAGACAAGGTGCCCGTCTTGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp CACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTTCTGCAGCCCTTGGGCACTCTTACCAGGAGCTaGTACAGGCAGAGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: HRWSPQIELGGLFLQPLGTLTRS*YRQSPA
Trigger: TGCTGGGCTCTGCCTGTAGCAGCTCCTGGTAAGAGT...GCCCAAGGGCTGCAGAAACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp TGCAGGAGCCTGAAGATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTAGGAAGAAGCGGAACTaGAAGCGGATCCGGTCGCCG +
Preference number: 4 (lower is better)
Translates to: CRSLKIQLKCHPASGPQTRKKRN*KRIRSP
Trigger: CGGCGACCGGATCCGCTTCCAGTTCCGCTTCTTCCT...AGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGATCTTCAGGCTCCTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp TTGGGCCTGGATGACTGCAGGTACCAGCTGGGTAGTGGGGAGGCCCGCCTGGTCAGGAAGCTGTGTTTGTaGGGCCCGATCTCTCGTTCA +
Preference number: 4 (lower is better)
Translates to: LGLDDCRYQLGSGEARLVRKLCL*GPISRS
Trigger: TGAACGAGAGATCGGGCCCCACAAACACAGCTTCCT...GACCAGGCGGGCCTCCCCACTACCCAGCTGGTACCTGCAGTCATCCAGGCCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp TGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAAGGGACCCATACTTCTTGGGCCTaGATGACTGCAGGTACCAGC +
Preference number: 4 (lower is better)
Translates to: WPPDCGVGTPGLCVLEGTHTSWA*MTAGTS
Trigger: GCTGGTACCTGCAGTCATCCAGGCCCAAGAAGTATG...GGTCCCTTCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CCACTGTCCCCCTACCCACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTTCCCACAGATGCCCCTaGGCAGTACGGAGCCTATTT +
Preference number: 4 (lower is better)
Translates to: PLSPYPPMEPPDRAGWPVSHRCP*AVRSLF
Trigger: AAATAGGCTCCGTACTGCCCAGGGGCATCTGTGGGA...AACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTGGGTAGGGGGACAGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp GGGAGGACCAGGAAGTTTGTGGAAAGGGGCCTGACCCAGTTCCACTGCAGGGAGCCATCTGCAGGAGCCTaGAGATCCAGCTCAAGTGCC +
Preference number: 4 (lower is better)
Translates to: GRTRKFVERGLTQFHCREPSAGA*RSSSSA
Trigger: GGCACTTGAGCTGGATCTTCAGGCTCCTGCAGATGG...CTCCCTGCAGTGGAACTGGGTCAGGCCCCTTTCCACAAACTTCCTGGTCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp TTGGGCCTGGATGACTGCAGGTACCAGCTGGGTAGTGGGGAGGCCCGCCTGGTCAACCTTTGGGGCAACTaGAGAAGACAACAAGCCTCC +
Preference number: 4 (lower is better)
Translates to: LGLDDCRYQLGSGEARLVNLWGN*RRQQAS
Trigger: GGAGGCTTGTTGTCTTCTGCAGTTGCCCCAAAGGTT...GACCAGGCGGGCCTCCCCACTACCCAGCTGGTACCTGCAGTCATCCAGGCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp TTCAAGACGGGCACCTTGTCTTCAGGTAGGTCCTGGCACCTGGCCCTTCCTCTCTGTCTCCAAAGCAGTTaGAGTCAGGGCGGCTGCCCC +
Preference number: 4 (lower is better)
Translates to: FKTGTLSSGRSWHLALPLCLQSS*SQGGCP
Trigger: GGGGCAGCCGCCCTGACTGCAACTGCTTTGGAGACA...GAGAGGAAGGGCCAGGTGCCAGGACCTACCTGAAGACAAGGTGCCCGTCTTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp TGCAGGAGCCTGAAGATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTAGGAGCCCTGGTCACTaGCATCGCCACAGTTGTCCA +
Preference number: 4 (lower is better)
Translates to: CRSLKIQLKCHPASGPQTRSPGH*HRHSCP
Trigger: TGGACAACTGTGGCGATGGCAGTGACCAGGGCTCCT...AGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGATCTTCAGGCTCCTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp TGCAGGAGCCTGAAGATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTAATCCAGAGGGATCCTaGAGACCCGAGAGCTGGGGA +
Preference number: 4 (lower is better)
Translates to: CRSLKIQLKCHPASGPQTNPEGS*RPESWG
Trigger: TCCCCAGCTCTCGGGTCTGCAGGATCCCTCTGGATT...AGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGATCTTCAGGCTCCTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp TGCAGGAGCCTGAAGATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGGAGCCTTCCAAAGCTaGGTCTTGTCTCGTGGGGTC +
Preference number: 4 (lower is better)
Translates to: CRSLKIQLKCHPASGPQTGAFQS*VLSRGV
Trigger: GACCCCACGAGACAAGACGCAGCTTTGGAAGGCTCC...AGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGATCTTCAGGCTCCTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp TGCAGGAGCCTGAAGATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTCATCGCAGGAGTCTCTaGCACCCACTCAGGATTGGG +
Preference number: 4 (lower is better)
Translates to: CRSLKIQLKCHPASGPQTHRRSL*HPLRIG
Trigger: CCCAATCCTGAGTGGGTGGCAGAGACTCCTGCGATG...AGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGATCTTCAGGCTCCTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp AGATTCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTGGTGCTGCACTCGGCCGTGTCAAGAACCTGGTaGTGCACTCGGCCCGACCCG +
Preference number: 4 (lower is better)
Translates to: RFSSGITGCVKNLVLHSAVSRTW*CTRPDP
Trigger: CGGGTCGGGCCGAGTGCAGCACCAGGTTCTTGACAC...GGCCGAGTGCAGCACCAGGTTCTTGACACAGCCTGTGATGCCTGAGGAGAATCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp AGATTCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTGGTGCTGCACTCGGCCCCTCTCTCCCACAGATaGCCCTGGGCAGTACGGAGC +
Preference number: 4 (lower is better)
Translates to: RFSSGITGCVKNLVLHSAPLSHR*PWAVRS
Trigger: GCTCCGTACTGCCCAGGGGCATCTGTGGGAGAGAGG...GGCCGAGTGCAGCACCAGGTTCTTGACACAGCCTGTGATGCCTGAGGAGAATCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp GGCTGGCCAGCAAGGCAGGTTGGATGGGAGTGGGCACCTCAGAAAGTCACCAGGTGCTGTGCCCAGCAATaGGGCAGACCCACAGAATCT +
Preference number: 4 (lower is better)
Translates to: GWPARQVGWEWAPQKVTRCCAQQ*GRPTES
Trigger: AGATTCTGTGGGTCTGCCCCATTGCTGGGCACAGCA...CCTGGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGCCAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAAGGGATCTGGAGGTATaGGCATCTGTACTTCCTGTC +
Preference number: 4 (lower is better)
Translates to: LPVAPRLWGWDAWPLCPRRDLEV*ASVLPV
Trigger: GACAGGAAGTACAGATGCCCATACCTCCAGATCCCT...TCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp CCACTGTCCCCCTACCCACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTAGGGAGTCAGGGATCTaGAGGTATGGGCATCTGTAC +
Preference number: 4 (lower is better)
Translates to: PLSPYPPMEPPDRAGWPVRESGI*RYGHLY
Trigger: GTACAGATGCCCATACCTCCAGATCCCTGACTCCCT...AACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTGGGTAGGGGGACAGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp ATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTGGCAGGGTAAAGTCACCAGGACTTaGGGTCAGGAACAGTGGCTG +
Preference number: 4 (lower is better)
Translates to: IELEVRTSTASGLLLWQGKVTRT*GQEQWL
Trigger: CAGCCACTGTTCCTGACCCCAAGTCCTGGTGACTTT...ACCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp GGGAGGACCAGGAAGTTTGTGGAAAGGGGCCTGACCCAGTTCCACTGCAGGGAGATCAATGACGGCGAGTaGCACCGGGTGACAGCACTG +
Preference number: 4 (lower is better)
Translates to: GRTRKFVERGLTQFHCREINDGE*HRVTAL
Trigger: CAGTGCTGTCACCCGGTGCCACTCGCCGTCATTGAT...CTCCCTGCAGTGGAACTGGGTCAGGCCCCTTTCCACAAACTTCCTGGTCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp GGTGAGACTGGCATTGGAAGGGCCCATGGGCCTAATGGGGAGGATGGGAATCTGAGTGGCCTCCTGCTCTaGCAGGGTGTGGTGAGTGTG +
Preference number: 4 (lower is better)
Translates to: GETGIGRAHGPNGEDGNLSGLLL*QGVVSV
Trigger: CACACTCACCACACCCTGCCAGAGCAGGAGGCCACT...CAGATTCCCATCCTCCCCATTAGGCCCATGGGCCCTTCCAATGCCAGTCTCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp GGGAGGACCAGGAAGTTTGTGGAAAGGGGCCTGACCCAGTTCCACTGCAGGGAGCTGATGCAGCAGGTATaGCACCACCCTCCTCTCTCC +
Preference number: 4 (lower is better)
Translates to: GRTRKFVERGLTQFHCRELMQQV*HHPPLS
Trigger: GGAGAGAGGAGGGTGGTGCCATACCTGCTGCATCAG...CTCCCTGCAGTGGAACTGGGTCAGGCCCCTTTCCACAAACTTCCTGGTCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CAA 72 bp AGGACTTCATCAGCCTCGGGCTTCAAGACGGGCACCTaGTCTTCAGGTAGGTCCTGGCACCTGGCCCTTCCT +
Preference number: 4 (lower is better)
Translates to: RTSSASGFKTGT*SSGRSWHLALP
Trigger: AGGAAGGGCCAGGTGCCAGGACCTACCTGAAGACAAGGTGCCCGTCTTGAAGCCCGAGGCTGATGAAGTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp GGGAGGACCAGGAAGTTTGTGGAAAGGGGCCTGACCCAGTTCCACTGCAGGGAGTTGAGGGGATGCACCTaGCATTCTGGCAGCGGAAGT +
Preference number: 4 (lower is better)
Translates to: GRTRKFVERGLTQFHCRELRGCT*HSGSGS
Trigger: ACTTCCGCTGCCAGAATGGCAGGTGCATCCCCTCAA...CTCCCTGCAGTGGAACTGGGTCAGGCCCCTTTCCACAAACTTCCTGGTCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp AGATTCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTGGTGCTGCACTCGGCCCGAGGCTTGAGGGGATaGACCTGCCATTCTGGCAGC +
Preference number: 4 (lower is better)
Translates to: RFSSGITGCVKNLVLHSARGLRG*TCHSGS
Trigger: GCTGCCAGAATGGCAGGTGCATCCCCTCAAGCCTCG...GGCCGAGTGCAGCACCAGGTTCTTGACACAGCCTGTGATGCCTGAGGAGAATCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp TGCAGGAGCCTGAAGATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTTTGGGCCTGGATGACTaGAGGTACCAGCTGGGTAGT +
Preference number: 4 (lower is better)
Translates to: CRSLKIQLKCHPASGPQTLGLDD*RYQLGS
Trigger: ACTACCCAGCTGGTACCTGCAGTCATCCAGGCCCAA...AGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGATCTTCAGGCTCCTGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp GGCTGGCCAGCAAGGCAGGTTGGATGGGAGTGGGCACCTCAGAAAGTCACCAGGTGTTTCTGCAGCCCTTaGGCAGTTCTCACTCCTAGG +
Preference number: 4 (lower is better)
Translates to: GWPARQVGWEWAPQKVTRCFCSP*AVLTPR
Trigger: CCTAGGAGTGAGAACTGCCCAAGGGCTGCAGAAACA...CCTGGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGCCAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp GGGAGGACCAGGAAGTTTGTGGAAAGGGGCCTGACCCAGTTCCACTGCAGGGAGGCAAGGCAGGTTGGATaGGAGTGGGCACCTCAGAAA +
Preference number: 4 (lower is better)
Translates to: GRTRKFVERGLTQFHCREARQVG*EWAPQK
Trigger: TTTCTGAGGTGCCCACTCCCATCCAACCTGCCTTGC...CTCCCTGCAGTGGAACTGGGTCAGGCCCCTTTCCACAAACTTCCTGGTCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp AGATTCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTGGTGCTGCACTCGGCCCCGAGACCATCGAGCTaGAGGTTCGGACCAGCACAG +
Preference number: 4 (lower is better)
Translates to: RFSSGITGCVKNLVLHSAPRPSS*RFGPAQ
Trigger: CTGTGCTGGTCCGAACCTCCAGCTCGATGGTCTCGG...GGCCGAGTGCAGCACCAGGTTCTTGACACAGCCTGTGATGCCTGAGGAGAATCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp AGATTCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTGGTGCTGCACTCGGCCTCCTGCATGTTGGCGTaGAGGTGGGGGTCAGGGGAA +
Preference number: 4 (lower is better)
Translates to: RFSSGITGCVKNLVLHSASCMLA*RWGSGE
Trigger: TTCCCCTGACCCCCACCTCCACGCCAACATGCAGGA...GGCCGAGTGCAGCACCAGGTTCTTGACACAGCCTGTGATGCCTGAGGAGAATCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp AGATTCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTGGTGCTGCACTCGGCCGTCACACACGAGGCTTaGGGGGATGCACCTGCCATT +
Preference number: 4 (lower is better)
Translates to: RFSSGITGCVKNLVLHSAVTHEA*GDAPAI
Trigger: AATGGCAGGTGCATCCCCTCAAGCCTCGTGTGTGAC...GGCCGAGTGCAGCACCAGGTTCTTGACACAGCCTGTGATGCCTGAGGAGAATCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp GGCTGGCCAGCAAGGCAGGTTGGATGGGAGTGGGCACCTCAGAAAGTCACCAGGTTTCTTAATAAACGGTaGTATCCCCGCCAGGGGCCT +
Preference number: 4 (lower is better)
Translates to: GWPARQVGWEWAPQKVTRFLNKR*YPRQGP
Trigger: AGGCCCCTGGCGGGGATAGCACCGTTTATTAAGAAA...CCTGGTGACTTTCTGAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGCCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp TGCAGGAGCCTGAAGATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTACAGAATCTTCAGCTTaGGGTCTCTGGGGAGACTGG +
Preference number: 4 (lower is better)
Translates to: CRSLKIQLKCHPASGPQTTESSA*GLWGDW
Trigger: CCAGTCTCCCCAGAGACCCCAAGCTGAAGATTCTGT...AGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGATCTTCAGGCTCCTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR TCA 90 bp AGATTCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTGGTGCTGCACTCGGCCGGGGATTTTGATGCCTaGTGCAGCAGGTATGGCACC +
Preference number: 4 (lower is better)
Translates to: RFSSGITGCVKNLVLHSAGDFDA*CSRYGT
Trigger: GGTGCCATACCTGCTGCATCAGGCATCAAAATCCCC...GGCCGAGTGCAGCACCAGGTTCTTGACACAGCCTGTGATGCCTGAGGAGAATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp TGCAGGAGCCTGAAGATCCAGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTAACCTTTGGGGCAACTaGAGAAGACAACAAGCCTCC +
Preference number: 4 (lower is better)
Translates to: CRSLKIQLKCHPASGPQTNLWGN*RRQQAS
Trigger: GGAGGCTTGTTGTCTTCTGCAGTTGCCCCAAAGGTT...AGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCTGGATCTTCAGGCTCCTGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp AGATTCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTGGTGCTGCACTCGGCCAAGAAACCGAGGCGATaGCACGCTTTGCTGCTACCG +
Preference number: 4 (lower is better)
Translates to: RFSSGITGCVKNLVLHSAKKPRR*HALLLP
Trigger: CGGTAGCAGCAAAGCGTGGCATCGCCTCGGTTTCTT...GGCCGAGTGCAGCACCAGGTTCTTGACACAGCCTGTGATGCCTGAGGAGAATCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp CATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTTGCCTACATCTCATTaGAAGAACTGCTCAATTTCA +
Preference number: 4 (lower is better)
Translates to: HPASGPQTVGLGRLASVSLPTSH*KNCSIS
Trigger: TGAAATTGAGCAGTTCTTTCAATGAGATGTAGGCAA...GGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp CCTCCTGTGGTCTTTGTCTTGATTTTTCTTAATAAACGGTGCTATCCCCGCCAGGCAGCCTGCCCGAGGTaGCCGAGACCATCGAGCTGG +
Preference number: 4 (lower is better)
Translates to: PPVVFVLIFLNKRCYPRQAACPR*PRPSSW
Trigger: CCAGCTCGATGGTCTCGGGCACCTCGGGCAGGCTGC...CTGGCGGGGATAGCACCGTTTATTAAGAAAAATCAAGACAAAGACCACAGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp CCTCCTGTGGTCTTTGTCTTGATTTTTCTTAATAAACGGTGCTATCCCCGCCAGAAGTCCACGCGGGGCTaGCGGCCTCTCGTGACCAGG +
Preference number: 4 (lower is better)
Translates to: PPVVFVLIFLNKRCYPRQKSTRG*RPLVTR
Trigger: CCTGGTCACGAGAGGCCGCCAGCCCCGCGTGGACTT...CTGGCGGGGATAGCACCGTTTATTAAGAAAAATCAAGACAAAGACCACAGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CCA 90 bp CCTCCTGTGGTCTTTGTCTTGATTTTTCTTAATAAACGGTGCTATCCCCGCCAGCGGACTGAACTCCGCTaGGGGCAGGCGAGTGCCCCA +
Preference number: 4 (lower is better)
Translates to: PPVVFVLIFLNKRCYPRQRTELR*GQASAP
Trigger: TGGGGCACTCGCCTGCCCCCAGCGGAGTTCAGTCCG...CTGGCGGGGATAGCACCGTTTATTAAGAAAAATCAAGACAAAGACCACAGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
3UTR CAA 72 bp TCGCAGGAGTCTCTGCCACCCACTCAGGATTGGGAATaGTCTTTAGTGCCGGCTGTGGAGCAAAAGGCAGCT +
Preference number: 4 (lower is better)
Translates to: SQESLPPTQDWE*SLVPAVEQKAA
Trigger: AGCTGCCTTTTGCTCCACAGCCGGCACTAAAGACAATTCCCAATCCTGAGTGGGTGGCAGAGACTCCTGCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
3UTR CAA 72 bp ACGGGCATCGCAGGAGTCTCTGCCACCCACTCAGGATaGGGAATTGTCTTTAGTGCCGGCTGTGGAGCAAAA +
Preference number: 4 (lower is better)
Translates to: TGIAGVSATHSG*GIVFSAGCGAK
Trigger: TTTTGCTCCACAGCCGGCACTAAAGACAATTCCCAATCCTGAGTGGGTGGCAGAGACTCCTGCGATGCCCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp AGATTCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTGGTGCTGCACTCGGCCAGGGATCTGGAGGTATaGGCATCTGTACTTCCTGTC +
Preference number: 4 (lower is better)
Translates to: RFSSGITGCVKNLVLHSARDLEV*ASVLPV
Trigger: GACAGGAAGTACAGATGCCCATACCTCCAGATCCCT...GGCCGAGTGCAGCACCAGGTTCTTGACACAGCCTGTGATGCCTGAGGAGAATCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp AGATTCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTGGTGCTGCACTCGGCCCCACCCACTCAGGATTaGGAATTGTCTTTAGTGCCG +
Preference number: 4 (lower is better)
Translates to: RFSSGITGCVKNLVLHSAPPTQD*ELSLVP
Trigger: CGGCACTAAAGACAATTCCCAATCCTGAGTGGGTGG...GGCCGAGTGCAGCACCAGGTTCTTGACACAGCCTGTGATGCCTGAGGAGAATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp CCTCCTGTGGTCTTTGTCTTGATTTTTCTTAATAAACGGTGCTATCCCCGCCAGGAGAGGAGGGGGATATaGCCACCCTGCCCCATCTGC +
Preference number: 4 (lower is better)
Translates to: PPVVFVLIFLNKRCYPRQERRGI*PPCPIC
Trigger: GCAGATGGGGCAGGGTGGTCATATCCCCCTCCTCTC...CTGGCGGGGATAGCACCGTTTATTAAGAAAAATCAAGACAAAGACCACAGGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp CCTCCTGTGGTCTTTGTCTTGATTTTTCTTAATAAACGGTGCTATCCCCGCCAGTGCAGTCAGGGCGGCTaGCCCCAGCAAGAGCAACCT +
Preference number: 4 (lower is better)
Translates to: PPVVFVLIFLNKRCYPRQCSQGG*PQQEQP
Trigger: AGGTTGCTCTTGCTGGGGGCAGCCGCCCTGACTGCA...CTGGCGGGGATAGCACCGTTTATTAAGAAAAATCAAGACAAAGACCACAGGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR TCA 90 bp CCTCCTGTGGTCTTTGTCTTGATTTTTCTTAATAAACGGTGCTATCCCCGCCAGCTTCTTGGGCCTGGATaGCTGCAGGTACCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: PPVVFVLIFLNKRCYPRQLLGPG*LQVPAG
Trigger: CCCAGCTGGTACCTGCAGTCATCCAGGCCCAAGAAG...CTGGCGGGGATAGCACCGTTTATTAAGAAAAATCAAGACAAAGACCACAGGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp CCTCCTGTGGTCTTTGTCTTGATTTTTCTTAATAAACGGTGCTATCCCCGCCAGATCCAGGCTCTGCTGTaGCCAGCAATGGGGCAGACC +
Preference number: 4 (lower is better)
Translates to: PPVVFVLIFLNKRCYPRQIQALL*PAMGQT
Trigger: GGTCTGCCCCATTGCTGGGCACAGCAGAGCCTGGAT...CTGGCGGGGATAGCACCGTTTATTAAGAAAAATCAAGACAAAGACCACAGGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR GCA 90 bp GGTGAGACTGGCATTGGAAGGGCCCATGGGCCTAATGGGGAGGATGGGAATCTGATGATCTTAGTGCTTTaGCTTCCAGATCCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: GETGIGRAHGPNGEDGNLMILVL*LPDPLH
Trigger: ATGAAGAGGATCTGGAAGGCAAAGCACTAAGATCAT...CAGATTCCCATCCTCCCCATTAGGCCCATGGGCCCTTCCAATGCCAGTCTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp GGGAGGACCAGGAAGTTTGTGGAAAGGGGCCTGACCCAGTTCCACTGCAGGGAGGCTACTTTGGTTTCTTaGCTACATCTCATTGAAAGA +
Preference number: 4 (lower is better)
Translates to: GRTRKFVERGLTQFHCREATLVS*LHLIER
Trigger: TCTTTCAATGAGATGTAGGCAAGAAACCAAAGTAGC...CTCCCTGCAGTGGAACTGGGTCAGGCCCCTTTCCACAAACTTCCTGGTCCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp AGATTCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTGGTGCTGCACTCGGCCACTGCTCAATTTCAGTaGGAAGTGAGTGAAATTGAG +
Preference number: 4 (lower is better)
Translates to: RFSSGITGCVKNLVLHSATAQFQ*EVSEIE
Trigger: CTCAATTTCACTCACTTCTCACTGAAATTGAGCAGT...GGCCGAGTGCAGCACCAGGTTCTTGACACAGCCTGTGATGCCTGAGGAGAATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp ATTATTATGAATTTTTGTAAGAAACCGAGGCGATGCCACGCTTTGCTGCTACCGGACTGGAGGTGGGCATaGCACCCTCACACACACAGC +
Preference number: 4 (lower is better)
Translates to: IIMNFCKKPRRCHALLLPDWRWA*HPHTHS
Trigger: GCTGTGTGTGTGAGGGTGGCATGCCCACCTCCAGTC...CGGTAGCAGCAAAGCGTGGCATCGCCTCGGTTTCTTACAAAAATTCATAATAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CCA 90 bp ATTATTATGAATTTTTGTAAGAAACCGAGGCGATGCCACGCTTTGCTGCTACCGTGGGGTTGGGACGCCTaGCCTCTGTGTCCTAGAAGG +
Preference number: 4 (lower is better)
Translates to: IIMNFCKKPRRCHALLLPWGWDA*PLCPRR
Trigger: CCTTCTAGGACACAGAGGCCAGGCGTCCCAACCCCA...CGGTAGCAGCAAAGCGTGGCATCGCCTCGGTTTCTTACAAAAATTCATAATAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR TCA 90 bp CCTCCTGTGGTCTTTGTCTTGATTTTTCTTAATAAACGGTGCTATCCCCGCCAGACAGGGACAGACTTCTaGGTCTGGAGTCTCGATATC +
Preference number: 4 (lower is better)
Translates to: PPVVFVLIFLNKRCYPRQTGTDF*VWSLDI
Trigger: GATATCGAGACTCCAGACTCAGAAGTCTGTCCCTGT...CTGGCGGGGATAGCACCGTTTATTAAGAAAAATCAAGACAAAGACCACAGGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR GCA 90 bp CCTCCTGTGGTCTTTGTCTTGATTTTTCTTAATAAACGGTGCTATCCCCGCCAGTTTCTTAATAAACGGTaGTATCCCCGCCAGGGGCCT +
Preference number: 4 (lower is better)
Translates to: PPVVFVLIFLNKRCYPRQFLNKR*YPRQGP
Trigger: AGGCCCCTGGCGGGGATAGCACCGTTTATTAAGAAA...CTGGCGGGGATAGCACCGTTTATTAAGAAAAATCAAGACAAAGACCACAGGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 90 bp GCACCCAGAGCCCGCAGTCGGTGTCCGGAGCCACGAAGTAGAACCTaGGCGATGCGGCGTGCGAGCGCAGCAGCAGCCCGTCCCCCTGCC +
Preference number: 5 (lower is better)
Translates to: APRARSRCPEPRSRT*AMRRASAAAARPPA
Trigger: GGCAGGGGGACGGGCTGCTGCTGCGCTCGCACGCCGCATCGCGCAGGTTCTACTTCGTGGCTCCGGACACCGACTGCGGGCTCTGGGTGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 90 bp GAGCCCGCAGTCGGTGTCCGGAGCCACGAAGTAGAACCTGCGCGATaGGGCGTGCGAGCGCAGCAGCAGCCCGTCCCCCTGCCACGTCTG +
Preference number: 5 (lower is better)
Translates to: EPAVGVRSHEVEPAR*GVRAQQQPVPLPRL
Trigger: CAGACGTGGCAGGGGGACGGGCTGCTGCTGCGCTCGCACGCCGCATCGCGCAGGTTCTACTTCGTGGCTCCGGACACCGACTGCGGGCTC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 90 bp AACCTGCGCGATGCGGCGTGCGAGCGCAGCAGCAGCCCGTCCCCCTaGCACGTCTGCCCGCACAGTTCCGCCAGGTCGGCTGTCTCCAAA +
Preference number: 5 (lower is better)
Translates to: NLRDAACERSSSPSP*HVCPHSSARSAVSK
Trigger: TTTGGAGACAGCCGACCTGGCGGAACTGTGCGGGCAGACGTGGCAGGGGGACGGGCTGCTGCTGCGCTCGCACGCCGCATCGCGCAGGTT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 90 bp GACCAGGAAGAAGCGGAACTGGAAGCGGATCCGGTCGCCGGGGGCTaGCGCCTGCACCCAGAGCCCGCAGTCGGTGTCCGGAGCCACGAA +
Preference number: 5 (lower is better)
Translates to: DQEEAELEADPVAGG*RLHPEPAVGVRSHE
Trigger: TTCGTGGCTCCGGACACCGACTGCGGGCTCTGGGTGCAGGCGGCAGCCCCCGGCGACCGGATCCGCTTCCAGTTCCGCTTCTTCCTGGTC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 90 bp GATGCGGCGTGCGAGCGCAGCAGCAGCCCGTCCCCCTGCCACGTCTaGCCGCACAGTTCCGCCAGGTCGGCTGTCTCCAAAGCAGTTGCA +
Preference number: 5 (lower is better)
Translates to: DAACERSSSPSPCHV*PHSSARSAVSKAVA
Trigger: TGCAACTGCTTTGGAGACAGCCGACCTGGCGGAACTGTGCGGGCAGACGTGGCAGGGGGACGGGCTGCTGCTGCGCTCGCACGCCGCATC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CAA 90 bp TCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCCCCAGACTGTGGGGTaGGGACGCCTGGCCTCTGTG +
Preference number: 5 (lower is better)
Translates to: SSAILPVAPRLWGWDAWPPQTVG*GRLASV
Trigger: CACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGG...AGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CAA 90 bp AGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGGGCCAGCAAGGCAGGTaGGATGGGAGTGGGCACCTC +
Preference number: 5 (lower is better)
Translates to: SSSAILPVAPRLWGWDAWGQQGR*DGSGHL
Trigger: GAGGTGCCCACTCCCATCCAACCTGCCTTGCTGGCC...CCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp TGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGAAGGGACCCTGCCATCGCCACAGTaGTCCATGCCCCAGGGGTCA +
Preference number: 5 (lower is better)
Translates to: WPPDCGVGTPGLCVLEGTLPSPQ*SMPQGS
Trigger: TGACCCCTGGGGCATGGACAACTGTGGCGATGGCAG...GGTCCCTTCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CAA 90 bp CATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTTCCAAAGCTGCGTCTaGTCTCGTGGGGTCCCTGCC +
Preference number: 5 (lower is better)
Translates to: HPASGPQTVGLGRLASVSFQSCV*SRGVPA
Trigger: GGCAGGGACCCCACGAGACAAGACGCAGCTTTGGAA...GGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CAA 90 bp CCACTGTCCCCCTACCCACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTAGAGCCAACCTCGGCTaGTGGGCTGGTGCCCCACAG +
Preference number: 5 (lower is better)
Translates to: PLSPYPPMEPPDRAGWPVRANLG*WAGAPQ
Trigger: CTGTGGGGCACCAGCCCACAAGCCGAGGTTGGCTCT...AACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTGGGTAGGGGGACAGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp ATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTGGCAGGGTCTGTCTCCAAAGCAGTaGCAGTCAGGGCGGCTGCCC +
Preference number: 5 (lower is better)
Translates to: IELEVRTSTASGLLLWQGLSPKQ*QSGRLP
Trigger: GGGCAGCCGCCCTGACTGCAACTGCTTTGGAGACAG...ACCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp AGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGGGTCACACACGAGGCTaGAGGGGATGCACCTGCCAT +
Preference number: 5 (lower is better)
Translates to: SSSAILPVAPRLWGWDAWGHTRG*RGCTCH
Trigger: ATGGCAGGTGCATCCCCTCAAGCCTCGTGTGTGACC...CCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CAA 90 bp CACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTTCTGCAGCCCTTGGGCCTGCCATCGCCACAGTaGTCCATGCCCCAGGGGTCA +
Preference number: 5 (lower is better)
Translates to: HRWSPQIELGGLFLQPLGLPSPQ*SMPQGS
Trigger: TGACCCCTGGGGCATGGACAACTGTGGCGATGGCAG...GCCCAAGGGCTGCAGAAACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp CATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCCCCAGCTCATACTTCTaGGGCCTGGATGACTGCAGG +
Preference number: 5 (lower is better)
Translates to: HPASGPQTVGLGRLASVSPSSYF*GLDDCR
Trigger: CCTGCAGTCATCCAGGCCCAAGAAGTATGAGCTGGG...GGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp AGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGGAGGTGAGACTGGCATaGGAAGGGCCCATGGGCCTA +
Preference number: 5 (lower is better)
Translates to: SSSAILPVAPRLWGWDAWEVRLA*EGPMGL
Trigger: TAGGCCCATGGGCCCTTCCAATGCCAGTCTCACCTC...CCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS GCA 90 bp CTGGTGACCAGGAGCCCTGGTCACTGCCATCGCCACAGTTGTCCATaGCCCAGGGGTCACACACGAGGCTTGAGGGGATGCACCTGCCAT +
Preference number: 5 (lower is better)
Translates to: LVTRSPGHCHRHSCP*PRGHTRGLRGCTCH
Trigger: ATGGCAGGTGCATCCCCTCAAGCCTCGTGTGTGACCCCTGGGGCATGGACAACTGTGGCGATGGCAGTGACCAGGGCTCCTGGTCACCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CAA 90 bp CATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCCACAGAATCTTCAGCTaGGGGTCTCTGGGGAGACTG +
Preference number: 5 (lower is better)
Translates to: HPASGPQTVGLGRLASVSHRIFS*GSLGRL
Trigger: CAGTCTCCCCAGAGACCCCAAGCTGAAGATTCTGTG...GGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CAA 90 bp AGATTCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTGGTGCTGCACTCGGCCCCCCAGACTGTGGGGTaGGGACGCCTGGCCTCTGTG +
Preference number: 5 (lower is better)
Translates to: RFSSGITGCVKNLVLHSAPQTVG*GRLASV
Trigger: CACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGG...GGCCGAGTGCAGCACCAGGTTCTTGACACAGCCTGTGATGCCTGAGGAGAATCT
62% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp CACCCAGCCCCTGGCACCTCCTCTGGCAGACTCCCCCTCCTACCACGTCCTCCTGCCACCCACTCAGGATaGGGAATTGTCTTTAGTGCC +
Preference number: 5 (lower is better)
Translates to: HPAPGTSSGRLPLLPRPPATHSG*GIVFSA
Trigger: GGCACTAAAGACAATTCCCAATCCTGAGTGGGTGGC...AGGAGGACGTGGTAGGAGGGGGAGTCTGCCAGAGGAGGTGCCAGGGGCTGGGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp AGCTCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGATGAGGAAGCTGTGTTaGTGGGGCCCGATCTCTCGT +
Preference number: 5 (lower is better)
Translates to: SSSAILPVAPRLWGWDAWMRKLC*WGPISR
Trigger: ACGAGAGATCGGGCCCCACAAACACAGCTTCCTCAT...CCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGAGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp CAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCGCAGAGAGGCAGGTATaGAGCTCTGTGGAGACAGAA +
Preference number: 5 (lower is better)
Translates to: QVPSCQWPPDCGVGTPGLAERQV*SSVETE
Trigger: TTCTGTCTCCACAGAGCTCAATACCTGCCTCTCTGC...GAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp CTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTCTGTGTCCTAGACAGCAAGAGCAACCTTaGGGGCAACTGCAGAAGACA +
Preference number: 5 (lower is better)
Translates to: LPVAPRLWGWDAWPLCPRQQEQP*GQLQKT
Trigger: TGTCTTCTGCAGTTGCCCCAAAGGTTGCTCTTGCTG...TCTAGGACACAGAGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 90 bp TTCCGCCAGGTCGGCTGTCTCCAAAGCAGTTGCAGTCAGGGCGGCTaGCCCCAGCAAGAGCAACCTTTGGGGCAACTGCAGAAGACAACA +
Preference number: 5 (lower is better)
Translates to: FRQVGCLQSSCSQGG*PQQEQPLGQLQKTT
Trigger: TGTTGTCTTCTGCAGTTGCCCCAAAGGTTGCTCTTGCTGGGGGCAGCCGCCCTGACTGCAACTGCTTTGGAGACAGCCGACCTGGCGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 90 bp ACTCAGTGGAGCCTTCCAAAGCTGCGTCTTGTCTCGTGGGGTCCCTaGCTGCTGGGGAACTCCTCTCAGCTGCAATCCAGAGGGATCCTG +
Preference number: 5 (lower is better)
Translates to: TQWSLPKLRLVSWGP*LLGNSSQLQSRGIL
Trigger: CAGGATCCCTCTGGATTGCAGCTGAGAGGAGTTCCCCAGCAGGCAGGGACCCCACGAGACAAGACGCAGCTTTGGAAGGCTCCACTGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS CCA 90 bp GAGGGCTTCACTCAGTGGAGCCTTCCAAAGCTGCGTCTTGTCTCGTaGGGTCCCTGCCTGCTGGGGAACTCCTCTCAGCTGCAATCCAGA +
Preference number: 5 (lower is better)
Translates to: EGFTQWSLPKLRLVS*GPCLLGNSSQLQSR
Trigger: TCTGGATTGCAGCTGAGAGGAGTTCCCCAGCAGGCAGGGACCCCACGAGACAAGACGCAGCTTTGGAAGGCTCCACTGAGTGAAGCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS CCA 90 bp GGGAGACTGGAGTATGGGGCCTGGTCAGGCCAGCAGGGAGGCTGGTaGGACACAAGGAGAAGGGGGAGGCAAGTCTTCACTATGATCTTA +
Preference number: 5 (lower is better)
Translates to: GRLEYGAWSGQQGGW*DTRRRGRQVFTMIL
Trigger: TAAGATCATAGTGAAGACTTGCCTCCCCCTTCTCCTTGTGTCCCACCAGCCTCCCTGCTGGCCTGACCAGGCCCCATACTCCAGTCTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp AGATTCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTGGTGCTGCACTCGGCCGGTCACACACGAGGCTaGAGGGGATGCACCTGCCAT +
Preference number: 5 (lower is better)
Translates to: RFSSGITGCVKNLVLHSAGHTRG*RGCTCH
Trigger: ATGGCAGGTGCATCCCCTCAAGCCTCGTGTGTGACC...GGCCGAGTGCAGCACCAGGTTCTTGACACAGCCTGTGATGCCTGAGGAGAATCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp CCACTGTCCCCCTACCCACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTACTCAGGATTGGGAATaGTCTTTAGTGCCGGCTGTG +
Preference number: 5 (lower is better)
Translates to: PLSPYPPMEPPDRAGWPVTQDWE*SLVPAV
Trigger: CACAGCCGGCACTAAAGACAATTCCCAATCCTGAGT...AACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTGGGTAGGGGGACAGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp CCACTGTCCCCCTACCCACCGATGGAGCCCCCAGATAGAGCTGGGTGGCCTGTTGGGGAAAGAAAGAGCTaGGGAAACAGGGACAGACTT +
Preference number: 5 (lower is better)
Translates to: PLSPYPPMEPPDRAGWPVGERKS*GNRDRL
Trigger: AAGTCTGTCCCTGTTTCCCAAGCTCTTTCTTTCCCC...AACAGGCCACCCAGCTCTATCTGGGGGCTCCATCGGTGGGTAGGGGGACAGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp TCAAGTGCCATCCTGCCAGTGGCCCCCAGACTGTGGGGTTGGGACGCCTGGCCTTATGATCTTAGTGCTTaGCCTTCCAGATCCTCTTCA +
Preference number: 5 (lower is better)
Translates to: SSAILPVAPRLWGWDAWPYDLSA*PSRSSS
Trigger: TGAAGAGGATCTGGAAGGCAAAGCACTAAGATCATA...AGGCCAGGCGTCCCAACCCCACAGTCTGGGGGCCACTGGCAGGATGGCACTTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp CCTCCTGTGGTCTTTGTCTTGATTTTTCTTAATAAACGGTGCTATCCCCGCCAGTATCCGGCTGGGCTCTaGGGGCTCCTGGGGCAGGAA +
Preference number: 5 (lower is better)
Translates to: PPVVFVLIFLNKRCYPRQYPAGL*GLLGQE
Trigger: TTCCTGCCCCAGGAGCCCCAAGAGCCCAGCCGGATA...CTGGCGGGGATAGCACCGTTTATTAAGAAAAATCAAGACAAAGACCACAGGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp ATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTGGCAGGGTCTTGCCTACATCTCATaGAAAGAACTGCTCAATTTC +
Preference number: 5 (lower is better)
Translates to: IELEVRTSTASGLLLWQGLAYIS*KELLNF
Trigger: GAAATTGAGCAGTTCTTTCAATGAGATGTAGGCAAG...ACCCTGCCAGAGCAGGAGGCCACTGGCTGTGCTGGTCCGAACCTCCAGCTCGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp CCTCCTGTGGTCTTTGTCTTGATTTTTCTTAATAAACGGTGCTATCCCCGCCAGTTCCAAAGCTGCGTCTaGTCTCGTGGGGTCCCTGCC +
Preference number: 5 (lower is better)
Translates to: PPVVFVLIFLNKRCYPRQFQSCV*SRGVPA
Trigger: GGCAGGGACCCCACGAGACAAGACGCAGCTTTGGAA...CTGGCGGGGATAGCACCGTTTATTAAGAAAAATCAAGACAAAGACCACAGGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS-3UTR CAA 90 bp CCTCCTGTGGTCTTTGTCTTGATTTTTCTTAATAAACGGTGCTATCCCCGCCAGTTCAAGACGGGCACCTaGTCTTCAGGTAGGTCCTGG +
Preference number: 5 (lower is better)
Translates to: PPVVFVLIFLNKRCYPRQFKTGT*SSGRSW
Trigger: CCAGGACCTACCTGAAGACAAGGTGCCCGTCTTGAA...CTGGCGGGGATAGCACCGTTTATTAAGAAAAATCAAGACAAAGACCACAGGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp ATTATTATGAATTTTTGTAAGAAACCGAGGCGATGCCACGCTTTGCTGCTACCGCACAGAATCTTCAGCTaGGGGTCTCTGGGGAGACTG +
Preference number: 5 (lower is better)
Translates to: IIMNFCKKPRRCHALLLPHRIFS*GSLGRL
Trigger: CAGTCTCCCCAGAGACCCCAAGCTGAAGATTCTGTG...CGGTAGCAGCAAAGCGTGGCATCGCCTCGGTTTCTTACAAAAATTCATAATAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS-3UTR CAA 90 bp CCTCCTGTGGTCTTTGTCTTGATTTTTCTTAATAAACGGTGCTATCCCCGCCAGCCTACCACTGCTACTTaGGTTTCTTGCCTACATCTC +
Preference number: 5 (lower is better)
Translates to: PPVVFVLIFLNKRCYPRQPTTAT*VSCLHL
Trigger: GAGATGTAGGCAAGAAACCAAAGTAGCAGTGGTAGG...CTGGCGGGGATAGCACCGTTTATTAAGAAAAATCAAGACAAAGACCACAGGAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000344642.7
CDS GCA 72 bp GATGCGGCGTGCGAGCGCAGCAGCAGCCCGTCCCCCTaGCACGTCTGCCCGCACAGTTCCGCCAGGTCGGCT +
Preference number: 6 (lower is better)
Translates to: DAACERSSSPSP*HVCPHSSARSA
Trigger: AGCCGACCTGGCGGAACTGTGCGGGCAGACGTGGCAGGGGGACGGGCTGCTGCTGCGCTCGCACGCCGCATC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 72 bp GAAGCGGAACTGGAAGCGGATCCGGTCGCCGGGGGCTaGCGCCTGCACCCAGAGCCCGCAGTCGGTGTCCGG +
Preference number: 6 (lower is better)
Translates to: EAELEADPVAGG*RLHPEPAVGVR
Trigger: CCGGACACCGACTGCGGGCTCTGGGTGCAGGCGGCAGCCCCCGGCGACCGGATCCGCTTCCAGTTCCGCTTC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 72 bp GTCGGTGTCCGGAGCCACGAAGTAGAACCTGCGCGATaGGGCGTGCGAGCGCAGCAGCAGCCCGTCCCCCTG +
Preference number: 6 (lower is better)
Translates to: VGVRSHEVEPAR*GVRAQQQPVPL
Trigger: CAGGGGGACGGGCTGCTGCTGCGCTCGCACGCCGCATCGCGCAGGTTCTACTTCGTGGCTCCGGACACCGAC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 72 bp GCCCGCAGTCGGTGTCCGGAGCCACGAAGTAGAACCTaGGCGATGCGGCGTGCGAGCGCAGCAGCAGCCCGT +
Preference number: 6 (lower is better)
Translates to: ARSRCPEPRSRT*AMRRASAAAAR
Trigger: ACGGGCTGCTGCTGCGCTCGCACGCCGCATCGCGCAGGTTCTACTTCGTGGCTCCGGACACCGACTGCGGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 72 bp TGCGAGCGCAGCAGCAGCCCGTCCCCCTGCCACGTCTaGCCGCACAGTTCCGCCAGGTCGGCTGTCTCCAAA +
Preference number: 6 (lower is better)
Translates to: CERSSSPSPCHV*PHSSARSAVSK
Trigger: TTTGGAGACAGCCGACCTGGCGGAACTGTGCGGGCAGACGTGGCAGGGGGACGGGCTGCTGCTGCGCTCGCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS CCA 72 bp AGAGGCCACGGGCACCAGGTTGCCAGGCCAGCCAGCTaGGAGAGCAACAGCACCAGAGGAGGCCCAGGAGGA +
Preference number: 6 (lower is better)
Translates to: RGHGHQVARPAS*ESNSTRGGPGG
Trigger: TCCTCCTGGGCCTCCTCTGGTGCTGTTGCTCTCCCAGCTGGCTGGCCTGGCAACCTGGTGCCCGTGGCCTCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000484271.1
CDS TCA 72 bp GGAAGTAGGCACCACAAGGTCCCAGACGGAAAGAGGTaGCTTCGCCCACGAAGTCCACGCGGGGCTGGCGGC +
Preference number: 6 (lower is better)
Translates to: GSRHHKVPDGKR*LRPRSPRGAGG
Trigger: GCCGCCAGCCCCGCGTGGACTTCGTGGGCGAAGTCACCTCTTTCCGTCTGGGACCTTGTGGTGCCTACTTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS CAA 72 bp CGCACAGTTCCGCCAGGTCGGCTGTCTCCAAAGCAGTaGCAGTCAGGGCGGCTGCCCCCAGCAAGAGCAACC +
Preference number: 6 (lower is better)
Translates to: RTVPPGRLSPKQ*QSGRLPPARAT
Trigger: GGTTGCTCTTGCTGGGGGCAGCCGCCCTGACTGCAACTGCTTTGGAGACAGCCGACCTGGCGGAACTGTGCG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS CAA 90 bp ACGTCTGCCCGCACAGTTCCGCCAGGTCGGCTGTCTCCAAAGCAGTaGCAGTCAGGGCGGCTGCCCCCAGCAAGAGCAACCTTTGGGGCA +
Preference number: 6 (lower is better)
Translates to: TSARTVPPGRLSPKQ*QSGRLPPARATFGA
Trigger: TGCCCCAAAGGTTGCTCTTGCTGGGGGCAGCCGCCCTGACTGCAACTGCTTTGGAGACAGCCGACCTGGCGGAACTGTGCGGGCAGACGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 72 bp AGGAGCCCTGGTCACTGCCATCGCCACAGTTGTCCATaGCCCAGGGGTCACACACGAGGCTTGAGGGGATGC +
Preference number: 6 (lower is better)
Translates to: RSPGHCHRHSCP*PRGHTRGLRGC
Trigger: GCATCCCCTCAAGCCTCGTGTGTGACCCCTGGGGCATGGACAACTGTGGCGATGGCAGTGACCAGGGCTCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 72 bp CTCTGCAGTCAGCTGGTGACCAGGAGCCCTGGTCACTaGCATCGCCACAGTTGTCCATGCCCCAGGGGTCAC +
Preference number: 6 (lower is better)
Translates to: LCSQLVTRSPGH*HRHSCPCPRGH
Trigger: GTGACCCCTGGGGCATGGACAACTGTGGCGATGGCAGTGACCAGGGCTCCTGGTCACCAGCTGACTGCAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 72 bp GTCGGCTGTCTCCAAAGCAGTTGCAGTCAGGGCGGCTaGCCCCAGCAAGAGCAACCTTTGGGGCAACTGCAG +
Preference number: 6 (lower is better)
Translates to: VGCLQSSCSQGG*PQQEQPLGQLQ
Trigger: CTGCAGTTGCCCCAAAGGTTGCTCTTGCTGGGGGCAGCCGCCCTGACTGCAACTGCTTTGGAGACAGCCGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 72 bp CCCAGGGGTCACACACGAGGCTTGAGGGGATGCACCTaGCATTCTGGCAGCGGAAGTAGGCACCACAAGGTC +
Preference number: 6 (lower is better)
Translates to: PRGHTRGLRGCT*HSGSGSRHHKV
Trigger: GACCTTGTGGTGCCTACTTCCGCTGCCAGAATGGCAGGTGCATCCCCTCAAGCCTCGTGTGTGACCCCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 72 bp GCGGCTGCCCCCAGCAAGAGCAACCTTTGGGGCAACTaGAGAAGACAACAAGCCTCCATCCAGGCTCTGCTG +
Preference number: 6 (lower is better)
Translates to: AAAPSKSNLWGN*RRQQASIQALL
Trigger: CAGCAGAGCCTGGATGGAGGCTTGTTGTCTTCTGCAGTTGCCCCAAAGGTTGCTCTTGCTGGGGGCAGCCGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS CAA 72 bp AGGGCTTCACTCAGTGGAGCCTTCCAAAGCTGCGTCTaGTCTCGTGGGGTCCCTGCCTGCTGGGGAACTCCT +
Preference number: 6 (lower is better)
Translates to: RASLSGAFQSCV*SRGVPACWGTP
Trigger: AGGAGTTCCCCAGCAGGCAGGGACCCCACGAGACAAGACGCAGCTTTGGAAGGCTCCACTGAGTGAAGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS GCA 72 bp TTCCAAAGCTGCGTCTTGTCTCGTGGGGTCCCTGCCTaGTGGGGAACTCCTCTCAGCTGCAATCCAGAGGGA +
Preference number: 6 (lower is better)
Translates to: FQSCVLSRGVPA*WGTPLSCNPEG
Trigger: TCCCTCTGGATTGCAGCTGAGAGGAGTTCCCCAGCAGGCAGGGACCCCACGAGACAAGACGCAGCTTTGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000344642.7
ENST00000484271.1
ENST00000543870.1
CDS CCA 72 bp AGGGATCTGGAGGTATGGGCATCTGTACTTCCTGTCTaGCTGGGCACCGGAGAGGGACCTCTGCAGTCAGCT +
Preference number: 6 (lower is better)
Translates to: RDLEVWASVLPV*LGTGEGPLQSA
Trigger: AGCTGACTGCAGAGGTCCCTCTCCGGTGCCCAGCCAGACAGGAAGTACAGATGCCCATACCTCCAGATCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS CAA 72 bp AAACGGTGCTATCCCCGCCAGGGGCCTCCTGAGTCTTaGATGAGGGCTTCACTCAGTGGAGCCTTCCAAAGC +
Preference number: 6 (lower is better)
Translates to: KRCYPRQGPPES*MRASLSGAFQS
Trigger: GCTTTGGAAGGCTCCACTGAGTGAAGCCCTCATCAAAGACTCAGGAGGCCCCTGGCGGGGATAGCACCGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1
CDS CAA 90 bp TTTCTTAATAAACGGTGCTATCCCCGCCAGGGGCCTCCTGAGTCTTaGATGAGGGCTTCACTCAGTGGAGCCTTCCAAAGCTGCGTCTTG +
Preference number: 6 (lower is better)
Translates to: FLNKRCYPRQGPPES*MRASLSGAFQSCVL
Trigger: CAAGACGCAGCTTTGGAAGGCTCCACTGAGTGAAGCCCTCATCAAAGACTCAGGAGGCCCCTGGCGGGGATAGCACCGTTTATTAAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000344642.7
ENST00000543870.1