Pregenerated sensors for LCN9 (Homo sapiens)
Ensembl gene IDs: ENSG00000148386Ensembl transcript IDs: ENST00000277526.7, ENST00000430290.6, ENST00000554343.1, ENST00000619315.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TATTTTGTGAGCCAAGTCCGTACTTTTCGCAGGTTTCTTCAAATCTaGTCAGGAAGGAGGGTTCCAGCTATGGGACCCGTGCATAGAGCG | + |
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Preference number: 5 (lower is better) Translates to: YFVSQVRTFRRFLQI*SGRRVPAMGPVHRA Trigger: CGCTCTATGCACGGGTCCCATAGCTGGAACCCTCCTTCCTGAGCAGATTTGAAGAAACCTGCGAAAAGTACGGACTTGGCTCACAAAATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000430290.6 ENST00000554343.1 |
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| CDS TCA 90 bp | CTTGGAGTAGCAGGGATCTTTGTTGGTCAAGTCGATGATATTTTGTaGGCCAAGTCCGTACTTTTCGCAGGTTTCATAGAGCGCCAGCGT | + |
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Preference number: 5 (lower is better) Translates to: LGVAGIFVGQVDDIL*AKSVLFAGFIERQR Trigger: ACGCTGGCGCTCTATGAAACCTGCGAAAAGTACGGACTTGGCTCACAAAATATCATCGACTTGACCAACAAAGATCCCTGCTACTCCAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000277526.7 ENST00000619315.1 |
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| CDS GCA 90 bp | CCACACACTCCCCCTGCACCATGTATTCGAAATCAAATATTAGGCTaGCGTTCTTCAAGTGTTCAATATTCCGGACGAAGACCCTCAGGT | + |
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Preference number: 5 (lower is better) Translates to: PHTPPAPCIRNQILG*RSSSVQYSGRRPSG Trigger: ACCTGAGGGTCTTCGTCCGGAATATTGAACACTTGAAGAACGGCAGCCTAATATTTGATTTCGAATACATGGTGCAGGGGGAGTGTGTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000277526.7 ENST00000430290.6 ENST00000619315.1 |
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| CDS TCA 90 bp | CTTGGAGTAGCAGGGATCTTTGTTGGTCAAGTCGATGATATTTTGTaGGCCAAGTCCGTACTTTTCGCAGGTTTCTTCAAATCTGCTCAG | + |
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Preference number: 5 (lower is better) Translates to: LGVAGIFVGQVDDIL*AKSVLFAGFFKSAQ Trigger: CTGAGCAGATTTGAAGAAACCTGCGAAAAGTACGGACTTGGCTCACAAAATATCATCGACTTGACCAACAAAGATCCCTGCTACTCCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000430290.6 ENST00000554343.1 |
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| CDS GCA 72 bp | GACCCTTCCCGGGAGCTGGTGGAGGGAGCACAGCCCTaGGGACCTCGGGTTTCAGACCTCGGGCTCCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: DPSRELVEGAQP*GPRVSDLGLQA Trigger: AGCCTGGAGCCCGAGGTCTGAAACCCGAGGTCCGCAGGGCTGTGCTCCCTCCACCAGCTCCCGGGAAGGGTC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554343.1 |
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| CDS CCA 72 bp | TGCCCGTCCCGAGTCGCAGCTCACGCATGGGAGGCCTaGGCGGGCTCCTGTAATGCTTGGAGTAGCAGGGAT | + |
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Preference number: 6 (lower is better) Translates to: CPSRVAAHAWEA*AGSCNAWSSRD Trigger: ATCCCTGCTACTCCAAGCATTACAGGAGCCCGCCCAGGCCTCCCATGCGTGAGCTGCGACTCGGGACGGGCA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554343.1 |
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| CDS GCA 72 bp | AGCCAAGTCCGTACTTTTCGCAGGTTTCTTCAAATCTaGTCAGGAAGGAGGGTTCCAGCTATGGGACCCGTG | + |
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Preference number: 6 (lower is better) Translates to: SQVRTFRRFLQI*SGRRVPAMGPV Trigger: CACGGGTCCCATAGCTGGAACCCTCCTTCCTGAGCAGATTTGAAGAAACCTGCGAAAAGTACGGACTTGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000430290.6 ENST00000554343.1 |
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| CDS TCA 72 bp | GCTTGGAGTAGCAGGGATCTTTGTTGGTCAAGTCGATaGTATTTTGTGAGCCAAGTCCGTACTTTTCGCAGG | + |
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Preference number: 6 (lower is better) Translates to: AWSSRDLCWSSR*YFVSQVRTFRR Trigger: CCTGCGAAAAGTACGGACTTGGCTCACAAAATATCATCGACTTGACCAACAAAGATCCCTGCTACTCCAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000277526.7 ENST00000430290.6 ENST00000554343.1 ENST00000619315.1 |
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| CDS TCA 72 bp | GCAGGGATCTTTGTTGGTCAAGTCGATGATATTTTGTaGGCCAAGTCCGTACTTTTCGCAGGTTTCATAGAG | + |
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Preference number: 6 (lower is better) Translates to: AGIFVGQVDDIL*AKSVLFAGFIE Trigger: CTCTATGAAACCTGCGAAAAGTACGGACTTGGCTCACAAAATATCATCGACTTGACCAACAAAGATCCCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000277526.7 ENST00000619315.1 |
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| CDS GCA 72 bp | CCCCCTGCACCATGTATTCGAAATCAAATATTAGGCTaGCGTTCTTCAAGTGTTCAATATTCCGGACGAAGA | + |
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Preference number: 6 (lower is better) Translates to: PPAPCIRNQILG*RSSSVQYSGRR Trigger: TCTTCGTCCGGAATATTGAACACTTGAAGAACGGCAGCCTAATATTTGATTTCGAATACATGGTGCAGGGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000277526.7 ENST00000430290.6 ENST00000619315.1 |
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| CDS TCA 72 bp | GCAGGGATCTTTGTTGGTCAAGTCGATGATATTTTGTaGGCCAAGTCCGTACTTTTCGCAGGTTTCTTCAAA | + |
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Preference number: 6 (lower is better) Translates to: AGIFVGQVDDIL*AKSVLFAGFFK Trigger: TTTGAAGAAACCTGCGAAAAGTACGGACTTGGCTCACAAAATATCATCGACTTGACCAACAAAGATCCCTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000430290.6 ENST00000554343.1 |
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