Pregenerated sensors for LCN2 (Homo sapiens)
Ensembl gene IDs: ENSG00000148346Ensembl transcript IDs: ENST00000277480.7, ENST00000372998.1, ENST00000373017.5, ENST00000470902.5, ENST00000487719.1, ENST00000488391.5, ENST00000494317.1
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCCATCAGCGGGGTGGCCTGGGGAGCAGCTGCATGGGTGGCACTGTaGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCG | + |
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Preference number: 1 (lower is better) Translates to: SISGVAWGAAAWVAL*GGSPSSLNGVRAGA Trigger: CGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCCCACAGTGCCACCCATGCAGCTGCTCCCCAGGCCACCCCGCTGATGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR GCA 90 bp | TGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCAGGCGCTGTGGTGGCTaGTGGGCCTGGCAGGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: WGGSPSSLNGVRAGAAAGRRCGG*WAWQGW Trigger: CCACCCCTGCCAGGCCCAGCAGCCACCACAGCGCCT...GCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCCCA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR GCA 90 bp | GTGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGTGGTGTTCGGGCTGGTaGGGCAGCTGGCGGCACCTG | + |
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Preference number: 4 (lower is better) Translates to: VGRVSQLPQWCSGWCGSWWCSGW*GSWRHL Trigger: CAGGTGCCGCCAGCTGCCGCACCAGCCCGAACACCA...CCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCCCAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CCA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACGGCTGGTGCGGCAGCTaGCGGCACCTGTGCACTCAG | + |
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Preference number: 4 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHGWCGS*RHLCTQ Trigger: CTGAGTGCACAGGTGCCGCCAGCTGCCGCACCAGCC...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR TCA 90 bp | TGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCTGGGATCAGGTCTaGGGTGGAGTCCTGGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: WGGSPSSLNGVRAGAAAGGWDQV*GGVLGL Trigger: CAGGCCCAGGACTCCACCTCAGACCTGATCCCAGCC...GCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCCCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR GCA 90 bp | GGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGGCTGCAGAGGGACCTTaGTCAGAGGTGGGGCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: GRVSQLPQWCSGWCGSWRAAEGP*SEVGLG Trigger: TCCCAGCCCCACCTCTGAGCAAGGTCCCTCTGCAGC...CCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CCA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACAGGAAGCAGGCGCTGTaGTGGCTGCTGGGCCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHRKQAL*WLLGLA Trigger: TGCCAGGCCCAGCAGCCACCACAGCGCCTGCTTCCT...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CCA 90 bp | TGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCCAATGGTGTTCGGGCTaGTGCGGCAGCTGGCGGCAC | + |
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Preference number: 4 (lower is better) Translates to: WGGSPSSLNGVRAGAAAGQWCSG*CGSWRH Trigger: GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTG...GCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCCCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CCA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACTGGGGAGCAGCTGCATaGGTGGCACTGTGGGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHWGAAA*VALWGG Trigger: CCCTCCCCACAGTGCCACCCATGCAGCTGCTCCCCA...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CCA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACATCAGCGGGGTGGCCTaGGGAGCAGCTGCATGGGTG | + |
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Preference number: 4 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHISGVA*GAAAWV Trigger: CACCCATGCAGCTGCTCCCCAGGCCACCCCGCTGAT...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CCA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACGCTCCATCAGCGGGGTaGCCTGGGGAGCAGCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHAPSAG*PGEQLH Trigger: ATGCAGCTGCTCCCCAGGCCACCCCGCTGATGGAGC...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR GCA 90 bp | GGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGAGCTGGCGGCACCTGTaGACTCAGCCGTCGATACAC | + |
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Preference number: 4 (lower is better) Translates to: GRVSQLPQWCSGWCGSWRSWRHL*TQPSIH Trigger: GTGTATCGACGGCTGAGTGCACAGGTGCCGCCAGCT...CCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CCA 90 bp | TGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCTCCCAGCTCCCTCAATaGTGTTCGGGCTGGTGCGGC | + |
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Preference number: 4 (lower is better) Translates to: WGGSPSSLNGVRAGAAAGSQLPQ*CSGWCG Trigger: GCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGA...GCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CCA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACGAGCAGCTGCATGGGTaGCACTGTGGGGAGGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHEQLHG*HCGEGL Trigger: GAGACCCTCCCCACAGTGCCACCCATGCAGCTGCTC...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR TCA 90 bp | TGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGAGACCTAGGGGCATaGTTTCAGGGCCGAGGAAGC | + |
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Preference number: 4 (lower is better) Translates to: WGGSPSSLNGVRAGAAAGGDLGA*FQGRGS Trigger: GCTTCCTCGGCCCTGAAATCATGCCCCTAGGTCTCC...GCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCCCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR GCA 90 bp | GGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGTCCTGGAAGTTCTGCTaGAGAGGGACCTTGCTCAGA | + |
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Preference number: 4 (lower is better) Translates to: GRVSQLPQWCSGWCGSWRSWKFC*RGTLLR Trigger: TCTGAGCAAGGTCCCTCTGCAGCAGAACTTCCAGGA...CCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR GCA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACGCTGGTTGTAGTTGGTaGTCACCACTCGGACGAGGT | + |
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Preference number: 4 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHAGCSW*SPLGRG Trigger: ACCTCGTCCGAGTGGTGAGCACCAACTACAACCAGC...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CCA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACGCCGGGCTGGCAACCTaGAACAAAAGTCCTGATCCA | + |
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Preference number: 4 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHAGLAT*NKSPDP Trigger: TGGATCAGGACTTTTGTTCCAGGTTGCCAGCCCGGC...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CCA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACGTGAACTCGCCGGGCTaGCAACCTGGAACAAAAGTC | + |
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Preference number: 4 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHVNSPG*QPGTKV Trigger: GACTTTTGTTCCAGGTTGCCAGCCCGGCGAGTTCAC...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CCA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACCAGCCGTCGATACACTaGTCGATTGGGACAGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHQPSIH*SIGTGK Trigger: CTTCCCTGTCCCAATCGACCAGTGTATCGACGGCTG...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR GCA 90 bp | TGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCTTGTCCTGGAAGTTCTaGTGCAGAGGGACCTTGCTC | + |
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Preference number: 4 (lower is better) Translates to: WGGSPSSLNGVRAGAAAGLSWKF*CRGTLL Trigger: GAGCAAGGTCCCTCTGCAGCAGAACTTCCAGGACAA...GCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CCA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACCATGCTGGTTGTAGTTaGTGCTCACCACTCGGACGA | + |
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Preference number: 4 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHHAGCS*CSPLGR Trigger: TCGTCCGAGTGGTGAGCACCAACTACAACCAGCATG...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR GCA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACGAGAATTGCATTCCCTaGCAGGCCTACCACATACCA | + |
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Preference number: 4 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHENCIP*QAYHIP Trigger: TGGTATGTGGTAGGCCTGGCAGGGAATGCAATTCTC...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR GCA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACGTCTTCTCTGAGAATTaGATTCCCTGCCAGGCCTAC | + |
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Preference number: 4 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHVFSEN*IPCQAY Trigger: GTAGGCCTGGCAGGGAATGCAATTCTCAGAGAAGAC...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CCA 90 bp | GTGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGTGGAATTGGTTGTCCTaGAAGTTCTGCTGCAGAGGG | + |
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Preference number: 4 (lower is better) Translates to: VGRVSQLPQWCSGWCGSWWNWLS*KFCCRG Trigger: CCCTCTGCAGCAGAACTTCCAGGACAACCAATTCCA...CCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCCCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CCA 90 bp | TGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGATACACTGGTCGATTaGGACAGGGAAGACGATGTG | + |
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Preference number: 4 (lower is better) Translates to: WGGSPSSLNGVRAGAAAGDTLVD*DREDDV Trigger: CACATCGTCTTCCCTGTCCCAATCGACCAGTGTATC...GCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR TCA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACGGTCTTTGTCTTCTCTaGGAATTGCATTCCCTGCCA | + |
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Preference number: 4 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHGLCLL*ELHSLP Trigger: TGGCAGGGAATGCAATTCTCAGAGAAGACAAAGACC...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR TCA 90 bp | GGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCTGGAACAAAAGTCCTaGTCCAGTAGTCACACTTCT | + |
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Preference number: 4 (lower is better) Translates to: GRVSQLPQWCSGWCGSWRLEQKS*SSSHTS Trigger: AGAAGTGTGACTACTGGATCAGGACTTTTGTTCCAG...CCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR TCA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACATTTGGAGAAGCGGATaGAGTTCTCCTTTAGTTCCG | + |
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Preference number: 4 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHIWRSG*SSPLVP Trigger: CGGAACTAAAGGAGAACTTCATCCGCTTCTCCAAAT...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CCA 90 bp | TGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCTCAGCTCATAGATGGTaGCATACATCTTTTGCGGGT | + |
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Preference number: 4 (lower is better) Translates to: WGGSPSSLNGVRAGAAAGSAHRW*HTSFAG Trigger: ACCCGCAAAAGATGTATGCCACCATCTATGAGCTGA...GCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CCA 90 bp | GTGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCTTTCAGCTCATAGATaGTGGCATACATCTTTTGCG | + |
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Preference number: 4 (lower is better) Translates to: VGRVSQLPQWCSGWCGSWLSAHR*WHTSFA Trigger: CGCAAAAGATGTATGCCACCATCTATGAGCTGAAAG...CCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CAA 90 bp | TGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCTGCTGCAGAGGGACCTaGCTCAGAGGTGGGGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: WGGSPSSLNGVRAGAAAGCCRGT*LRGGAG Trigger: CCCAGCCCCACCTCTGAGCAAGGTCCCTCTGCAGCA...GCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCCCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS GCA 90 bp | TGGCCTCCCACAAGCCCCCTCGCAGCCGCCCAGCCACACTCACTGTaGACTCAGCCGTCGATACACTGGTCGATTGGGACAGGGAAGACG | + |
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Preference number: 5 (lower is better) Translates to: WPPTSPLAAAQPHSL*TQPSIHWSIGTGKT Trigger: CGTCTTCCCTGTCCCAATCGACCAGTGTATCGACGGCTGAGTGCACAGTGAGTGTGGCTGGGCGGCTGCGAGGGGGCTTGTGGGAGGCCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000494317.1 |
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| CDS-3UTR CAA 90 bp | GGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGGGGAGGCCCAGAGATTaGGAGAAGCGGATGAAGTTC | + |
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Preference number: 5 (lower is better) Translates to: GRVSQLPQWCSGWCGSWRGRPRD*EKRMKF Trigger: GAACTTCATCCGCTTCTCCAAATCTCTGGGCCTCCC...CCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CAA 90 bp | GGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCCACTTCCCCTGGAATaGGTTGTCCTGGAAGTTCTG | + |
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Preference number: 5 (lower is better) Translates to: GRVSQLPQWCSGWCGSWRPLPLE*VVLEVL Trigger: CAGAACTTCCAGGACAACCAATTCCAGGGGAAGTGG...CCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CAA 90 bp | GTGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGTTCCCCTGGAATTGGTaGTCCTGGAAGTTCTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: VGRVSQLPQWCSGWCGSWFPWNW*SWKFCC Trigger: GCAGCAGAACTTCCAGGACAACCAATTCCAGGGGAA...CCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCCCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CAA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACCGATACACTGGTCGATaGGGACAGGGAAGACGATGT | + |
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Preference number: 5 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHRYTGR*GQGRRC Trigger: ACATCGTCTTCCCTGTCCCAATCGACCAGTGTATCG...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS TCA 90 bp | CGAGGTGAACGACAGGATCCCTCAGCTTTGGCCATCCCTTGCCTGTaGCGTCAGTCTGACTCTCACACCCCCAGGAGATGTCGGCCCTCA | + |
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Preference number: 5 (lower is better) Translates to: RGERQDPSALAIPCL*RQSDSHTPRRCRPS Trigger: TGAGGGCCGACATCTCCTGGGGGTGTGAGAGTCAGACTGACGTCACAGGCAAGGGATGGCCAAAGCTGAGGGATCCTGTCGTTCACCTCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000470902.5 ENST00000487719.1 |
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| CDS CCA 90 bp | GCAGCTGGCGGCACCCTGGACAGAGGTGGATATGAGGGTGATGGGTaGGGAAATGGGAGGCACCCGAGATGGGGACAGCAGAATAAAGAC | + |
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Preference number: 5 (lower is better) Translates to: AAGGTLDRGGYEGDG*GNGRHPRWGQQNKD Trigger: GTCTTTATTCTGCTGTCCCCATCTCGGGTGCCTCCCATTTCCCCACCCATCACCCTCATATCCACCTCTGTCCAGGGTGCCGCCAGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494317.1 |
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| CDS-3UTR CAA 90 bp | TGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGTGGCATACATCTTTaGCGGGTCTTTGTCTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: WGGSPSSLNGVRAGAAAGGGIHL*RVFVFS Trigger: AGAGAAGACAAAGACCCGCAAAAGATGTATGCCACC...GCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS TCA 90 bp | ACAGGATCCCTCAGCTTTGGCCATCCCTTGCCTGTGACGTCAGTCTaGCTCTCACACCCCCAGGAGATGTCGGCCCTCACTTGGTTGTCC | + |
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Preference number: 5 (lower is better) Translates to: TGSLSFGHPLPVTSV*LSHPQEMSALTWLS Trigger: GGACAACCAAGTGAGGGCCGACATCTCCTGGGGGTGTGAGAGTCAGACTGACGTCACAGGCAAGGGATGGCCAAAGCTGAGGGATCCTGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000470902.5 ENST00000487719.1 |
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| CDS GCA 90 bp | GCTGGGCCTCTGGCAGGGACAACGACTCCCTCTGTGCCTTCCTTGTaGTGTTTCTTTCTTCTGATTGCCCTGTATGTGGGCCGGTGGCCT | + |
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Preference number: 5 (lower is better) Translates to: AGPLAGTTTPSVPSL*CFFLLIALYVGRWP Trigger: AGGCCACCGGCCCACATACAGGGCAATCAGAAGAAAGAAACAGCACAAGGAAGGCACAGAGGGAGTCGTTGTCCCTGCCAGAGGCCCAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373017.5 |
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| CDS CCA 90 bp | AATTCCGGGCAGAACAGCGAGGTGAACGACAGGATCCCTCAGCTTTaGCCATCCCTTGCCTGTGACGTCAGTCTGACTCTCACACCCCCA | + |
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Preference number: 5 (lower is better) Translates to: NSGQNSEVNDRIPQL*PSLACDVSLTLTPP Trigger: TGGGGGTGTGAGAGTCAGACTGACGTCACAGGCAAGGGATGGCCAAAGCTGAGGGATCCTGTCGTTCACCTCGCTGTTCTGCCCGGAATT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000470902.5 ENST00000487719.1 |
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| CDS-3UTR CAA 90 bp | AGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGCGGCACATCTTTTGCGGGTCTTaGTCTTCTCTGAGAATTGCA | + |
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Preference number: 5 (lower is better) Translates to: RVSQLPQWCSGWCGSWRHIFCGS*SSLRIA Trigger: TGCAATTCTCAGAGAAGACAAAGACCCGCAAAAGAT...GTGCCGCCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS-3UTR CAA 90 bp | GTGGGGAGGGTCTCCCAGCTCCCTCAATGGTGTTCGGGCTGGTGCGGCAGCTGGGAAGTACTCCCTGTTTaGAGAAACTTTCTTGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: VGRVSQLPQWCSGWCGSWEVLPV*RNFLEE Trigger: TTCTTCAAGAAAGTTTCTCAAAACAGGGAGTACTTC...CCAGCTGCCGCACCAGCCCGAACACCATTGAGGGAGCTGGGAGACCCTCCCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000277480.7 |
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| CDS CCA 90 bp | GTAACTCTTAATGTTGCCCAGCGTGAACTCGCCGGGCTGGCAACCTaGAACAAAAGTCCTGATCCAGTAGTCACACTTCTGGGCCTTCTC | + |
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Preference number: 5 (lower is better) Translates to: VTLNVAQRELAGLAT*NKSPDPVVTLLGLL Trigger: GAGAAGGCCCAGAAGTGTGACTACTGGATCAGGACTTTTGTTCCAGGTTGCCAGCCCGGCGAGTTCACGCTGGGCAACATTAAGAGTTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000372998.1 |
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| CDS TCA 90 bp | AGACGATGTGGTTTTCAGGGAGGCCCAGAGATTTGGAGAAGCGGATaGAGTTCTCCTTTAGTTCCGAAGTCAGCTCCTTGGTTCTCCCGT | + |
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Preference number: 5 (lower is better) Translates to: RRCGFQGGPEIWRSG*SSPLVPKSAPWFSR Trigger: ACGGGAGAACCAAGGAGCTGACTTCGGAACTAAAGGAGAACTTCATCCGCTTCTCCAAATCTCTGGGCCTCCCTGAAAACCACATCGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000277480.7 ENST00000372998.1 ENST00000373017.5 ENST00000470902.5 ENST00000488391.5 ENST00000494317.1 |
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| CDS TCA 90 bp | GCTCATAGATGGTGGCATACATCTTTTGCGGGTCTTTGTCTTCTCTaGGAATTGCATTCCCTGCCAGGCCTACCACATACCACTTCCCCT | + |
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Preference number: 5 (lower is better) Translates to: AHRWWHTSFAGLCLL*ELHSLPGLPHTTSP Trigger: AGGGGAAGTGGTATGTGGTAGGCCTGGCAGGGAATGCAATTCTCAGAGAAGACAAAGACCCGCAAAAGATGTATGCCACCATCTATGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000277480.7 ENST00000372998.1 ENST00000373017.5 |
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| CDS GCA 90 bp | GATGGTGGCATACATCTTTTGCGGGTCTTTGTCTTCTCTGAGAATTaGATTCCCTGCCAGGCCTACCACATACCACTTCCCCTGGAATTG | + |
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Preference number: 5 (lower is better) Translates to: DGGIHLLRVFVFSEN*IPCQAYHIPLPLEL Trigger: CAATTCCAGGGGAAGTGGTATGTGGTAGGCCTGGCAGGGAATGCAATTCTCAGAGAAGACAAAGACCCGCAAAAGATGTATGCCACCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000277480.7 ENST00000372998.1 ENST00000373017.5 |
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| CDS CCA 90 bp | GTAACTCTTAATGTTGCCCAGCGTGAACTCGCCGGGCTGGCAACCTaGAACAAAAGTCCTGATCCAGTAGTCACACTTCTTTTTCCTTGG | + |
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Preference number: 5 (lower is better) Translates to: VTLNVAQRELAGLAT*NKSPDPVVTLLFPW Trigger: CCAAGGAAAAAGAAGTGTGACTACTGGATCAGGACTTTTGTTCCAGGTTGCCAGCCCGGCGAGTTCACGCTGGGCAACATTAAGAGTTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000488391.5 |
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| CDS GCA 90 bp | ATACATCTTTTGCGGGTCTTTGTCTTCTCTGAGAATTGCATTCCCTaGCAGGCCTACCACATACCACTTCCCCTGGAATTGGTTGTCCTG | + |
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Preference number: 5 (lower is better) Translates to: IHLLRVFVFSENCIP*QAYHIPLPLELVVL Trigger: CAGGACAACCAATTCCAGGGGAAGTGGTATGTGGTAGGCCTGGCAGGGAATGCAATTCTCAGAGAAGACAAAGACCCGCAAAAGATGTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000277480.7 ENST00000372998.1 ENST00000373017.5 |
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| CDS GCA 90 bp | GTGCATGTCCATCCCCACCACTGTCTGTGTGTCTGCATGGAAATGTaGTATAAACGTTGCTCTAAGGAACAGAGGAAGGATGAACACAGA | + |
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Preference number: 5 (lower is better) Translates to: VHVHPHHCLCVCMEM*YKRCSKEQRKDEHR Trigger: TCTGTGTTCATCCTTCCTCTGTTCCTTAGAGCAACGTTTATAGCACATTTCCATGCAGACACACAGACAGTGGTGGGGATGGACATGCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000487719.1 |
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| CDS CCA 90 bp | GTAACTCTTAATGTTGCCCAGCGTGAACTCGCCGGGCTGGCAACCTaGAACAAAAGTCCTGATCCAGTAGTCACACTTCTTTTTCCTAAA | + |
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Preference number: 5 (lower is better) Translates to: VTLNVAQRELAGLAT*NKSPDPVVTLLFPK Trigger: TTTAGGAAAAAGAAGTGTGACTACTGGATCAGGACTTTTGTTCCAGGTTGCCAGCCCGGCGAGTTCACGCTGGGCAACATTAAGAGTTAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000277480.7 ENST00000373017.5 |
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| CDS GCA 72 bp | ACAAGCCCCCTCGCAGCCGCCCAGCCACACTCACTGTaGACTCAGCCGTCGATACACTGGTCGATTGGGACA | + |
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Preference number: 6 (lower is better) Translates to: TSPLAAAQPHSL*TQPSIHWSIGT Trigger: TGTCCCAATCGACCAGTGTATCGACGGCTGAGTGCACAGTGAGTGTGGCTGGGCGGCTGCGAGGGGGCTTGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000494317.1 |
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| CDS CCA 72 bp | GGCACCCTGGACAGAGGTGGATATGAGGGTGATGGGTaGGGAAATGGGAGGCACCCGAGATGGGGACAGCAG | + |
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Preference number: 6 (lower is better) Translates to: GTLDRGGYEGDG*GNGRHPRWGQQ Trigger: CTGCTGTCCCCATCTCGGGTGCCTCCCATTTCCCCACCCATCACCCTCATATCCACCTCTGTCCAGGGTGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494317.1 |
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| CDS GCA 72 bp | GAGATGTCGGCCCTCACTTGGTTGTCCTGGAAGTTCTaGTGCAGAGGGACCTTGCTCAGAGGTGGGGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: EMSALTWLSWKF*CRGTLLRGGAG Trigger: CCCAGCCCCACCTCTGAGCAAGGTCCCTCTGCAGCAGAACTTCCAGGACAACCAAGTGAGGGCCGACATCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000470902.5 ENST00000487719.1 |
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| CDS TCA 72 bp | CTCAGCTTTGGCCATCCCTTGCCTGTGACGTCAGTCTaGCTCTCACACCCCCAGGAGATGTCGGCCCTCACT | + |
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Preference number: 6 (lower is better) Translates to: LSFGHPLPVTSV*LSHPQEMSALT Trigger: AGTGAGGGCCGACATCTCCTGGGGGTGTGAGAGTCAGACTGACGTCACAGGCAAGGGATGGCCAAAGCTGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000470902.5 ENST00000487719.1 |
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| CDS GCA 72 bp | ATGTCGGCCCTCACTTGGTTGTCCTGGAAGTTCTGCTaGAGAGGGACCTTGCTCAGAGGTGGGGCTGGGATC | + |
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Preference number: 6 (lower is better) Translates to: MSALTWLSWKFC*RGTLLRGGAGI Trigger: GATCCCAGCCCCACCTCTGAGCAAGGTCCCTCTGCAGCAGAACTTCCAGGACAACCAAGTGAGGGCCGACAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000470902.5 ENST00000487719.1 |
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| CDS TCA 72 bp | CGACAGGATCCCTCAGCTTTGGCCATCCCTTGCCTGTaGCGTCAGTCTGACTCTCACACCCCCAGGAGATGT | + |
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Preference number: 6 (lower is better) Translates to: RQDPSALAIPCL*RQSDSHTPRRC Trigger: ACATCTCCTGGGGGTGTGAGAGTCAGACTGACGTCACAGGCAAGGGATGGCCAAAGCTGAGGGATCCTGTCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000470902.5 ENST00000487719.1 |
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| CDS CCA 72 bp | CAGAACAGCGAGGTGAACGACAGGATCCCTCAGCTTTaGCCATCCCTTGCCTGTGACGTCAGTCTGACTCTC | + |
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Preference number: 6 (lower is better) Translates to: QNSEVNDRIPQL*PSLACDVSLTL Trigger: GAGAGTCAGACTGACGTCACAGGCAAGGGATGGCCAAAGCTGAGGGATCCTGTCGTTCACCTCGCTGTTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000470902.5 ENST00000487719.1 |
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| CDS GCA 72 bp | CTGGCAGGGACAACGACTCCCTCTGTGCCTTCCTTGTaGTGTTTCTTTCTTCTGATTGCCCTGTATGTGGGC | + |
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Preference number: 6 (lower is better) Translates to: LAGTTTPSVPSL*CFFLLIALYVG Trigger: GCCCACATACAGGGCAATCAGAAGAAAGAAACAGCACAAGGAAGGCACAGAGGGAGTCGTTGTCCCTGCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373017.5 |
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| CDS CAA 90 bp | ATTGGGACAGGGAAGACGATGTGGTTTTCAGGGAGGCCCAGAGATTaGGAGAAGCGGATGAAGTTCTCCTTTAGTTCCGAAGTCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: IGTGKTMWFSGRPRD*EKRMKFSFSSEVSS Trigger: GGAGCTGACTTCGGAACTAAAGGAGAACTTCATCCGCTTCTCCAAATCTCTGGGCCTCCCTGAAAACCACATCGTCTTCCCTGTCCCAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000277480.7 ENST00000372998.1 ENST00000373017.5 ENST00000470902.5 ENST00000488391.5 ENST00000494317.1 |
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| CDS TCA 72 bp | GGTTTTCAGGGAGGCCCAGAGATTTGGAGAAGCGGATaGAGTTCTCCTTTAGTTCCGAAGTCAGCTCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: GFQGGPEIWRSG*SSPLVPKSAPW Trigger: CCAAGGAGCTGACTTCGGAACTAAAGGAGAACTTCATCCGCTTCTCCAAATCTCTGGGCCTCCCTGAAAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000277480.7 ENST00000372998.1 ENST00000373017.5 ENST00000470902.5 ENST00000488391.5 ENST00000494317.1 |
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| CDS GCA 72 bp | TTGCGGGTCTTTGTCTTCTCTGAGAATTGCATTCCCTaGCAGGCCTACCACATACCACTTCCCCTGGAATTG | + |
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Preference number: 6 (lower is better) Translates to: LRVFVFSENCIP*QAYHIPLPLEL Trigger: CAATTCCAGGGGAAGTGGTATGTGGTAGGCCTGGCAGGGAATGCAATTCTCAGAGAAGACAAAGACCCGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000277480.7 ENST00000372998.1 ENST00000373017.5 |
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| CDS TCA 72 bp | TGGTGGCATACATCTTTTGCGGGTCTTTGTCTTCTCTaGGAATTGCATTCCCTGCCAGGCCTACCACATACC | + |
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Preference number: 6 (lower is better) Translates to: WWHTSFAGLCLL*ELHSLPGLPHT Trigger: GGTATGTGGTAGGCCTGGCAGGGAATGCAATTCTCAGAGAAGACAAAGACCCGCAAAAGATGTATGCCACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000277480.7 ENST00000372998.1 ENST00000373017.5 |
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| CDS CAA 72 bp | GGGAAGACGATGTGGTTTTCAGGGAGGCCCAGAGATTaGGAGAAGCGGATGAAGTTCTCCTTTAGTTCCGAA | + |
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Preference number: 6 (lower is better) Translates to: GKTMWFSGRPRD*EKRMKFSFSSE Trigger: TTCGGAACTAAAGGAGAACTTCATCCGCTTCTCCAAATCTCTGGGCCTCCCTGAAAACCACATCGTCTTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000277480.7 ENST00000372998.1 ENST00000373017.5 ENST00000470902.5 ENST00000488391.5 ENST00000494317.1 |
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| CDS CAA 90 bp | GTAGCTCTTGTCTTCTTTCAGCTCATAGATGGTGGCATACATCTTTaGCGGGTCTTTGTCTTCTCTGAGAATTGCATTCCCTGCCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: VALVFFQLIDGGIHL*RVFVFSENCIPCQA Trigger: GGCCTGGCAGGGAATGCAATTCTCAGAGAAGACAAAGACCCGCAAAAGATGTATGCCACCATCTATGAGCTGAAAGAAGACAAGAGCTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000277480.7 ENST00000372998.1 ENST00000373017.5 |
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| CDS CAA 72 bp | GTCTTCTTTCAGCTCATAGATGGTGGCATACATCTTTaGCGGGTCTTTGTCTTCTCTGAGAATTGCATTCCC | + |
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Preference number: 6 (lower is better) Translates to: VFFQLIDGGIHL*RVFVFSENCIP Trigger: GGGAATGCAATTCTCAGAGAAGACAAAGACCCGCAAAAGATGTATGCCACCATCTATGAGCTGAAAGAAGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000277480.7 ENST00000372998.1 ENST00000373017.5 |
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