Pregenerated sensors for LCN1 (Homo sapiens)
Ensembl gene IDs: ENSG00000160349Ensembl transcript IDs: ENST00000263598.6, ENST00000371781.4
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AAGCTCTTTATGGAGAACCAGGAGAGGGGGCGCAGGGCAGGGGGAAGGCGGGGGCCATGTCCCTGTGAATaGCGGAGGTGCTGGATGGTG | + |
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Preference number: 2 (lower is better) Translates to: KLFMENQERGRRAGGRRGPCPCE*RRCWMV Trigger: CACCATCCAGCACCTCCGTCATTCACAGGGACATGG...CCCCCGCCTTCCCCCTGCCCTGCGCCCCCTCTCCTGGTTCTCCATAAAGAGCTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| 3UTR-3UTR TCA 90 bp | AAGCTCTTTATGGAGAACCAGGAGAGGGGGCGCAGGGCAGGGGGAAGGCGGGGGTTTTCCATGTCCCTGTaGATGACGGAGGTGCTGGAT | + |
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Preference number: 2 (lower is better) Translates to: KLFMENQERGRRAGGRRGFSMSL*MTEVLD Trigger: ATCCAGCACCTCCGTCATTCACAGGGACATGGAAAA...CCCCCGCCTTCCCCCTGCCCTGCGCCCCCTCTCCTGGTTCTCCATAAAGAGCTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| 3UTR GCA 72 bp | TTCCATGTCCCTGTGAATGACGGAGGTGCTGGATGGTaGCGTCCTTGGGCTGCTGAGGAGCCAAGGTGTCCC | + |
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Preference number: 3 (lower is better) Translates to: FHVPVNDGGAGW*RPWAAEEPRCP Trigger: GGGACACCTTGGCTCCTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCATTCACAGGGACATGGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| 3UTR CCA 72 bp | TTTTTCCATGTCCCTGTGAATGACGGAGGTGCTGGATaGTGCCGTCCTTGGGCTGCTGAGGAGCCAAGGTGT | + |
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Preference number: 3 (lower is better) Translates to: FFHVPVNDGGAG*CRPWAAEEPRC Trigger: ACACCTTGGCTCCTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCATTCACAGGGACATGGAAAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR TCA 90 bp | GTGAATGACGGAGGTGCTGGATGGTGCCGTCCTTGGGCTGCTGAGGAGCCAAGGCCGTCCTTGGGCTGCTaGGGAGCCAAGGTGTCCCCC | + |
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Preference number: 4 (lower is better) Translates to: VNDGGAGWCRPWAAEEPRPSLGC*GAKVSP Trigger: GGGGGACACCTTGGCTCCTCAGCAGCCCAAGGACGG...CCTTGGCTCCTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCATTCAC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000263598.6 |
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| CDS-3UTR GCA 90 bp | AAGCTCTTTATGGAGAACCAGGAGAGGGGGCGCAGGGCAGGGGGAAGGCGGGGGGGAGGTGCTGGATGGTaGCGTCCTTGGGCTGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: KLFMENQERGRRAGGRRGGGAGW*RPWAAE Trigger: CTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCC...CCCCCGCCTTCCCCCTGCCCTGCGCCCCCTCTCCTGGTTCTCCATAAAGAGCTT 66% GC, longest homopolymer 7 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR GCA 90 bp | AAGCTCTTTATGGAGAACCAGGAGAGGGGGCGCAGGGCAGGGGGAAGGCGGGGGGGTGGTAGGAAGGGGTaGAGCCAGCCGCGTTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: KLFMENQERGRRAGGRRGGGRKG*SQPRSA Trigger: TGCAGAACGCGGCTGGCTGCACCCCTTCCTACCACC...CCCCCGCCTTCCCCCTGCCCTGCGCCCCCTCTCCTGGTTCTCCATAAAGAGCTT 66% GC, longest homopolymer 7 nt, total homopolymer stretches 21 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR CCA 90 bp | AAGCTCTTTATGGAGAACCAGGAGAGGGGGCGCAGGGCAGGGGGAAGGCGGGGGGGATGGTGCCGTCCTTaGGCTGCTGAGGAGCCAAGG | + |
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Preference number: 4 (lower is better) Translates to: KLFMENQERGRRAGGRRGGWCRP*AAEEPR Trigger: CCTTGGCTCCTCAGCAGCCCAAGGACGGCACCATCC...CCCCCGCCTTCCCCCTGCCCTGCGCCCCCTCTCCTGGTTCTCCATAAAGAGCTT 66% GC, longest homopolymer 7 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR CCA 90 bp | AAGCTCTTTATGGAGAACCAGGAGAGGGGGCGCAGGGCAGGGGGAAGGCGGGGGGACGGAGGTGCTGGATaGTGCCGTCCTTGGGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: KLFMENQERGRRAGGRRGDGGAG*CRPWAA Trigger: AGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTC...CCCCCGCCTTCCCCCTGCCCTGCGCCCCCTCTCCTGGTTCTCCATAAAGAGCTT 66% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR GCA 90 bp | AAGCTCTTTATGGAGAACCAGGAGAGGGGGCGCAGGGCAGGGGGAAGGCGGGGGCAGCCAGCCGCGTTCTaGAGGGGTGGGGAGCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: KLFMENQERGRRAGGRRGQPAAF*RGGELF Trigger: AAAAAGCTCCCCACCCCTGCAGAACGCGGCTGGCTG...CCCCCGCCTTCCCCCTGCCCTGCGCCCCCTCTCCTGGTTCTCCATAAAGAGCTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR TCA 90 bp | CATGTCCCTGTGAATGACGGAGGTGCTGGATGGTGCCGTCCTTGGGCTGCTGAGCCGTCCTTGGGCTGCTaGGGAGCCAAGGTGTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: HVPVNDGGAGWCRPWAAEPSLGC*GAKVSP Trigger: AGGGGACACCTTGGCTCCTCAGCAGCCCAAGGACGG...CTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCATTCACAGGGACATG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000371781.4 |
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| CDS-3UTR GCA 90 bp | AAGCTCTTTATGGAGAACCAGGAGAGGGGGCGCAGGGCAGGGGGAAGGCGGGGGGAGCAGGTTTCGCTCTaGCTGGGGATGAGGATGCTC | + |
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Preference number: 4 (lower is better) Translates to: KLFMENQERGRRAGGRRGEQVSL*LGMRML Trigger: GAGCATCCTCATCCCCAGGCAGAGCGAAACCTGCTC...CCCCCGCCTTCCCCCTGCCCTGCGCCCCCTCTCCTGGTTCTCCATAAAGAGCTT 63% GC, longest homopolymer 6 nt, total homopolymer stretches 20 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR GCA 90 bp | ATGACGGAGGTGCTGGATGGTGCCGTCCTTGGGCTGCTGAGGAGCCAAGGTGTCGGAGGTGCTGGATGGTaGCGTCCTTGGGCTGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: MTEVLDGAVLGLLRSQGVGGAGW*RPWAAE Trigger: CTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCC...GACACCTTGGCTCCTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCAT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR CCA 90 bp | ATGACGGAGGTGCTGGATGGTGCCGTCCTTGGGCTGCTGAGGAGCCAAGGTGTCGACGGAGGTGCTGGATaGTGCCGTCCTTGGGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: MTEVLDGAVLGLLRSQGVDGGAG*CRPWAA Trigger: AGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTC...GACACCTTGGCTCCTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCAT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR GCA 90 bp | GTGAATGACGGAGGTGCTGGATGGTGCCGTCCTTGGGCTGCTGAGGAGCCAAGGCAGCCAGCCGCGTTCTaGAGGGGTGGGGAGCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: VNDGGAGWCRPWAAEEPRQPAAF*RGGELF Trigger: AAAAAGCTCCCCACCCCTGCAGAACGCGGCTGGCTG...CCTTGGCTCCTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCATTCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR GCA 90 bp | CATGTCCCTGTGAATGACGGAGGTGCTGGATGGTGCCGTCCTTGGGCTGCTGAGGGTGGTAGGAAGGGGTaGAGCCAGCCGCGTTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: HVPVNDGGAGWCRPWAAEGGRKG*SQPRSA Trigger: TGCAGAACGCGGCTGGCTGCACCCCTTCCTACCACC...CTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCATTCACAGGGACATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR TCA 90 bp | GTCCCTGTGAATGACGGAGGTGCTGGATGGTGCCGTCCTTGGGCTGCTGAGGAGCCATGTCCCTGTGAATaGCGGAGGTGCTGGATGGTG | + |
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Preference number: 4 (lower is better) Translates to: VPVNDGGAGWCRPWAAEEPCPCE*RRCWMV Trigger: CACCATCCAGCACCTCCGTCATTCACAGGGACATGG...CTCCTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCATTCACAGGGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR GCA 90 bp | GTGAATGACGGAGGTGCTGGATGGTGCCGTCCTTGGGCTGCTGAGGAGCCAAGGTGTATGCCACGTGCTTaGCCCCGTCGGCCGTGTATT | + |
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Preference number: 4 (lower is better) Translates to: VNDGGAGWCRPWAAEEPRCMPRA*PRRPCI Trigger: AATACACGGCCGACGGGGGCAAGCACGTGGCATACA...CCTTGGCTCCTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCATTCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR GCA 90 bp | GTCCCTGTGAATGACGGAGGTGCTGGATGGTGCCGTCCTTGGGCTGCTGAGGAGGAGCAGGTTTCGCTCTaGCTGGGGATGAGGATGCTC | + |
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Preference number: 4 (lower is better) Translates to: VPVNDGGAGWCRPWAAEEEQVSL*LGMRML Trigger: GAGCATCCTCATCCCCAGGCAGAGCGAAACCTGCTC...CTCCTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCATTCACAGGGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR CCA 90 bp | GTGAATGACGGAGGTGCTGGATGGTGCCGTCCTTGGGCTGCTGAGGAGCCAAGGCGCGTTCTGCAGGGGTaGGGAGCTTTTTCCATGTCC | + |
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Preference number: 4 (lower is better) Translates to: VNDGGAGWCRPWAAEEPRRVLQG*GAFSMS Trigger: GGACATGGAAAAAGCTCCCCACCCCTGCAGAACGCG...CCTTGGCTCCTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCATTCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR CCA 90 bp | ATGACGGAGGTGCTGGATGGTGCCGTCCTTGGGCTGCTGAGGAGCCAAGGTGTCCGCGTTCTGCAGGGGTaGGGAGCTTTTTCCATGTCC | + |
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Preference number: 4 (lower is better) Translates to: MTEVLDGAVLGLLRSQGVRVLQG*GAFSMS Trigger: GGACATGGAAAAAGCTCCCCACCCCTGCAGAACGCG...GACACCTTGGCTCCTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR TCA 90 bp | CATGTCCCTGTGAATGACGGAGGTGCTGGATGGTGCCGTCCTTGGGCTGCTGAGCCATGTCCCTGTGAATaGCGGAGGTGCTGGATGGTG | + |
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Preference number: 4 (lower is better) Translates to: HVPVNDGGAGWCRPWAAEPCPCE*RRCWMV Trigger: CACCATCCAGCACCTCCGTCATTCACAGGGACATGG...CTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCATTCACAGGGACATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR TCA 90 bp | GTGAATGACGGAGGTGCTGGATGGTGCCGTCCTTGGGCTGCTGAGGAGCCAAGGTTTTCCATGTCCCTGTaGATGACGGAGGTGCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: VNDGGAGWCRPWAAEEPRFSMSL*MTEVLD Trigger: ATCCAGCACCTCCGTCATTCACAGGGACATGGAAAA...CCTTGGCTCCTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCATTCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS-3UTR TCA 90 bp | CATGTCCCTGTGAATGACGGAGGTGCTGGATGGTGCCGTCCTTGGGCTGCTGAGTTTTCCATGTCCCTGTaGATGACGGAGGTGCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: HVPVNDGGAGWCRPWAAEFSMSL*MTEVLD Trigger: ATCCAGCACCTCCGTCATTCACAGGGACATGGAAAA...CTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCATTCACAGGGACATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000263598.6 ENST00000371781.4 |
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| CDS CCA 90 bp | TTCCATGTCCCTGTGAATGACGGAGGTGCTGGATGGTGCCGTCCTTaGGCTGCTGAGGAGCCAAGGTGTCCCCCTAATCGCTCCCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: FHVPVNDGGAGWCRP*AAEEPRCPPNRSLE Trigger: CTCCAGGGAGCGATTAGGGGGACACCTTGGCTCCTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCATTCACAGGGACATGGAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000263598.6 |
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| CDS GCA 90 bp | GGGAGCTTTTTCCATGTCCCTGTGAATGACGGAGGTGCTGGATGGTaGCGTCCTTGGGCTGCTGAGGAGCCAAGGTGTCCCCCTAATCGC | + |
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Preference number: 5 (lower is better) Translates to: GSFFHVPVNDGGAGW*RPWAAEEPRCPPNR Trigger: GCGATTAGGGGGACACCTTGGCTCCTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCATTCACAGGGACATGGAAAAAGCTCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000263598.6 |
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| CDS CCA 72 bp | CCTGTGAATGACGGAGGTGCTGGATGGTGCCGTCCTTaGGCTGCTGAGGAGCCAAGGTGTCCCCCTAATCGC | + |
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Preference number: 6 (lower is better) Translates to: PVNDGGAGWCRP*AAEEPRCPPNR Trigger: GCGATTAGGGGGACACCTTGGCTCCTCAGCAGCCCAAGGACGGCACCATCCAGCACCTCCGTCATTCACAGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000263598.6 |
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