Pregenerated sensors for LCE2C (Homo sapiens)
Ensembl gene IDs: ENSG00000187180Ensembl transcript IDs: ENST00000368783.1
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AAGAAGACTTGCAATTGGGGTGTTACATCAAGCACGAAGTTCTTCCAGGAAAGCGCCGTAGCAGGTTCTTaGCCATTCAGTCCCAAGAGC | + |
|
Preference number: 2 (lower is better) Translates to: KKTCNWGVTSSTKFFQESAVAGS*PFSPKS Trigger: GCTCTTGGGACTGAATGGCCAAGAACCTGCTACGGC...GCTTTCCTGGAAGAACTTCGTGCTTGATGTAACACCCCAATTGCAAGTCTTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368783.1 |
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| CDS-3UTR CCA 90 bp | ATCCATCAGGCCGTAGCAGGTTCTTGGCCATTCAGTCCCAAGAGCTCTTCTGTAGCCGTAGCAGGTTCTTaGCCATTCAGTCCCAAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: IHQAVAGSWPFSPKSSSVAVAGS*PFSPKS Trigger: GCTCTTGGGACTGAATGGCCAAGAACCTGCTACGGC...TACAGAAGAGCTCTTGGGACTGAATGGCCAAGAACCTGCTACGGCCTGATGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368783.1 |
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| CDS-3UTR CAA 90 bp | TATCCATCAGGCCGTAGCAGGTTCTTGGCCATTCAGTCCCAAGAGCTCTTCTGTGGCCGTAGCAGGTTCTaGGCCATTCAGTCCCAAGAG | + |
|
Preference number: 5 (lower is better) Translates to: YPSGRSRFLAIQSQELFCGRSRF*AIQSQE Trigger: CTCTTGGGACTGAATGGCCAAGAACCTGCTACGGCC...ACAGAAGAGCTCTTGGGACTGAATGGCCAAGAACCTGCTACGGCCTGATGGATA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368783.1 |
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| CDS-3UTR CAA 90 bp | TATCCATCAGGCCGTAGCAGGTTCTTGGCCATTCAGTCCCAAGAGCTCTTCTGTGGAGGAAAAGAAGACTaGCAATTGGGGTGTTACATC | + |
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Preference number: 5 (lower is better) Translates to: YPSGRSRFLAIQSQELFCGGKED*QLGCYI Trigger: GATGTAACACCCCAATTGCAAGTCTTCTTTTCCTCC...ACAGAAGAGCTCTTGGGACTGAATGGCCAAGAACCTGCTACGGCCTGATGGATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368783.1 |
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