Pregenerated sensors for LCE1C (Homo sapiens)
Ensembl gene IDs: ENSG00000197084Ensembl transcript IDs: ENST00000607093.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGCGTGGGAGGGTAGCCACAAAGGTGAGGTCCAAGGCCAGTGAATaGAGATCCAGGAGAGGATCTGAGTTTCTGGACTCCAGGGAAAAG | + |
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Preference number: 1 (lower is better) Translates to: ERGRVATKVRSKASE*RSRRGSEFLDSREK Trigger: CTTTTCCCTGGAGTCCAGAAACTCAGATCCTCTCCTGGATCTCCATTCACTGGCCTTGGACCTCACCTTTGTGGCTACCCTCCCACGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000607093.1 |
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| 3UTR TCA 90 bp | GAAAAGATATGCTCTTGGCAAGTTCAGAGCTTTCCCTTGGACCTGTaGGCCTCTCAGGCAGGCCTAGTAGGAGAAGGGGGATGTCCTTGG | + |
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Preference number: 1 (lower is better) Translates to: EKICSWQVQSFPLDL*ASQAGLVGEGGCPW Trigger: CCAAGGACATCCCCCTTCTCCTACTAGGCCTGCCTGAGAGGCTCACAGGTCCAAGGGAAAGCTCTGAACTTGCCAAGAGCATATCTTTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000607093.1 |
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| 3UTR CCA 90 bp | GGTCCAAGGCCAGTGAATGGAGATCCAGGAGAGGATCTGAGTTTCTaGACTCCAGGGAAAAGATATGCTCTTGGCAAGTTCAGAGCTTTC | + |
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Preference number: 1 (lower is better) Translates to: GPRPVNGDPGEDLSF*TPGKRYALGKFRAF Trigger: GAAAGCTCTGAACTTGCCAAGAGCATATCTTTTCCCTGGAGTCCAGAAACTCAGATCCTCTCCTGGATCTCCATTCACTGGCCTTGGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000607093.1 |
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| 3UTR CAA 90 bp | CCTGTGAGCCTCTCAGGCAGGCCTAGTAGGAGAAGGGGGATGTCCTaGGCAGTTTGCGGTCCTGGATTCTGCTCTTCTAGGCTCAGGGTC | + |
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Preference number: 2 (lower is better) Translates to: PVSLSGRPSRRRGMS*AVCGPGFCSSRLRV Trigger: GACCCTGAGCCTAGAAGAGCAGAATCCAGGACCGCAAACTGCCAAGGACATCCCCCTTCTCCTACTAGGCCTGCCTGAGAGGCTCACAGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000607093.1 |
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| 3UTR-3UTR GCA 90 bp | AGTTCAGAGCTTTCCCTTGGACCTGTGAGCCTCTCAGGCAGGCCTAGTAGGAGATGCGGTCCTGGATTCTaGTCTTCTAGGCTCAGGGTC | + |
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Preference number: 2 (lower is better) Translates to: SSELSLGPVSLSGRPSRRCGPGF*SSRLRV Trigger: GACCCTGAGCCTAGAAGAGCAGAATCCAGGACCGCA...TCTCCTACTAGGCCTGCCTGAGAGGCTCACAGGTCCAAGGGAAAGCTCTGAACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000607093.1 |
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| 3UTR-3UTR CCA 90 bp | AGGTCCAAGGCCAGTGAATGGAGATCCAGGAGAGGATCTGAGTTTCTGGACTCCGAAGGGGGATGTCCTTaGCAGTTTGCGGTCCTGGAT | + |
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Preference number: 2 (lower is better) Translates to: RSKASEWRSRRGSEFLDSEGGCP*QFAVLD Trigger: ATCCAGGACCGCAAACTGCCAAGGACATCCCCCTTC...GGAGTCCAGAAACTCAGATCCTCTCCTGGATCTCCATTCACTGGCCTTGGACCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000607093.1 |
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| 3UTR-3UTR CCA 90 bp | AGGGTAGCCACAAAGGTGAGGTCCAAGGCCAGTGAATGGAGATCCAGGAGAGGAGAAAAGATATGCTCTTaGCAAGTTCAGAGCTTTCCC | + |
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Preference number: 2 (lower is better) Translates to: RVATKVRSKASEWRSRRGEKICS*QVQSFP Trigger: GGGAAAGCTCTGAACTTGCCAAGAGCATATCTTTTC...TCCTCTCCTGGATCTCCATTCACTGGCCTTGGACCTCACCTTTGTGGCTACCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000607093.1 |
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| 3UTR CCA 72 bp | TCTCAGGCAGGCCTAGTAGGAGAAGGGGGATGTCCTTaGCAGTTTGCGGTCCTGGATTCTGCTCTTCTAGGC | + |
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Preference number: 3 (lower is better) Translates to: SQAGLVGEGGCP*QFAVLDSALLG Trigger: GCCTAGAAGAGCAGAATCCAGGACCGCAAACTGCCAAGGACATCCCCCTTCTCCTACTAGGCCTGCCTGAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000607093.1 |
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| 3UTR-3UTR CAA 90 bp | GGATCTGAGTTTCTGGACTCCAGGGAAAAGATATGCTCTTGGCAAGTTCAGAGCGATGTCCTTGGCAGTTaGCGGTCCTGGATTCTGCTC | + |
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Preference number: 3 (lower is better) Translates to: GSEFLDSREKICSWQVQSDVLGS*RSWILL Trigger: GAGCAGAATCCAGGACCGCAAACTGCCAAGGACATC...GCTCTGAACTTGCCAAGAGCATATCTTTTCCCTGGAGTCCAGAAACTCAGATCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000607093.1 |
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| 3UTR-3UTR CAA 90 bp | AGTTTCTGGACTCCAGGGAAAAGATATGCTCTTGGCAAGTTCAGAGCTTTCCCTAGAAGGGGGATGTCCTaGGCAGTTTGCGGTCCTGGA | + |
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Preference number: 3 (lower is better) Translates to: SFWTPGKRYALGKFRAFPRRGMS*AVCGPG Trigger: TCCAGGACCGCAAACTGCCAAGGACATCCCCCTTCT...AGGGAAAGCTCTGAACTTGCCAAGAGCATATCTTTTCCCTGGAGTCCAGAAACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000607093.1 |
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| 3UTR CAA 72 bp | CTCTCAGGCAGGCCTAGTAGGAGAAGGGGGATGTCCTaGGCAGTTTGCGGTCCTGGATTCTGCTCTTCTAGG | + |
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Preference number: 4 (lower is better) Translates to: LSGRPSRRRGMS*AVCGPGFCSSR Trigger: CCTAGAAGAGCAGAATCCAGGACCGCAAACTGCCAAGGACATCCCCCTTCTCCTACTAGGCCTGCCTGAGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000607093.1 |
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