Pregenerated sensors for LCA10 (Homo sapiens)
Ensembl gene IDs: ENSG00000273769Ensembl transcript IDs: ENST00000618311.4
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAGGGCAGGGAGTCCCGGCCCGGTCCGGCCCGCGGTAACCGGCGTTaGTGCCGGAGCCCCACCCATGCCGGGCGTCGGGCTCCGGGCACC | + |
|
Preference number: 5 (lower is better) Translates to: QGRESRPGPARGNRR*CRSPTHAGRRAPGT Trigger: GGTGCCCGGAGCCCGACGCCCGGCATGGGTGGGGCTCCGGCAGCAACGCCGGTTACCGCGGGCCGGACCGGGCCGGGACTCCCTGCCCTG 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS CCA 90 bp | CTGCCGCAGAGCCAGGGGCTCCTCCCCGGAGGCGTAGGGCGCCTCTaGAGCCCGTTTCCACAGGCTCCAGGCGCTCAGGATCCCAGCGAT | + |
|
Preference number: 5 (lower is better) Translates to: LPQSQGLLPGGVGRL*SPFPQAPGAQDPSD Trigger: ATCGCTGGGATCCTGAGCGCCTGGAGCCTGTGGAAACGGGCTCCAGAGGCGCCCTACGCCTCCGGGGAGGAGCCCCTGGCTCTGCGGCAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS GCA 90 bp | GGGCCTGGCCTGAGGGCTCCTACAGTGAGCAGGGTGCCCAGATTGTaGCCCCAATCGGCCTCTCCCAGGTCCGAGCCCTTTCCACCACTG | + |
|
Preference number: 5 (lower is better) Translates to: GPGLRAPTVSRVPRL*PQSASPRSEPFPPL Trigger: CAGTGGTGGAAAGGGCTCGGACCTGGGAGAGGCCGATTGGGGGCACAATCTGGGCACCCTGCTCACTGTAGGAGCCCTCAGGCCAGGCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS GCA 90 bp | GGAGAACAGAGAAAGACACGTCTGGCTGAGCCCACCCCGCCTGCCTaGTGGCACTTCCTTACTGCCCCACTGTCGTCTGTGGCTTCTGCG | + |
|
Preference number: 5 (lower is better) Translates to: GEQRKTRLAEPTPPA*WHFLTAPLSSVASA Trigger: CGCAGAAGCCACAGACGACAGTGGGGCAGTAAGGAAGTGCCAGCAGGCAGGCGGGGTGGGCTCAGCCAGACGTGTCTTTCTCTGTTCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS CCA 90 bp | CCCCGCCTGCCTGCTGGCACTTCCTTACTGCCCCACTGTCGTCTGTaGCTTCTGCGTCTTCTGCATGCTCATCACAGGGTCAGAGTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: PRLPAGTSLLPHCRL*LLRLLHAHHRVRVW Trigger: CCAGACTCTGACCCTGTGATGAGCATGCAGAAGACGCAGAAGCCACAGACGACAGTGGGGCAGTAAGGAAGTGCCAGCAGGCAGGCGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS CCA 90 bp | GAACAGAGAAAGACACGTCTGGCTGAGCCCACCCCGCCTGCCTGCTaGCACTTCCTTACTGCCCCACTGTCGTCTGTGGCTTCTGCGTCT | + |
|
Preference number: 5 (lower is better) Translates to: EQRKTRLAEPTPPAC*HFLTAPLSSVASAS Trigger: AGACGCAGAAGCCACAGACGACAGTGGGGCAGTAAGGAAGTGCCAGCAGGCAGGCGGGGTGGGCTCAGCCAGACGTGTCTTTCTCTGTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS GCA 90 bp | TGCCTGCTGGCACTTCCTTACTGCCCCACTGTCGTCTGTGGCTTCTaGGTCTTCTGCATGCTCATCACAGGGTCAGAGTCTGGGGCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: CLLALPYCPTVVCGF*VFCMLITGSESGAS Trigger: GGAAGCCCCAGACTCTGACCCTGTGATGAGCATGCAGAAGACGCAGAAGCCACAGACGACAGTGGGGCAGTAAGGAAGTGCCAGCAGGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS CCA 90 bp | CTGTGGCTTCTGCGTCTTCTGCATGCTCATCACAGGGTCAGAGTCTaGGGCTTCCCTTGTCCAGTCCACTGTGTCTATGAGGGCCCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: LWLLRLLHAHHRVRV*GFPCPVHCVYEGPS Trigger: GGAGGGGCCCTCATAGACACAGTGGACTGGACAAGGGAAGCCCCAGACTCTGACCCTGTGATGAGCATGCAGAAGACGCAGAAGCCACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS GCA 90 bp | GCACTTCCTTACTGCCCCACTGTCGTCTGTGGCTTCTGCGTCTTCTaGATGCTCATCACAGGGTCAGAGTCTGGGGCTTCCCTTGTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: ALPYCPTVVCGFCVF*MLITGSESGASLVQ Trigger: CTGGACAAGGGAAGCCCCAGACTCTGACCCTGTGATGAGCATGCAGAAGACGCAGAAGCCACAGACGACAGTGGGGCAGTAAGGAAGTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS GCA 90 bp | TTCCTTACTGCCCCACTGTCGTCTGTGGCTTCTGCGTCTTCTGCATaGTCATCACAGGGTCAGAGTCTGGGGCTTCCCTTGTCCAGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: FLTAPLSSVASASSA*SSQGQSLGLPLSSP Trigger: TGGACTGGACAAGGGAAGCCCCAGACTCTGACCCTGTGATGAGCATGCAGAAGACGCAGAAGCCACAGACGACAGTGGGGCAGTAAGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS GCA 90 bp | GCATGCACCTTGATCACCAAGTTCCCTTTCAAAGCTCGAAATGGCTaGACTGAGTGCTTTTCTGGGTGTGAGGGTGATGCGGCCTCGCAG | + |
|
Preference number: 5 (lower is better) Translates to: ACTLITKFPFKARNG*TECFSGCEGDAASQ Trigger: CTGCGAGGCCGCATCACCCTCACACCCAGAAAAGCACTCAGTGCAGCCATTTCGAGCTTTGAAAGGGAACTTGGTGATCAAGGTGCATGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS GCA 90 bp | CAAGAATTGTTAGACAGAATCAAACCAAACCAAAACCCAACTATGTaGTGTTTCCAAGCGCTACACCTGAGATATGAAGACACAGAAAGA | + |
|
Preference number: 5 (lower is better) Translates to: QELLDRIKPNQNPTM*CFQALHLRYEDTER Trigger: TCTTTCTGTGTCTTCATATCTCAGGTGTAGCGCTTGGAAACAGCACATAGTTGGGTTTTGGTTTGGTTTGATTCTGTCTAACAATTCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS GCA 72 bp | GAGTCCCGGCCCGGTCCGGCCCGCGGTAACCGGCGTTaGTGCCGGAGCCCCACCCATGCCGGGCGTCGGGCT | + |
|
Preference number: 6 (lower is better) Translates to: ESRPGPARGNRR*CRSPTHAGRRA Trigger: AGCCCGACGCCCGGCATGGGTGGGGCTCCGGCAGCAACGCCGGTTACCGCGGGCCGGACCGGGCCGGGACTC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS CAA 90 bp | GAAGGGCCTGGCCTGAGGGCTCCTACAGTGAGCAGGGTGCCCAGATaGTGCCCCCAATCGGCCTCTCCCAGGTCCGAGCCCTTTCCACCA | + |
|
Preference number: 6 (lower is better) Translates to: EGPGLRAPTVSRVPR*CPQSASPRSEPFPP Trigger: TGGTGGAAAGGGCTCGGACCTGGGAGAGGCCGATTGGGGGCACAATCTGGGCACCCTGCTCACTGTAGGAGCCCTCAGGCCAGGCCCTTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS GCA 72 bp | CTGAGGGCTCCTACAGTGAGCAGGGTGCCCAGATTGTaGCCCCAATCGGCCTCTCCCAGGTCCGAGCCCTTT | + |
|
Preference number: 6 (lower is better) Translates to: LRAPTVSRVPRL*PQSASPRSEPF Trigger: AAAGGGCTCGGACCTGGGAGAGGCCGATTGGGGGCACAATCTGGGCACCCTGCTCACTGTAGGAGCCCTCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS CCA 72 bp | AAGACACGTCTGGCTGAGCCCACCCCGCCTGCCTGCTaGCACTTCCTTACTGCCCCACTGTCGTCTGTGGCT | + |
|
Preference number: 6 (lower is better) Translates to: KTRLAEPTPPAC*HFLTAPLSSVA Trigger: AGCCACAGACGACAGTGGGGCAGTAAGGAAGTGCCAGCAGGCAGGCGGGGTGGGCTCAGCCAGACGTGTCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS GCA 72 bp | AGAAAGACACGTCTGGCTGAGCCCACCCCGCCTGCCTaGTGGCACTTCCTTACTGCCCCACTGTCGTCTGTG | + |
|
Preference number: 6 (lower is better) Translates to: RKTRLAEPTPPA*WHFLTAPLSSV Trigger: CACAGACGACAGTGGGGCAGTAAGGAAGTGCCAGCAGGCAGGCGGGGTGGGCTCAGCCAGACGTGTCTTTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS GCA 72 bp | GCCCCACTGTCGTCTGTGGCTTCTGCGTCTTCTGCATaGTCATCACAGGGTCAGAGTCTGGGGCTTCCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: APLSSVASASSA*SSQGQSLGLPL Trigger: CAAGGGAAGCCCCAGACTCTGACCCTGTGATGAGCATGCAGAAGACGCAGAAGCCACAGACGACAGTGGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS CCA 72 bp | CCTGCTGGCACTTCCTTACTGCCCCACTGTCGTCTGTaGCTTCTGCGTCTTCTGCATGCTCATCACAGGGTC | + |
|
Preference number: 6 (lower is better) Translates to: PAGTSLLPHCRL*LLRLLHAHHRV Trigger: GACCCTGTGATGAGCATGCAGAAGACGCAGAAGCCACAGACGACAGTGGGGCAGTAAGGAAGTGCCAGCAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||
| CDS GCA 72 bp | TTGATCACCAAGTTCCCTTTCAAAGCTCGAAATGGCTaGACTGAGTGCTTTTCTGGGTGTGAGGGTGATGCG | + |
|
Preference number: 6 (lower is better) Translates to: LITKFPFKARNG*TECFSGCEGDA Trigger: CGCATCACCCTCACACCCAGAAAAGCACTCAGTGCAGCCATTTCGAGCTTTGAAAGGGAACTTGGTGATCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000618311.4 |
||