RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LARP6 (Homo sapiens)

Ensembl gene IDs: ENSG00000166173

Ensembl transcript IDs: ENST00000299213.10, ENST00000344870.4, ENST00000559140.2, ENST00000559316.2, ENST00000560052.1

Found 320 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACCACTCAGGCTGCCAGAAGCCCAAGGAGAGCCCTGGGGCTGCCCTaGGGTACAGTGAGAAACCCTAAATGCCCTGACTTGATCACTATG +
Preference number: 1 (lower is better)
Translates to: TTQAARSPRRALGLP*GTVRNPKCPDLITM
Trigger: CATAGTGATCAAGTCAGGGCATTTAGGGTTTCTCACTGTACCCCAGGGCAGCCCCAGGGCTCTCCTTGGGCTTCTGGCAGCCTGAGTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR GCA 90 bp TGTGGGTCCTGGACTGTACACCCTCAGTATACGCCAAGCTGCCTTTaGTCAGTAAAATTCCCTGTGATGAGACACCACTCAGGCTGCCAG +
Preference number: 1 (lower is better)
Translates to: CGSWTVHPQYTPSCL*SVKFPVMRHHSGCQ
Trigger: CTGGCAGCCTGAGTGGTGTCTCATCACAGGGAATTTTACTGAGCAAAGGCAGCTTGGCGTATACTGAGGGTGTACAGTCCAGGACCCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR GCA 90 bp CAATGCTGTGGGTCCTGGACTGTACACCCTCAGTATACGCCAAGCTaGCTTTGCTCAGTAAAATTCCCTGTGATGAGACACCACTCAGGC +
Preference number: 1 (lower is better)
Translates to: QCCGSWTVHPQYTPS*LCSVKFPVMRHHSG
Trigger: GCCTGAGTGGTGTCTCATCACAGGGAATTTTACTGAGCAAAGGCAGCTTGGCGTATACTGAGGGTGTACAGTCCAGGACCCACAGCATTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CCA 90 bp GTAACCTTCCCAAGGTCACAAAATAGTGAGAGATTGGGGGTCAAATaGACTGACCTCAAGTCCTGCAGCCTTTGTCCATCCAGTGGTTCT +
Preference number: 1 (lower is better)
Translates to: VTFPRSQNSERLGVK*TDLKSCSLCPSSGS
Trigger: AGAACCACTGGATGGACAAAGGCTGCAGGACTTGAGGTCAGTCCATTTGACCCCCAATCTCTCACTATTTTGTGACCTTGGGAAGGTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR TCA 90 bp CTTAAAGAAAAGAAAGATGTCTCTGCTAAGCTCCTCAGGGCCTCATaGCATACCACCCACAGCTCTGTCAGACAGGCACAGACTTTTGTC +
Preference number: 1 (lower is better)
Translates to: LKEKKDVSAKLLRAS*HTTHSSVRQAQTFV
Trigger: GACAAAAGTCTGTGCCTGTCTGACAGAGCTGTGGGTGGTATGTCATGAGGCCCTGAGGAGCTTAGCAGAGACATCTTTCTTTTCTTTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR TCA 90 bp GGCCTTTCTCCCAGACTTTCTAATTCAGTGGGCCTAGGGTTGGCCTaGGAATCTGGATTTCTAATAAGTTCCCAGGTGAGATCAATGCTG +
Preference number: 1 (lower is better)
Translates to: GLSPRLSNSVGLGLA*ESGFLISSQVRSML
Trigger: CAGCATTGATCTCACCTGGGAACTTATTAGAAATCCAGATTCTCAGGCCAACCCTAGGCCCACTGAATTAGAAAGTCTGGGAGAAAGGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR TCA 90 bp AACGAAGCAAGCATGGTCCTTGAATTCACCGAGCTCCTATTCCTGTaGGGGAGACACAATGATAGAATCACAATTGTGGAAGGTGCTAGG +
Preference number: 1 (lower is better)
Translates to: NEASMVLEFTELLFL*GRHNDRITIVEGAR
Trigger: CCTAGCACCTTCCACAATTGTGATTCTATCATTGTGTCTCCCTCACAGGAATAGGAGCTCGGTGAATTCAAGGACCATGCTTGCTTCGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
3UTR TCA 90 bp CTCAAAGTCAGCACTCCCAGTTGGGTGTTTTATTATTTATTTACTTaGCAGGTAACATCGATTTGGTCCTACAAGACACCATGCTATAGG +
Preference number: 1 (lower is better)
Translates to: LKVSTPSWVFYYLFT*QVTSIWSYKTPCYR
Trigger: CCTATAGCATGGTGTCTTGTAGGACCAAATCGATGTTACCTGTCAAGTAAATAAATAATAAAACACCCAACTGGGAGTGCTGACTTTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR GCA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTaGACATATATGACCTTATTTAAGGAACATCTTCTTGTTATCCAC +
Preference number: 1 (lower is better)
Translates to: VVTNACKALFHSEST*TYMTLFKEHLLVIH
Trigger: GTGGATAACAAGAAGATGTTCCTTAAATAAGGTCATATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CCA 90 bp CAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTGGAGTGGTGAGATCAATGCTGTaGGTCCTGGACTGTACACCC +
Preference number: 2 (lower is better)
Translates to: QEELVKPRWPDGQGAGGVVRSML*VLDCTP
Trigger: GGGTGTACAGTCCAGGACCCACAGCATTGATCTCAC...CACTCCACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CCA 90 bp ACAGGCCAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTCCTTTGTCCATCCAGTaGTTCTCCAGCGTGCATCAG +
Preference number: 2 (lower is better)
Translates to: TGQEELVKPRWPDGQGAGPLSIQ*FSSVHQ
Trigger: CTGATGCACGCTGGAGAACCACTGGATGGACAAAGG...ACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTGGCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CCA 90 bp AGACATGGACATCGTAACAAAGCAATTCACAGGGAGATGATGAGGTTCACGGGGGCCCTGGGGCTGCCCTaGGGTACAGTGAGAAACCCT +
Preference number: 2 (lower is better)
Translates to: RHGHRNKAIHREMMRFTGALGLP*GTVRNP
Trigger: AGGGTTTCTCACTGTACCCCAGGGCAGCCCCAGGGC...CCCCGTGAACCTCATCATCTCCCTGTGAATTGCTTTGTTACGATGTCCATGTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CAA 90 bp CTGTGGGTCCTGGACTGTACACCCTCAGTATACGCCAAGCTGCCTTaGCTCAGTAAAATTCCCTGTGATGAGACACCACTCAGGCTGCCA +
Preference number: 2 (lower is better)
Translates to: LWVLDCTPSVYAKLP*LSKIPCDETPLRLP
Trigger: TGGCAGCCTGAGTGGTGTCTCATCACAGGGAATTTTACTGAGCAAAGGCAGCTTGGCGTATACTGAGGGTGTACAGTCCAGGACCCACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR TCA 90 bp TCTAGGCACAAGCCTTCAGGCTACCTACAGCTGGTAGTGCTGGAAATGGCAAATCTCCTCAGGGCCTCATaGCATACCACCCACAGCTCT +
Preference number: 2 (lower is better)
Translates to: SRHKPSGYLQLVVLEMANLLRAS*HTTHSS
Trigger: AGAGCTGTGGGTGGTATGTCATGAGGCCCTGAGGAG...ATTTGCCATTTCCAGCACTACCAGCTGTAGGTAGCCTGAAGGCTTGTGCCTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR TCA 90 bp TCAGGGTTCTTTTATAATGTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTGGCTGGAGGGGGCCCTaGCATTGCCCAAGGTCAGGA +
Preference number: 2 (lower is better)
Translates to: SGFFYNVTQGNTTKGRPSGWRGP*HCPRSG
Trigger: TCCTGACCTTGGGCAATGTCAGGGCCCCCTCCAGCC...ACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGACATTATAAAAGAACCCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR GCA 90 bp ACAGGCCAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTAATTCCATTCTGTCATaGCAGGTGTTTGTCAGAACC +
Preference number: 2 (lower is better)
Translates to: TGQEELVKPRWPDGQGAGNSILS*QVFVRT
Trigger: GGTTCTGACAAACACCTGGCATGACAGAATGGAATT...ACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTGGCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR GCA 90 bp CAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTGGAGTGCAGTATACGCCAAGCTaGCTTTGCTCAGTAAAATTC +
Preference number: 2 (lower is better)
Translates to: QEELVKPRWPDGQGAGGVQYTPS*LCSVKF
Trigger: GAATTTTACTGAGCAAAGGCAGCTTGGCGTATACTG...CACTCCACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CCA 90 bp GTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTTCATCTGTATTCACATGTGCCCAGATGGCCCGATaGCCAAGGAGCAGGTGGAGT +
Preference number: 2 (lower is better)
Translates to: VTQGNTTKGRPSSSVFTCAQMAR*PRSRWS
Trigger: ACTCCACCTGCTCCTTGGCCATCGGGCCATCTGGGC...ACATGTGAATACAGATGAACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CCA 90 bp GTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTTCATCTGTATTCACATGTCTGGTGAAGCCCAGATaGCCCGATGGCCAAGGAGCA +
Preference number: 2 (lower is better)
Translates to: VTQGNTTKGRPSSSVFTCLVKPR*PDGQGA
Trigger: TGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAG...ACATGTGAATACAGATGAACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR TCA 90 bp CAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTGGAGTGTTTGGGCAGATTAAATaGGATAATGCATGGAAAGCT +
Preference number: 2 (lower is better)
Translates to: QEELVKPRWPDGQGAGGVFGQIK*DNAWKA
Trigger: AGCTTTCCATGCATTATCTCATTTAATCTGCCCAAA...CACTCCACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CCA 90 bp AGACATGGACATCGTAACAAAGCAATTCACAGGGAGATGATGAGGTTCACGGGGCAGGAAGCCCTTGCATaGCCTATCGAGGACAGCTCA +
Preference number: 2 (lower is better)
Translates to: RHGHRNKAIHREMMRFTGQEALA*PIEDSS
Trigger: TGAGCTGTCCTCGATAGGCCATGCAAGGGCTTCCTG...CCCCGTGAACCTCATCATCTCCCTGTGAATTGCTTTGTTACGATGTCCATGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CAA 90 bp CCTCATGACATACCACCCACAGCTCTGTCAGACAGGCACAGACTTTaGTCAGGCACAATCTATAACCTCAAAGTCAGCACTCCCAGTTGG +
Preference number: 2 (lower is better)
Translates to: PHDIPPTALSDRHRL*SGTIYNLKVSTPSW
Trigger: CCAACTGGGAGTGCTGACTTTGAGGTTATAGATTGTGCCTGACAAAAGTCTGTGCCTGTCTGACAGAGCTGTGGGTGGTATGTCATGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR GCA 90 bp TCAGGGTTCTTTTATAATGTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTCTCTCAGGAAGCCCTTaGATGGCCTATCGAGGACAG +
Preference number: 2 (lower is better)
Translates to: SGFFYNVTQGNTTKGRPSLSGSP*MAYRGQ
Trigger: CTGTCCTCGATAGGCCATGCAAGGGCTTCCTGAGAG...ACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGACATTATAAAAGAACCCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR GCA 90 bp AAATGGACTGACCTCAAGTCCTGCAGCCTTTGTCCATCCAGTGGTTCTCCAGCGTCCTACAAGACACCATaGTATAGGCTTAGCTACTTG +
Preference number: 2 (lower is better)
Translates to: KWTDLKSCSLCPSSGSPASYKTP*YRLSYL
Trigger: CAAGTAGCTAAGCCTATAGCATGGTGTCTTGTAGGA...CGCTGGAGAACCACTGGATGGACAAAGGCTGCAGGACTTGAGGTCAGTCCATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR GCA 90 bp GTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTTCATCTGTATTCACATGTTTATGGAGGGCCAGCTaGATTCCAGACATGGACATC +
Preference number: 2 (lower is better)
Translates to: VTQGNTTKGRPSSSVFTCLWRAS*IPDMDI
Trigger: GATGTCCATGTCTGGAATGCAGCTGGCCCTCCATAA...ACATGTGAATACAGATGAACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR GCA 90 bp TCAGGGTTCTTTTATAATGTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTGGCCAATGCTCTTTCTaGTACACCAAGGCAGCTCCT +
Preference number: 2 (lower is better)
Translates to: SGFFYNVTQGNTTKGRPSGQCSF*YTKAAP
Trigger: AGGAGCTGCCTTGGTGTAGCAGAAAGAGCATTGGCC...ACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGACATTATAAAAGAACCCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CCA 90 bp TCTAGGCACAAGCCTTCAGGCTACCTACAGCTGGTAGTGCTGGAAATGGCAAATCAGGTAACATCGATTTaGTCCTACAAGACACCATGC +
Preference number: 2 (lower is better)
Translates to: SRHKPSGYLQLVVLEMANQVTSI*SYKTPC
Trigger: GCATGGTGTCTTGTAGGACCAAATCGATGTTACCTG...ATTTGCCATTTCCAGCACTACCAGCTGTAGGTAGCCTGAAGGCTTGTGCCTAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CCA 90 bp GTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTTCATCTGTATTCACATGTCAATGCTGTGGGTCCTaGACTGTACACCCTCAGTAT +
Preference number: 2 (lower is better)
Translates to: VTQGNTTKGRPSSSVFTCQCCGS*TVHPQY
Trigger: ATACTGAGGGTGTACAGTCCAGGACCCACAGCATTG...ACATGTGAATACAGATGAACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CAA 90 bp ATTTGGTCCTACAAGACACCATGCTATAGGCTTAGCTACTTGCTGTaGCACAAGAGAACTTTCCTGAACTCTCAGGAAGCCCTTGCATGG +
Preference number: 2 (lower is better)
Translates to: IWSYKTPCYRLSYLL*HKRTFLNSQEALAW
Trigger: CCATGCAAGGGCTTCCTGAGAGTTCAGGAAAGTTCTCTTGTGCAACAGCAAGTAGCTAAGCCTATAGCATGGTGTCTTGTAGGACCAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR GCA 90 bp TCTAGGCACAAGCCTTCAGGCTACCTACAGCTGGTAGTGCTGGAAATGGCAAATATTGCTGGAGGCATTTaGCAGTTAACACGAACTCTT +
Preference number: 2 (lower is better)
Translates to: SRHKPSGYLQLVVLEMANIAGGI*QLTRTL
Trigger: AAGAGTTCGTGTTAACTGGCAAATGCCTCCAGCAAT...ATTTGCCATTTCCAGCACTACCAGCTGTAGGTAGCCTGAAGGCTTGTGCCTAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CAA 90 bp ACATCGATTTGGTCCTACAAGACACCATGCTATAGGCTTAGCTACTaGCTGTTGCACAAGAGAACTTTCCTGAACTCTCAGGAAGCCCTT +
Preference number: 2 (lower is better)
Translates to: TSIWSYKTPCYRLSY*LLHKRTFLNSQEAL
Trigger: AAGGGCTTCCTGAGAGTTCAGGAAAGTTCTCTTGTGCAACAGCAAGTAGCTAAGCCTATAGCATGGTGTCTTGTAGGACCAAATCGATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR TCA 90 bp TCAGGGTTCTTTTATAATGTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTACAAGAGAACTTTCCTaGACTCTCAGGAAGCCCTTG +
Preference number: 2 (lower is better)
Translates to: SGFFYNVTQGNTTKGRPSTRELS*TLRKPL
Trigger: CAAGGGCTTCCTGAGAGTTCAGGAAAGTTCTCTTGT...ACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGACATTATAAAAGAACCCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR GCA 90 bp GTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTTCATCTGTATTCACATGTGCAAATCCAGAACATTaGTGGAGGCATTTGCCAGTT +
Preference number: 2 (lower is better)
Translates to: VTQGNTTKGRPSSSVFTCANPEH*WRHLPV
Trigger: AACTGGCAAATGCCTCCAGCAATGTTCTGGATTTGC...ACATGTGAATACAGATGAACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CCA 90 bp TCTAGGCACAAGCCTTCAGGCTACCTACAGCTGGTAGTGCTGGAAATGGCAAATGTGGTCTTCAAACCATaGCGTACCGATTTATGTATA +
Preference number: 2 (lower is better)
Translates to: SRHKPSGYLQLVVLEMANVVFKP*RTDLCI
Trigger: TATACATAAATCGGTACGCCATGGTTTGAAGACCAC...ATTTGCCATTTCCAGCACTACCAGCTGTAGGTAGCCTGAAGGCTTGTGCCTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR TCA 90 bp CCATCACACTCACACACATCAGCCATCATCAAAATAGTGGCCATGCTGGGAAGATGTTTGTCAGAACCTTaGAAACGAAGGTGGTTTTCA +
Preference number: 2 (lower is better)
Translates to: PSHSHTSAIIKIVAMLGRCLSEP*KRRWFS
Trigger: TGAAAACCACCTTCGTTTTCAAGGTTCTGACAAACA...TCTTCCCAGCATGGCCACTATTTTGATGATGGCTGATGTGTGTGAGTGTGATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR TCA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATGGACAGCTCAGTCACTaGAGGGAAAAATTCCATACC +
Preference number: 2 (lower is better)
Translates to: VVTNACKALFHSESTCTYGQLSH*REKFHT
Trigger: GGTATGGAATTTTTCCCTTCAGTGACTGAGCTGTCC...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR TCA 90 bp AAAAGGAATAAGATAAGGCAGCTGCCTTCAAGGATCTCACTGTCTAGGGAAGGGATATCTCAACACCATTaGGTGAGTGTGATGATAGAG +
Preference number: 2 (lower is better)
Translates to: KRNKIRQLPSRISLSREGISQHH*VSVMIE
Trigger: CTCTATCATCACACTCACTCAATGGTGTTGAGATAT...CCCTTCCCTAGACAGTGAGATCCTTGAAGGCAGCTGCCTTATCTTATTCCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000344870.4
ENST00000559140.2
3UTR-3UTR CCA 90 bp ACAAAAAGGAATAAGATAAGGCAGCTGCCTTCAAGGATCTCACTGTCTAGGGAAAAACAGGGGATAGTGTaGATCCTGTTCTTGGCTACA +
Preference number: 2 (lower is better)
Translates to: TKRNKIRQLPSRISLSREKQGIV*ILFLAT
Trigger: TGTAGCCAAGAACAGGATCCACACTATCCCCTGTTT...TTCCCTAGACAGTGAGATCCTTGAAGGCAGCTGCCTTATCTTATTCCTTTTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000559140.2
3UTR-3UTR GCA 90 bp TCAGGGTTCTTTTATAATGTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTATAGGCTTAGCTACTTaGTGTTGCACAAGAGAACTT +
Preference number: 2 (lower is better)
Translates to: SGFFYNVTQGNTTKGRPSIGLAT*CCTREL
Trigger: AAGTTCTCTTGTGCAACAGCAAGTAGCTAAGCCTAT...ACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGACATTATAAAAGAACCCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR GCA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATTGGAATCTAGGCCAATaGTCTTTCTGCTACACCAAG +
Preference number: 2 (lower is better)
Translates to: VVTNACKALFHSESTCTYWNLGQ*SFCYTK
Trigger: CTTGGTGTAGCAGAAAGAGCATTGGCCTAGATTCCA...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CCA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATAGCATAAGCCAACACTaGAATCTAGGCCAATGCTCT +
Preference number: 2 (lower is better)
Translates to: VVTNACKALFHSESTCTYSISQH*NLGQCS
Trigger: AGAGCATTGGCCTAGATTCCAGTGTTGGCTTATGCT...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CCA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATACAGGCATAATAGGGTaGAACAGCCTTGAATGTCAC +
Preference number: 2 (lower is better)
Translates to: VVTNACKALFHSESTCTYTGIIG*NSLECH
Trigger: GTGACATTCAAGGCTGTTCCACCCTATTATGCCTGT...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CCA 90 bp TCAGGGTTCTTTTATAATGTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTGTCAGCACTCCCAGTTaGGTGTTTTATTATTTATTT +
Preference number: 2 (lower is better)
Translates to: SGFFYNVTQGNTTKGRPSVSTPS*VFYYLF
Trigger: AAATAAATAATAAAACACCCAACTGGGAGTGCTGAC...ACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGACATTATAAAAGAACCCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CCA 72 bp GGGGGCCCTGACATTGCCCAAGGTCAGGAGTCCTGGTaGTCTAGGCACAAGCCTTCAGGCTACCTACAGCTG +
Preference number: 3 (lower is better)
Translates to: GGPDIAQGQESW*SRHKPSGYLQL
Trigger: CAGCTGTAGGTAGCCTGAAGGCTTGTGCCTAGACCACCAGGACTCCTGACCTTGGGCAATGTCAGGGCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CCA 72 bp GGAGGGGGCCCTGACATTGCCCAAGGTCAGGAGTCCTaGTGGTCTAGGCACAAGCCTTCAGGCTACCTACAG +
Preference number: 3 (lower is better)
Translates to: GGGPDIAQGQES*WSRHKPSGYLQ
Trigger: CTGTAGGTAGCCTGAAGGCTTGTGCCTAGACCACCAGGACTCCTGACCTTGGGCAATGTCAGGGCCCCCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CCA 72 bp AATGTCACAGGCCAAGAAGAGCTGGTGAAGCCCAGATaGCCCGATGGCCAAGGAGCAGGTGGAGTGGCTGCA +
Preference number: 3 (lower is better)
Translates to: NVTGQEELVKPR*PDGQGAGGVAA
Trigger: TGCAGCCACTCCACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTGGCCTGTGACATT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR GCA 72 bp TCAGTAAAATTCCCTGTGATGAGACACCACTCAGGCTaGCAGAAGCCCAAGGAGAGCCCTGGGGCTGCCCTG +
Preference number: 3 (lower is better)
Translates to: SVKFPVMRHHSG*QKPKESPGAAL
Trigger: CAGGGCAGCCCCAGGGCTCTCCTTGGGCTTCTGGCAGCCTGAGTGGTGTCTCATCACAGGGAATTTTACTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CAA 90 bp ACAGGCCAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTTACGCCAAGCTGCCTTaGCTCAGTAAAATTCCCTGT +
Preference number: 3 (lower is better)
Translates to: TGQEELVKPRWPDGQGAGYAKLP*LSKIPC
Trigger: ACAGGGAATTTTACTGAGCAAAGGCAGCTTGGCGTA...ACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTGGCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR GCA 72 bp GAGAGATTGGGGGTCAAATGGACTGACCTCAAGTCCTaGAGCCTTTGTCCATCCAGTGGTTCTCCAGCGTGC +
Preference number: 3 (lower is better)
Translates to: ERLGVKWTDLKS*SLCPSSGSPAC
Trigger: GCACGCTGGAGAACCACTGGATGGACAAAGGCTGCAGGACTTGAGGTCAGTCCATTTGACCCCCAATCTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CCA 72 bp CATTCACATCGGGTGATGGCTGCTGCCATGCGAGCCTaGGTCCAAACAGGGGATAGTGTGGATCCTGTTCTT +
Preference number: 3 (lower is better)
Translates to: HSHRVMAAAMRA*VQTGDSVDPVL
Trigger: AAGAACAGGATCCACACTATCCCCTGTTTGGACCCAGGCTCGCATGGCAGCAGCCATCACCCGATGTGAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
3UTR-3UTR CAA 90 bp ACAGGCCAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTAATCACCTGCAGCGTTaGTTAAAACCCAAATTCCAG +
Preference number: 3 (lower is better)
Translates to: TGQEELVKPRWPDGQGAGNHLQR*LKPKFQ
Trigger: CTGGAATTTGGGTTTTAACAAACGCTGCAGGTGATT...ACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTGGCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR TCA 72 bp AAGAAAGATGTCTCTGCTAAGCTCCTCAGGGCCTCATaGCATACCACCCACAGCTCTGTCAGACAGGCACAG +
Preference number: 3 (lower is better)
Translates to: KKDVSAKLLRAS*HTTHSSVRQAQ
Trigger: CTGTGCCTGTCTGACAGAGCTGTGGGTGGTATGTCATGAGGCCCTGAGGAGCTTAGCAGAGACATCTTTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CAA 90 bp TCTAGGCACAAGCCTTCAGGCTACCTACAGCTGGTAGTGCTGGAAATGGCAAATACTCTCAGGAAGCCCTaGCATGGCCTATCGAGGACA +
Preference number: 3 (lower is better)
Translates to: SRHKPSGYLQLVVLEMANTLRKP*HGLSRT
Trigger: TGTCCTCGATAGGCCATGCAAGGGCTTCCTGAGAGT...ATTTGCCATTTCCAGCACTACCAGCTGTAGGTAGCCTGAAGGCTTGTGCCTAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR GCA 72 bp GGGTCCTGGACTGTACACCCTCAGTATACGCCAAGCTaGCTTTGCTCAGTAAAATTCCCTGTGATGAGACAC +
Preference number: 3 (lower is better)
Translates to: GSWTVHPQYTPS*LCSVKFPVMRH
Trigger: GTGTCTCATCACAGGGAATTTTACTGAGCAAAGGCAGCTTGGCGTATACTGAGGGTGTACAGTCCAGGACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CAA 90 bp AAATGGACTGACCTCAAGTCCTGCAGCCTTTGTCCATCCAGTGGTTCTCCAGCGCTTAGCTACTTGCTGTaGCACAAGAGAACTTTCCTG +
Preference number: 3 (lower is better)
Translates to: KWTDLKSCSLCPSSGSPALSYLL*HKRTFL
Trigger: CAGGAAAGTTCTCTTGTGCAACAGCAAGTAGCTAAG...CGCTGGAGAACCACTGGATGGACAAAGGCTGCAGGACTTGAGGTCAGTCCATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR TCA 72 bp GGGGTGGTGGAGAAGAGGCAGCGAAGTTTTAAAGGCTaGCTAGAAATCAGTCAATCAGAGGACCTAGAGGTG +
Preference number: 3 (lower is better)
Translates to: GVVEKRQRSFKG*LEISQSEDLEV
Trigger: CACCTCTAGGTCCTCTGATTGACTGATTTCTAGTCAGCCTTTAAAACTTCGCTGCCTCTTCTCCACCACCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000559140.2
3UTR CCA 72 bp CCAAGGTCACAAAATAGTGAGAGATTGGGGGTCAAATaGACTGACCTCAAGTCCTGCAGCCTTTGTCCATCC +
Preference number: 3 (lower is better)
Translates to: PRSQNSERLGVK*TDLKSCSLCPS
Trigger: GGATGGACAAAGGCTGCAGGACTTGAGGTCAGTCCATTTGACCCCCAATCTCTCACTATTTTGTGACCTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR GCA 72 bp TGGACTGTACACCCTCAGTATACGCCAAGCTGCCTTTaGTCAGTAAAATTCCCTGTGATGAGACACCACTCA +
Preference number: 3 (lower is better)
Translates to: WTVHPQYTPSCL*SVKFPVMRHHS
Trigger: TGAGTGGTGTCTCATCACAGGGAATTTTACTGAGCAAAGGCAGCTTGGCGTATACTGAGGGTGTACAGTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CCA 72 bp GGATTTCTAATAAGTTCCCAGGTGAGATCAATGCTGTaGGTCCTGGACTGTACACCCTCAGTATACGCCAAG +
Preference number: 3 (lower is better)
Translates to: GFLISSQVRSML*VLDCTPSVYAK
Trigger: CTTGGCGTATACTGAGGGTGTACAGTCCAGGACCCACAGCATTGATCTCACCTGGGAACTTATTAGAAATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CAA 90 bp AGACATGGACATCGTAACAAAGCAATTCACAGGGAGATGATGAGGTTCACGGGGGACAGGCACAGACTTTaGTCAGGCACAATCTATAAC +
Preference number: 3 (lower is better)
Translates to: RHGHRNKAIHREMMRFTGDRHRL*SGTIYN
Trigger: GTTATAGATTGTGCCTGACAAAAGTCTGTGCCTGTC...CCCCGTGAACCTCATCATCTCCCTGTGAATTGCTTTGTTACGATGTCCATGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CAA 90 bp GGTGCAGAGGCATGTAGACACAAAATAGCCCCCTATGCTCAGGGAACTAGCTGGAATATCTCAACACCATaGAGTGAGTGTGATGATAGA +
Preference number: 3 (lower is better)
Translates to: GAEACRHKIAPYAQGTSWNISTP*SECDDR
Trigger: TCTATCATCACACTCACTCAATGGTGTTGAGATATT...CCAGCTAGTTCCCTGAGCATAGGGGGCTATTTTGTGTCTACATGCCTCTGCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000559140.2
3UTR-3UTR CAA 90 bp TTGAATTCACCGAGCTCCTATTCCTGTGAGGGAGACACAATGATAGAATCACAAGTGTGGATCCTGTTCTaGGCTACATCTCCTCCTGCT +
Preference number: 3 (lower is better)
Translates to: LNSPSSYSCEGDTMIESQVWILF*ATSPPA
Trigger: AGCAGGAGGAGATGTAGCCAAGAACAGGATCCACAC...TTGTGATTCTATCATTGTGTCTCCCTCACAGGAATAGGAGCTCGGTGAATTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000559140.2
3UTR TCA 72 bp CCCAGACTTTCTAATTCAGTGGGCCTAGGGTTGGCCTaGGAATCTGGATTTCTAATAAGTTCCCAGGTGAGA +
Preference number: 3 (lower is better)
Translates to: PRLSNSVGLGLA*ESGFLISSQVR
Trigger: TCTCACCTGGGAACTTATTAGAAATCCAGATTCTCAGGCCAACCCTAGGCCCACTGAATTAGAAAGTCTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR GCA 72 bp CAGCTGGTAGTGCTGGAAATGGCAAATCCAGAACATTaGTGGAGGCATTTGCCAGTTAACACGAACTCTTCT +
Preference number: 3 (lower is better)
Translates to: QLVVLEMANPEH*WRHLPVNTNSS
Trigger: AGAAGAGTTCGTGTTAACTGGCAAATGCCTCCAGCAATGTTCTGGATTTGCCATTTCCAGCACTACCAGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CCA 72 bp CTGGTAGTGCTGGAAATGGCAAATCCAGAACATTGCTaGAGGCATTTGCCAGTTAACACGAACTCTTCTGCA +
Preference number: 3 (lower is better)
Translates to: LVVLEMANPEHC*RHLPVNTNSSA
Trigger: TGCAGAAGAGTTCGTGTTAACTGGCAAATGCCTCCAGCAATGTTCTGGATTTGCCATTTCCAGCACTACCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CAA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATGGCAAATCCAGAACATaGCTGGAGGCATTTGCCAGT +
Preference number: 3 (lower is better)
Translates to: VVTNACKALFHSESTCTYGKSRT*LEAFAS
Trigger: ACTGGCAAATGCCTCCAGCAATGTTCTGGATTTGCC...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR TCA 72 bp AGCATGGTCCTTGAATTCACCGAGCTCCTATTCCTGTaGGGGAGACACAATGATAGAATCACAATTGTGGAA +
Preference number: 3 (lower is better)
Translates to: SMVLEFTELLFL*GRHNDRITIVE
Trigger: TTCCACAATTGTGATTCTATCATTGTGTCTCCCTCACAGGAATAGGAGCTCGGTGAATTCAAGGACCATGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
3UTR TCA 72 bp ATTCCATTCTGTCATGCCAGGTGTTTGTCAGAACCTTaGAAACGAAGGTGGTTTTCAGTGGAGCTTGTATTA +
Preference number: 3 (lower is better)
Translates to: IPFCHARCLSEP*KRRWFSVELVL
Trigger: TAATACAAGCTCCACTGAAAACCACCTTCGTTTTCAAGGTTCTGACAAACACCTGGCATGACAGAATGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CAA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATGTGTTTGTCAGAACCTaGAAAACGAAGGTGGTTTTC +
Preference number: 3 (lower is better)
Translates to: VVTNACKALFHSESTCTYVFVRT*KTKVVF
Trigger: GAAAACCACCTTCGTTTTCAAGGTTCTGACAAACAC...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR-3UTR CAA 90 bp CAAAGTCAGCACTCCCAGTTGGGTGTTTTATTATTTATTTACTTGACAGGTAACTATAGGCTTAGCTACTaGCTGTTGCACAAGAGAACT +
Preference number: 3 (lower is better)
Translates to: QSQHSQLGVLLFIYLTGNYRLSY*LLHKRT
Trigger: AGTTCTCTTGTGCAACAGCAAGTAGCTAAGCCTATA...GTTACCTGTCAAGTAAATAAATAATAAAACACCCAACTGGGAGTGCTGACTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR TCA 72 bp AGCACTCCCAGTTGGGTGTTTTATTATTTATTTACTTaGCAGGTAACATCGATTTGGTCCTACAAGACACCA +
Preference number: 3 (lower is better)
Translates to: STPSWVFYYLFT*QVTSIWSYKTP
Trigger: TGGTGTCTTGTAGGACCAAATCGATGTTACCTGTCAAGTAAATAAATAATAAAACACCCAACTGGGAGTGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR TCA 72 bp ATCTTCTTGTTATCCACTGGTTTGTGGGAAGAACTGTaGACCAATAAAATAAATGACTTGCTGAAGGTCACA +
Preference number: 3 (lower is better)
Translates to: IFLLSTGLWEEL*TNKINDLLKVT
Trigger: TGTGACCTTCAGCAAGTCATTTATTTTATTGGTTCACAGTTCTTCCCACAAACCAGTGGATAACAAGAAGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR TCA 72 bp AAGCACTTTTCCATTCAGAAAGCACTTGCACATATATaGCCTTATTTAAGGAACATCTTCTTGTTATCCACT +
Preference number: 3 (lower is better)
Translates to: KHFSIQKALAHI*PYLRNIFLLST
Trigger: AGTGGATAACAAGAAGATGTTCCTTAAATAAGGTCATATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp AAGCTGCCTTTGCTCAGTAAAATTCCCTGTGATGAGACACCACTCAGGCTGCCATCTGCACCGCCGTCTTaGGCCCGGGCCGAGCCTCCC +
Preference number: 4 (lower is better)
Translates to: KLPLLSKIPCDETPLRLPSAPPS*ARAEPP
Trigger: GGGAGGCTCGGCCCGGGCCCAAGACGGCGGTGCAGA...TGGCAGCCTGAGTGGTGTCTCATCACAGGGAATTTTACTGAGCAAAGGCAGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp TCTAGGCACAAGCCTTCAGGCTACCTACAGCTGGTAGTGCTGGAAATGGCAAATGCAGTGGTGCCACTGTaGCCGCGGCTCGGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: SRHKPSGYLQLVVLEMANAVVPL*PRLGSS
Trigger: GGAGGAGCCGAGCCGCGGGCACAGTGGCACCACTGC...ATTTGCCATTTCCAGCACTACCAGCTGTAGGTAGCCTGAAGGCTTGTGCCTAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp CAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTGGAGTGAGGGTGGAACAGCCTTaGATGTCACAGGCCAAGAAG +
Preference number: 4 (lower is better)
Translates to: QEELVKPRWPDGQGAGGVRVEQP*MSQAKK
Trigger: CTTCTTGGCCTGTGACATTCAAGGCTGTTCCACCCT...CACTCCACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp AAGCTGCCTTTGCTCAGTAAAATTCCCTGTGATGAGACACCACTCAGGCTGCCAGCCCAAGGAGAGCCCTaGGGCTGCCCTGGGGTACAG +
Preference number: 4 (lower is better)
Translates to: KLPLLSKIPCDETPLRLPAQGEP*GCPGVQ
Trigger: CTGTACCCCAGGGCAGCCCCAGGGCTCTCCTTGGGC...TGGCAGCCTGAGTGGTGTCTCATCACAGGGAATTTTACTGAGCAAAGGCAGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp AAATGGACTGACCTCAAGTCCTGCAGCCTTTGTCCATCCAGTGGTTCTCCAGCGGCCCAGATGGCCCGATaGCCAAGGAGCAGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: KWTDLKSCSLCPSSGSPAAQMAR*PRSRWS
Trigger: ACTCCACCTGCTCCTTGGCCATCGGGCCATCTGGGC...CGCTGGAGAACCACTGGATGGACAAAGGCTGCAGGACTTGAGGTCAGTCCATTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp GCATGTAGACACAAAATAGCCCCCTATGCTCAGGGAACTAGCTGGAATCACGGGTCAAGCCACGGGAGCTaGGCAGTTCTGTGCCCGCGG +
Preference number: 4 (lower is better)
Translates to: ACRHKIAPYAQGTSWNHGSSHGS*AVLCPR
Trigger: CCGCGGGCACAGAACTGCCCAGCTCCCGTGGCTTGA...CCCGTGATTCCAGCTAGTTCCCTGAGCATAGGGGGCTATTTTGTGTCTACATGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR TCA 90 bp CAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTGGAGTGGTGGGCTCCTCGTCATaGTTTTTGTCTTTGGCAGGT +
Preference number: 4 (lower is better)
Translates to: QEELVKPRWPDGQGAGGVVGSSS*FLSLAG
Trigger: ACCTGCCAAAGACAAAAATCATGACGAGGAGCCCAC...CACTCCACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp AGACATGGACATCGTAACAAAGCAATTCACAGGGAGATGATGAGGTTCACGGGGGGTGGCCAGACGGGCTaGGCTTGTTGGTGGCCGCGT +
Preference number: 4 (lower is better)
Translates to: RHGHRNKAIHREMMRFTGGGQTG*ACWWPR
Trigger: ACGCGGCCACCAACAAGCTCAGCCCGTCTGGCCACC...CCCCGTGAACCTCATCATCTCCCTGTGAATTGCTTTGTTACGATGTCCATGTCT
57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp CCATCACACTCACACACATCAGCCATCATCAAAATAGTGGCCATGCTGGGAAGAATGGCGACGCGGATCTaGACCGCCGTCTTGGGCCCG +
Preference number: 4 (lower is better)
Translates to: PSHSHTSAIIKIVAMLGRMATRI*TAVLGP
Trigger: CGGGCCCAAGACGGCGGTGCAGATCCGCGTCGCCAT...TCTTCCCAGCATGGCCACTATTTTGATGATGGCTGATGTGTGTGAGTGTGATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp AATGCTGTGGGTCCTGGACTGTACACCCTCAGTATACGCCAAGCTGCCTTTGCTTTGCCCAGGCTGGAATaGAGCGGCGTGATCTCGGCT +
Preference number: 4 (lower is better)
Translates to: NAVGPGLYTLSIRQAAFALPRLE*SGVISA
Trigger: AGCCGAGATCACGCCGCTGCATTCCAGCCTGGGCAA...AGCAAAGGCAGCTTGGCGTATACTGAGGGTGTACAGTCCAGGACCCACAGCATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp GCATGTAGACACAAAATAGCCCCCTATGCTCAGGGAACTAGCTGGAATCACGGGTCGGGTGATGGCTGCTaGCATGCGAGCCTGGGTCCA +
Preference number: 4 (lower is better)
Translates to: ACRHKIAPYAQGTSWNHGSGDGC*HASLGP
Trigger: TGGACCCAGGCTCGCATGGCAGCAGCCATCACCCGA...CCCGTGATTCCAGCTAGTTCCCTGAGCATAGGGGGCTATTTTGTGTCTACATGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR CCA 90 bp CCTTCAAGGATCTCACTGTCTAGGGAAGGGGAAACACAAATATCTCAACACCATTCTGCACCGCCGTCTTaGGCCCGGGCCGAGCCTCCC +
Preference number: 4 (lower is better)
Translates to: PSRISLSREGETQISQHHSAPPS*ARAEPP
Trigger: GGGAGGCTCGGCCCGGGCCCAAGACGGCGGTGCAGA...ATGGTGTTGAGATATTTGTGTTTCCCCTTCCCTAGACAGTGAGATCCTTGAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344870.4
CDS-3UTR CCA 90 bp GGGCTCCAAAGCCAGACCACTAGTTTCAAGCCCAACTCTACCAATTTAGCTGTTGTCCCCATCTCGGCTTaGCGACGCCTCCGGACCCAG +
Preference number: 4 (lower is better)
Translates to: GLQSQTTSFKPNSTNLAVVPISA*RRLRTQ
Trigger: CTGGGTCCGGAGGCGTCGCCAAGCCGAGATGGGGAC...AACAGCTAAATTGGTAGAGTTGGGCTTGAAACTAGTGGTCTGGCTTTGGAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp CAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTGGAGTGCAATGCTGTGGGTCCTaGACTGTACACCCTCAGTAT +
Preference number: 4 (lower is better)
Translates to: QEELVKPRWPDGQGAGGVQCCGS*TVHPQY
Trigger: ATACTGAGGGTGTACAGTCCAGGACCCACAGCATTG...CACTCCACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp GGGCTCCAAAGCCAGACCACTAGTTTCAAGCCCAACTCTACCAATTTAGCTGTTGGCTGGAGGGGGCCCTaGCATTGCCCAAGGTCAGGA +
Preference number: 4 (lower is better)
Translates to: GLQSQTTSFKPNSTNLAVGWRGP*HCPRSG
Trigger: TCCTGACCTTGGGCAATGTCAGGGCCCCCTCCAGCC...AACAGCTAAATTGGTAGAGTTGGGCTTGAAACTAGTGGTCTGGCTTTGGAGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp CAGCTGCCTTCAAGGATCTCACTGTCTAGGGAAGGGGAAACACAAATATCTCAAATGGCGACGCGGATCTaGACCGCCGTCTTGGGCCCG +
Preference number: 4 (lower is better)
Translates to: QLPSRISLSREGETQISQMATRI*TAVLGP
Trigger: CGGGCCCAAGACGGCGGTGCAGATCCGCGTCGCCAT...TTGAGATATTTGTGTTTCCCCTTCCCTAGACAGTGAGATCCTTGAAGGCAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344870.4
CDS-3UTR GCA 90 bp AAATGGACTGACCTCAAGTCCTGCAGCCTTTGTCCATCCAGTGGTTCTCCAGCGAGCCCATCTGCAGTCTaGATCTTCCGGGAGAGCAGG +
Preference number: 4 (lower is better)
Translates to: KWTDLKSCSLCPSSGSPASPSAV*IFRESR
Trigger: CCTGCTCTCCCGGAAGATGCAGACTGCAGATGGGCT...CGCTGGAGAACCACTGGATGGACAAAGGCTGCAGGACTTGAGGTCAGTCCATTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp CAAACAGGGGATAGTGTGGATCCTGTTCTTGGCTACATCTCCTCCTGCTCTGGGCTGGGGTCAACTCTATaGCAGTGGGCAGCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: QTGDSVDPVLGYISSCSGLGSTL*QWAAGR
Trigger: CCTTCCTGCTGCCCACTGGCATAGAGTTGACCCCAG...CCCAGAGCAGGAGGAGATGTAGCCAAGAACAGGATCCACACTATCCCCTGTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR CCA 90 bp AGCTGCCTTCAAGGATCTCACTGTCTAGGGAAGGGGAAACACAAATATCTCAACCCTCGGCCTCCTGGATaGCGACGCGGATCTGCACCG +
Preference number: 4 (lower is better)
Translates to: SCLQGSHCLGKGKHKYLNPRPPG*RRGSAP
Trigger: CGGTGCAGATCCGCGTCGCCATCCAGGAGGCCGAGG...GTTGAGATATTTGTGTTTCCCCTTCCCTAGACAGTGAGATCCTTGAAGGCAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344870.4
CDS-3UTR CCA 90 bp TCTAGGCACAAGCCTTCAGGCTACCTACAGCTGGTAGTGCTGGAAATGGCAAATACAGTGGGACGGGGGTaGTCCTCCTCACCTTCCGGT +
Preference number: 4 (lower is better)
Translates to: SRHKPSGYLQLVVLEMANTVGRG*SSSPSG
Trigger: ACCGGAAGGTGAGGAGGACCACCCCCGTCCCACTGT...ATTTGCCATTTCCAGCACTACCAGCTGTAGGTAGCCTGAAGGCTTGTGCCTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp AATGCTGTGGGTCCTGGACTGTACACCCTCAGTATACGCCAAGCTGCCTTTGCTAGGGACTTGTTCAGGTaGATGCTCGCAGTGGGCTCC +
Preference number: 4 (lower is better)
Translates to: NAVGPGLYTLSIRQAAFARDLFR*MLAVGS
Trigger: GGAGCCCACTGCGAGCATCCACCTGAACAAGTCCCT...AGCAAAGGCAGCTTGGCGTATACTGAGGGTGTACAGTCCAGGACCCACAGCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp ACAGGCCAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTCAACTCAAGGACCACTaGATACTTCAAAGCATGTGC +
Preference number: 4 (lower is better)
Translates to: TGQEELVKPRWPDGQGAGQLKDH*ILQSMC
Trigger: GCACATGCTTTGAAGTATTCAGTGGTCCTTGAGTTG...ACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTGGCCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp TCTAGGCACAAGCCTTCAGGCTACCTACAGCTGGTAGTGCTGGAAATGGCAAATGCCAAGAAGAGCTGGTaGAGCCCAGATGGCCCGATG +
Preference number: 4 (lower is better)
Translates to: SRHKPSGYLQLVVLEMANAKKSW*SPDGPM
Trigger: CATCGGGCCATCTGGGCTTCACCAGCTCTTCTTGGC...ATTTGCCATTTCCAGCACTACCAGCTGTAGGTAGCCTGAAGGCTTGTGCCTAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp GGTGCAGAGGCATGTAGACACAAAATAGCCCCCTATGCTCAGGGAACTAGCTGGGTAGGCTCCAGGAGCTaGGAACATTCACATCGGGTG +
Preference number: 4 (lower is better)
Translates to: GAEACRHKIAPYAQGTSWVGSRS*EHSHRV
Trigger: CACCCGATGTGAATGTTCTCAGCTCCTGGAGCCTAC...CCAGCTAGTTCCCTGAGCATAGGGGGCTATTTTGTGTCTACATGCCTCTGCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR GCA 90 bp GTTGGCCTGAGAATCTGGATTTCTAATAAGTTCCCAGGTGAGATCAATGCTGTGTTGTTGGTGGCCGCGTaGCGTCGGCCCGCCATAGGG +
Preference number: 4 (lower is better)
Translates to: VGLRIWISNKFPGEINAVLLVAA*RRPAIG
Trigger: CCCTATGGCGGGCCGACGGCACGCGGCCACCAACAA...CACAGCATTGATCTCACCTGGGAACTTATTAGAAATCCAGATTCTCAGGCCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp ACAGGCCAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTGCAAATCCAGAACATTaGTGGAGGCATTTGCCAGTT +
Preference number: 4 (lower is better)
Translates to: TGQEELVKPRWPDGQGAGANPEH*WRHLPV
Trigger: AACTGGCAAATGCCTCCAGCAATGTTCTGGATTTGC...ACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTGGCCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp CAAGGATCTCACTGTCTAGGGAAGGGGAAACACAAATATCTCAACACCATTGAGAGCTGGGCAGTTCTGTaGCCGCGGCTCGGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: QGSHCLGKGKHKYLNTIESWAVL*PRLGSS
Trigger: GGAGGAGCCGAGCCGCGGGCACAGAACTGCCCAGCT...CTCAATGGTGTTGAGATATTTGTGTTTCCCCTTCCCTAGACAGTGAGATCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR CCA 90 bp GTTGGCCTGAGAATCTGGATTTCTAATAAGTTCCCAGGTGAGATCAATGCTGTGCCTCGGCCTCCTGGATaGCGACGCGGATCTGCACCG +
Preference number: 4 (lower is better)
Translates to: VGLRIWISNKFPGEINAVPRPPG*RRGSAP
Trigger: CGGTGCAGATCCGCGTCGCCATCCAGGAGGCCGAGG...CACAGCATTGATCTCACCTGGGAACTTATTAGAAATCCAGATTCTCAGGCCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp GTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTTCATCTGTATTCACATGTCACCTCCACTTGCAGTaGTGCCACTGTGCCCGCGGC +
Preference number: 4 (lower is better)
Translates to: VTQGNTTKGRPSSSVFTCHLHLQ*CHCARG
Trigger: GCCGCGGGCACAGTGGCACCACTGCAAGTGGAGGTG...ACATGTGAATACAGATGAACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp AGACATGGACATCGTAACAAAGCAATTCACAGGGAGATGATGAGGTTCACGGGGCTCGTTGGGGAACAGTaGGACGGGGGTGGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: RHGHRNKAIHREMMRFTGLVGEQ*DGGGPP
Trigger: AGGAGGACCACCCCCGTCCCACTGTTCCCCAACGAG...CCCCGTGAACCTCATCATCTCCCTGTGAATTGCTTTGTTACGATGTCCATGTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp CAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTGGAGTGCAGGTAACATCGATTTaGTCCTACAAGACACCATGC +
Preference number: 4 (lower is better)
Translates to: QEELVKPRWPDGQGAGGVQVTSI*SYKTPC
Trigger: GCATGGTGTCTTGTAGGACCAAATCGATGTTACCTG...CACTCCACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp CAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTGGAGTGAGCATAAGCCAACACTaGAATCTAGGCCAATGCTCT +
Preference number: 4 (lower is better)
Translates to: QEELVKPRWPDGQGAGGVSISQH*NLGQCS
Trigger: AGAGCATTGGCCTAGATTCCAGTGTTGGCTTATGCT...CACTCCACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp GGGATAGTGTGGATCCTGTTCTTGGCTACATCTCCTCCTGCTCTGGGTGCCTGCTGTGGATCCTGTTCTTaGCTACATCTCCTCCTGCTC +
Preference number: 4 (lower is better)
Translates to: GIVWILFLATSPPALGACCGSCS*LHLLLL
Trigger: GAGCAGGAGGAGATGTAGCCAAGAACAGGATCCACA...GCAGGCACCCAGAGCAGGAGGAGATGTAGCCAAGAACAGGATCCACACTATCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR CCA 90 bp GCATGTAGACACAAAATAGCCCCCTATGCTCAGGGAACTAGCTGGAATCACGGGGCTGCCATGCGAGCCTaGGTCCAAACAGGGGATAGT +
Preference number: 4 (lower is better)
Translates to: ACRHKIAPYAQGTSWNHGAAMRA*VQTGDS
Trigger: ACTATCCCCTGTTTGGACCCAGGCTCGCATGGCAGC...CCCGTGATTCCAGCTAGTTCCCTGAGCATAGGGGGCTATTTTGTGTCTACATGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR TCA 90 bp GCATGTAGACACAAAATAGCCCCCTATGCTCAGGGAACTAGCTGGAATCACGGGGTTGAGGCAATGGGCTaGGGAGATGATGTGAGTGGG +
Preference number: 4 (lower is better)
Translates to: ACRHKIAPYAQGTSWNHGVEAMG*GDDVSG
Trigger: CCCACTCACATCATCTCCTCAGCCCATTGCCTCAAC...CCCGTGATTCCAGCTAGTTCCCTGAGCATAGGGGGCTATTTTGTGTCTACATGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR GCA 90 bp CTTTTGTCAGGCACAATCTATAACCTCAAAGTCAGCACTCCCAGTTGGGTGTTTGGGGGCTTCCACTCCTaGTCCAGGTCCTCACGCTCG +
Preference number: 4 (lower is better)
Translates to: LLSGTIYNLKVSTPSWVFGGFHS*SRSSRS
Trigger: CGAGCGTGAGGACCTGGAGCAGGAGTGGAAGCCCCC...AAACACCCAACTGGGAGTGCTGACTTTGAGGTTATAGATTGTGCCTGACAAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp CAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTGGAGTGAATTCCATTCTGTCATaGCAGGTGTTTGTCAGAACC +
Preference number: 4 (lower is better)
Translates to: QEELVKPRWPDGQGAGGVNSILS*QVFVRT
Trigger: GGTTCTGACAAACACCTGGCATGACAGAATGGAATT...CACTCCACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp AATGCTGTGGGTCCTGGACTGTACACCCTCAGTATACGCCAAGCTGCCTTTGCTGGCCAATGCTCTTTCTaGTACACCAAGGCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: NAVGPGLYTLSIRQAAFAGQCSF*YTKAAP
Trigger: AGGAGCTGCCTTGGTGTAGCAGAAAGAGCATTGGCC...AGCAAAGGCAGCTTGGCGTATACTGAGGGTGTACAGTCCAGGACCCACAGCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp CAAGGATCTCACTGTCTAGGGAAGGGGAAACACAAATATCTCAACACCATTGAGGAGCTCCTATTCCTGTaGCCGCGGCTCGGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: QGSHCLGKGKHKYLNTIEELLFL*PRLGSS
Trigger: GGAGGAGCCGAGCCGCGGGCACAGGAATAGGAGCTC...CTCAATGGTGTTGAGATATTTGTGTTTCCCCTTCCCTAGACAGTGAGATCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344870.4
CDS-3UTR CCA 90 bp GTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTTCATCTGTATTCACATGTTGGGGAGGTTCTCGTTaGGGAACAGTGGGACGGGGG +
Preference number: 4 (lower is better)
Translates to: VTQGNTTKGRPSSSVFTCWGGSR*GTVGRG
Trigger: CCCCCGTCCCACTGTTCCCCAACGAGAACCTCCCCA...ACATGTGAATACAGATGAACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp TCTAGGCACAAGCCTTCAGGCTACCTACAGCTGGTAGTGCTGGAAATGGCAAATACCTTCCTCCGCCAGTaGGGACTTTCTGGAAACGCC +
Preference number: 4 (lower is better)
Translates to: SRHKPSGYLQLVVLEMANTFLRQ*GLSGNA
Trigger: GGCGTTTCCAGAAAGTCCCCACTGGCGGAGGAAGGT...ATTTGCCATTTCCAGCACTACCAGCTGTAGGTAGCCTGAAGGCTTGTGCCTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp ACAGGCCAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTAAAATAGTGAGAGATTaGGGGTCAAATGGACTGACC +
Preference number: 4 (lower is better)
Translates to: TGQEELVKPRWPDGQGAGKIVRD*GSNGLT
Trigger: GGTCAGTCCATTTGACCCCCAATCTCTCACTATTTT...ACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTGGCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp TCTAGGCACAAGCCTTCAGGCTACCTACAGCTGGTAGTGCTGGAAATGGCAAATAATCTCCTGACCTCATaGTCTGCCCGCCTCAGTCTC +
Preference number: 4 (lower is better)
Translates to: SRHKPSGYLQLVVLEMANNLLTS*SARLSL
Trigger: GAGACTGAGGCGGGCAGATCATGAGGTCAGGAGATT...ATTTGCCATTTCCAGCACTACCAGCTGTAGGTAGCCTGAAGGCTTGTGCCTAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp ATCTGGGTTTTCTCCTGTAGGCTCCAGGAGCTGAGAACATTCACATCGGGTGATAACATTCACATCGGGTaGTGGCTGCTGCCATGCGAG +
Preference number: 4 (lower is better)
Translates to: IWVFSCRLQELRTFTSGDNIHIG*WLLPCE
Trigger: CTCGCATGGCAGCAGCCATCACCCGATGTGAATGTT...ATCACCCGATGTGAATGTTCTCAGCTCCTGGAGCCTACAGGAGAAAACCCAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR GCA 90 bp AAGCTGCCTTTGCTCAGTAAAATTCCCTGTGATGAGACACCACTCAGGCTGCCAAGACCAGGAGCATCTTaGTGGGGAGGTTCTCGTTGG +
Preference number: 4 (lower is better)
Translates to: KLPLLSKIPCDETPLRLPRPGAS*WGGSRW
Trigger: CCAACGAGAACCTCCCCAGCAAGATGCTCCTGGTCT...TGGCAGCCTGAGTGGTGTCTCATCACAGGGAATTTTACTGAGCAAAGGCAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp GGGCTCCAAAGCCAGACCACTAGTTTCAAGCCCAACTCTACCAATTTAGCTGTTTTCTGGAAACGCCTTTaGGTTGGGCCAAGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: GLQSQTTSFKPNSTNLAVFWKRL*VGPRGC
Trigger: GCAGCCCCTTGGCCCAACGCAAAGGCGTTTCCAGAA...AACAGCTAAATTGGTAGAGTTGGGCTTGAAACTAGTGGTCTGGCTTTGGAGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp CTTTTGTCAGGCACAATCTATAACCTCAAAGTCAGCACTCCCAGTTGGGTGTTTCCTCGAACTCCACGATaGCGCACTCCTGGGTCCCCA +
Preference number: 4 (lower is better)
Translates to: LLSGTIYNLKVSTPSWVFPRTPR*RTPGSP
Trigger: TGGGGACCCAGGAGTGCGCCATCGTGGAGTTCGAGG...AAACACCCAACTGGGAGTGCTGACTTTGAGGTTATAGATTGTGCCTGACAAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp CACACATCAGCCATCATCAAAATAGTGGCCATGCTGGGAAGAACAGGAGTCCTGCAGGAAGCCCTTGCATaGCCTATCGAGGACAGCTCA +
Preference number: 4 (lower is better)
Translates to: HTSAIIKIVAMLGRTGVLQEALA*PIEDSS
Trigger: TGAGCTGTCCTCGATAGGCCATGCAAGGGCTTCCTG...CAGGACTCCTGTTCTTCCCAGCATGGCCACTATTTTGATGATGGCTGATGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp GTTGGCCTGAGAATCTGGATTTCTAATAAGTTCCCAGGTGAGATCAATGCTGTGGCCCTGGGGCTGCCCTaGGGTACAGTGAGAAACCCT +
Preference number: 4 (lower is better)
Translates to: VGLRIWISNKFPGEINAVALGLP*GTVRNP
Trigger: AGGGTTTCTCACTGTACCCCAGGGCAGCCCCAGGGC...CACAGCATTGATCTCACCTGGGAACTTATTAGAAATCCAGATTCTCAGGCCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp CACACATCAGCCATCATCAAAATAGTGGCCATGCTGGGAAGAACAGGAGTCCTGCAAGGTCAGGAGTCCTaGTGGTCTAGGCACAAGCCT +
Preference number: 4 (lower is better)
Translates to: HTSAIIKIVAMLGRTGVLQGQES*WSRHKP
Trigger: AGGCTTGTGCCTAGACCACCAGGACTCCTGACCTTG...CAGGACTCCTGTTCTTCCCAGCATGGCCACTATTTTGATGATGGCTGATGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp TCATGCCAGGTGTTTGTCAGAACCTTGAAAACGAAGGTGGTTTTCAGTGGAGCTCTGGTGAAGCCCAGATaGCCCGATGGCCAAGGAGCA +
Preference number: 4 (lower is better)
Translates to: SCQVFVRTLKTKVVFSGALVKPR*PDGQGA
Trigger: TGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAG...AGCTCCACTGAAAACCACCTTCGTTTTCAAGGTTCTGACAAACACCTGGCATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp ATCTGGGTTTTCTCCTGTAGGCTCCAGGAGCTGAGAACATTCACATCGGGTGATGCTCAGGGAACTAGCTaGAATCACGGGAGCGTGAAC +
Preference number: 4 (lower is better)
Translates to: IWVFSCRLQELRTFTSGDAQGTS*NHGSVN
Trigger: GTTCACGCTCCCGTGATTCCAGCTAGTTCCCTGAGC...ATCACCCGATGTGAATGTTCTCAGCTCCTGGAGCCTACAGGAGAAAACCCAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR TCA 90 bp AAGCTGCCTTTGCTCAGTAAAATTCCCTGTGATGAGACACCACTCAGGCTGCCAGATCCACCAGTTTCTTaGTCAACTCCTCATCCGGGG +
Preference number: 4 (lower is better)
Translates to: KLPLLSKIPCDETPLRLPDPPVS*STPHPG
Trigger: CCCCGGATGAGGAGTTGATCAAGAAACTGGTGGATC...TGGCAGCCTGAGTGGTGTCTCATCACAGGGAATTTTACTGAGCAAAGGCAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATGGCTGTAGCGGCTGCTaGTCCTCCGGATGTCAGGGG +
Preference number: 4 (lower is better)
Translates to: VVTNACKALFHSESTCTYGCSGC*SSGCQG
Trigger: CCCCTGACATCCGGAGGATCAGCAGCCGCTACAGCC...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp CTTTTGTCAGGCACAATCTATAACCTCAAAGTCAGCACTCCCAGTTGGGTGTTTGGCTGCCAGAGGGAGTaGCGCTGCTGTCAGAGGAAT +
Preference number: 4 (lower is better)
Translates to: LLSGTIYNLKVSTPSWVFGCQRE*RCCQRN
Trigger: ATTCCTCTGACAGCAGCGTCACTCCCTCTGGCAGCC...AAACACCCAACTGGGAGTGCTGACTTTGAGGTTATAGATTGTGCCTGACAAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp CACACATCAGCCATCATCAAAATAGTGGCCATGCTGGGAAGAACAGGAGTCCTGTTCAAGCAATTCTCCTaGCTCCGCCTCCCAAGTAGC +
Preference number: 4 (lower is better)
Translates to: HTSAIIKIVAMLGRTGVLFKQFS*LRLPSS
Trigger: GCTACTTGGGAGGCGGAGGCAGGAGAATTGCTTGAA...CAGGACTCCTGTTCTTCCCAGCATGGCCACTATTTTGATGATGGCTGATGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp TCAGGGTTCTTTTATAATGTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTACCCTTCCATTCTTCTaGGGGGTGGCCAGAGCCCAC +
Preference number: 4 (lower is better)
Translates to: SGFFYNVTQGNTTKGRPSTLPFF*GVARAH
Trigger: GTGGGCTCTGGCCACCCCCCAGAAGAATGGAAGGGT...ACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGACATTATAAAAGAACCCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp AAGCTGCCTTTGCTCAGTAAAATTCCCTGTGATGAGACACCACTCAGGCTGCCAGGTCAGAGGAGCTGTTaGCAGAAGACTCATCACCCA +
Preference number: 4 (lower is better)
Translates to: KLPLLSKIPCDETPLRLPGQRSC*QKTHHP
Trigger: TGGGTGATGAGTCTTCTGCCAACAGCTCCTCTGACC...TGGCAGCCTGAGTGGTGTCTCATCACAGGGAATTTTACTGAGCAAAGGCAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp GGGCTCCAAAGCCAGACCACTAGTTTCAAGCCCAACTCTACCAATTTAGCTGTTCTCAGAAAGAGATTCTaGTGGCCAGACGGGCTGAGC +
Preference number: 4 (lower is better)
Translates to: GLQSQTTSFKPNSTNLAVLRKRF*WPDGLS
Trigger: GCTCAGCCCGTCTGGCCACCAGAATCTCTTTCTGAG...AACAGCTAAATTGGTAGAGTTGGGCTTGAAACTAGTGGTCTGGCTTTGGAGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp TCATGCCAGGTGTTTGTCAGAACCTTGAAAACGAAGGTGGTTTTCAGTGGAGCTGAAACGCCTTTGCGTTaGGCCAAGGGGCTGCTCCAA +
Preference number: 4 (lower is better)
Translates to: SCQVFVRTLKTKVVFSGAETPLR*AKGLLQ
Trigger: TTGGAGCAGCCCCTTGGCCCAACGCAAAGGCGTTTC...AGCTCCACTGAAAACCACCTTCGTTTTCAAGGTTCTGACAAACACCTGGCATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp TCTAGGCACAAGCCTTCAGGCTACCTACAGCTGGTAGTGCTGGAAATGGCAAATGGAAGATCTCAGGGCTaGTGCTGCAGTTCAGTCTAC +
Preference number: 4 (lower is better)
Translates to: SRHKPSGYLQLVVLEMANGRSQG*CCSSVY
Trigger: GTAGACTGAACTGCAGCACCAGCCCTGAGATCTTCC...ATTTGCCATTTCCAGCACTACCAGCTGTAGGTAGCCTGAAGGCTTGTGCCTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp GTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTTCATCTGTATTCACATGTTGTTGTCAGGACCCCTaGGCAACCTCAGCACCCCTA +
Preference number: 4 (lower is better)
Translates to: VTQGNTTKGRPSSSVFTCCCQDP*ATSAPL
Trigger: TAGGGGTGCTGAGGTTGCCCAGGGGTCCTGACAACA...ACATGTGAATACAGATGAACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp GTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTTCATCTGTATTCACATGTGCTCTCTCCCAGGTTTaGGGATCCGCACTGATGAGA +
Preference number: 4 (lower is better)
Translates to: VTQGNTTKGRPSSSVFTCALSQV*GSALMR
Trigger: TCTCATCAGTGCGGATCCTCAAACCTGGGAGAGAGC...ACATGTGAATACAGATGAACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp ATAAGGCAGCTGCCTTCAAGGATCTCACTGTCTAGGGAAGGGGAAACACAAATAGGGAGCGTGAACTGTTaGCAGCGTGAACTGTTGAGG +
Preference number: 4 (lower is better)
Translates to: IRQLPSRISLSREGETQIGSVNC*QRELLR
Trigger: CCTCAACAGTTCACGCTGTCAACAGTTCACGCTCCC...TATTTGTGTTTCCCCTTCCCTAGACAGTGAGATCCTTGAAGGCAGCTGCCTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR TCA 90 bp CTGCCTTCAAGGATCTCACTGTCTAGGGAAGGGGAAACACAAATATCTCAACACGGAATCACGGGAGCGTaGACTGTTGACAGCGTGAAC +
Preference number: 4 (lower is better)
Translates to: LPSRISLSREGETQISQHGITGA*TVDSVN
Trigger: GTTCACGCTGTCAACAGTTCACGCTCCCGTGATTCC...GTGTTGAGATATTTGTGTTTCCCCTTCCCTAGACAGTGAGATCCTTGAAGGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR GCA 90 bp AGACATGGACATCGTAACAAAGCAATTCACAGGGAGATGATGAGGTTCACGGGGATGGGCTTTGATGGCTaGTTCCACCTCCTCGAACTC +
Preference number: 4 (lower is better)
Translates to: RHGHRNKAIHREMMRFTGMGFDG*FHLLEL
Trigger: GAGTTCGAGGAGGTGGAAGCAGCCATCAAAGCCCAT...CCCCGTGAACCTCATCATCTCCCTGTGAATTGCTTTGTTACGATGTCCATGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp TCATGCCAGGTGTTTGTCAGAACCTTGAAAACGAAGGTGGTTTTCAGTGGAGCTTGCTCCAAGGACTTGTaGACGGGGAGGCATTTGGAC +
Preference number: 4 (lower is better)
Translates to: SCQVFVRTLKTKVVFSGACSKDL*TGRHLD
Trigger: GTCCAAATGCCTCCCCGTGCACAAGTCCTTGGAGCA...AGCTCCACTGAAAACCACCTTCGTTTTCAAGGTTCTGACAAACACCTGGCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp TCTAGGCACAAGCCTTCAGGCTACCTACAGCTGGTAGTGCTGGAAATGGCAAATTTATGGAGGGCCAGCTaGATTCCAGACATGGACATC +
Preference number: 4 (lower is better)
Translates to: SRHKPSGYLQLVVLEMANLWRAS*IPDMDI
Trigger: GATGTCCATGTCTGGAATGCAGCTGGCCCTCCATAA...ATTTGCCATTTCCAGCACTACCAGCTGTAGGTAGCCTGAAGGCTTGTGCCTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp AAATGGACTGACCTCAAGTCCTGCAGCCTTTGTCCATCCAGTGGTTCTCCAGCGGCTGAAGGTCACAGTTaGTTAGTAGAAAAGCCACGA +
Preference number: 4 (lower is better)
Translates to: KWTDLKSCSLCPSSGSPAAEGHS*LVEKPR
Trigger: TCGTGGCTTTTCTACTAAGCAACTGTGACCTTCAGC...CGCTGGAGAACCACTGGATGGACAAAGGCTGCAGGACTTGAGGTCAGTCCATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp ATTGTGGAAGGTGCTAGGCATAAAATGTACAGAGTACTACAGCAACAGAGAAGATCCTCCTGCTCTGGGTaGCTGCCCACTGGGCTCTGT +
Preference number: 4 (lower is better)
Translates to: IVEGARHKMYRVLQQQRRSSCSG*LPTGLC
Trigger: ACAGAGCCCAGTGGGCAGGCACCCAGAGCAGGAGGA...TCTTCTCTGTTGCTGTAGTACTCTGTACATTTTATGCCTAGCACCTTCCACAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR CCA 90 bp TCAGGGTTCTTTTATAATGTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTCCAGGAGCATCTTGCTaGGGAGGTTCTCGTTGGGGA +
Preference number: 4 (lower is better)
Translates to: SGFFYNVTQGNTTKGRPSPGASC*GGSRWG
Trigger: TCCCCAACGAGAACCTCCCCAGCAAGATGCTCCTGG...ACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGACATTATAAAAGAACCCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp CCATCACACTCACACACATCAGCCATCATCAAAATAGTGGCCATGCTGGGAAGACCTTTGTCCATCCAGTaGTTCTCCAGCGTGCATCAG +
Preference number: 4 (lower is better)
Translates to: PSHSHTSAIIKIVAMLGRPLSIQ*FSSVHQ
Trigger: CTGATGCACGCTGGAGAACCACTGGATGGACAAAGG...TCTTCCCAGCATGGCCACTATTTTGATGATGGCTGATGTGTGTGAGTGTGATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp AATGCTGTGGGTCCTGGACTGTACACCCTCAGTATACGCCAAGCTGCCTTTGCTACAGGCATAATAGGGTaGAACAGCCTTGAATGTCAC +
Preference number: 4 (lower is better)
Translates to: NAVGPGLYTLSIRQAAFATGIIG*NSLECH
Trigger: GTGACATTCAAGGCTGTTCCACCCTATTATGCCTGT...AGCAAAGGCAGCTTGGCGTATACTGAGGGTGTACAGTCCAGGACCCACAGCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp ATTGTGGAAGGTGCTAGGCATAAAATGTACAGAGTACTACAGCAACAGAGAAGATGGGTGCCTGCCCACTaGGCTCTGTCAGCTCACCGA +
Preference number: 4 (lower is better)
Translates to: IVEGARHKMYRVLQQQRRWVPAH*ALSAHR
Trigger: TCGGTGAGCTGACAGAGCCCAGTGGGCAGGCACCCA...TCTTCTCTGTTGCTGTAGTACTCTGTACATTTTATGCCTAGCACCTTCCACAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR CCA 90 bp CCTTCAAGGATCTCACTGTCTAGGGAAGGGGAAACACAAATATCTCAACACCATGGGGATTGGGGGTGGTaGAGAAGAGGCAGCGAAGTT +
Preference number: 4 (lower is better)
Translates to: PSRISLSREGETQISQHHGDWGW*RRGSEV
Trigger: AACTTCGCTGCCTCTTCTCCACCACCCCCAATCCCC...ATGGTGTTGAGATATTTGTGTTTCCCCTTCCCTAGACAGTGAGATCCTTGAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000559140.2
3UTR CAA 72 bp CTGGACTGTACACCCTCAGTATACGCCAAGCTGCCTTaGCTCAGTAAAATTCCCTGTGATGAGACACCACTC +
Preference number: 4 (lower is better)
Translates to: LDCTPSVYAKLP*LSKIPCDETPL
Trigger: GAGTGGTGTCTCATCACAGGGAATTTTACTGAGCAAAGGCAGCTTGGCGTATACTGAGGGTGTACAGTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CAA 72 bp GTGAGGCCAGGGTTAAGAATTGCAGCAAAAGGAGGCTaGCCTTTGGAGGTGATGATCAGACAGCAGGATAAG +
Preference number: 4 (lower is better)
Translates to: VRPGLRIAAKGG*PLEVMIRQQDK
Trigger: CTTATCCTGCTGTCTGATCATCACCTCCAAAGGCAAGCCTCCTTTTGCTGCAATTCTTAACCCTGGCCTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp CCTTCAAGGATCTCACTGTCTAGGGAAGGGGAAACACAAATATCTCAACACCATGACAGCGTGAACTGTTaGGGCAATGGGCTGAGGAGA +
Preference number: 4 (lower is better)
Translates to: PSRISLSREGETQISQHHDSVNC*GNGLRR
Trigger: TCTCCTCAGCCCATTGCCTCAACAGTTCACGCTGTC...ATGGTGTTGAGATATTTGTGTTTCCCCTTCCCTAGACAGTGAGATCCTTGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR TCA 90 bp CTGCCTTCAAGGATCTCACTGTCTAGGGAAGGGGAAACACAAATATCTCAACACGAACTGTTGACAGCGTaGACTGTTGAGGCAATGGGC +
Preference number: 4 (lower is better)
Translates to: LPSRISLSREGETQISQHELLTA*TVEAMG
Trigger: GCCCATTGCCTCAACAGTTCACGCTGTCAACAGTTC...GTGTTGAGATATTTGTGTTTCCCCTTCCCTAGACAGTGAGATCCTTGAAGGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR GCA 90 bp GTTGGCCTGAGAATCTGGATTTCTAATAAGTTCCCAGGTGAGATCAATGCTGTGACTTGTTCAGGTGGATaGTCGCAGTGGGCTCCTCGT +
Preference number: 4 (lower is better)
Translates to: VGLRIWISNKFPGEINAVTCSGG*SQWAPR
Trigger: ACGAGGAGCCCACTGCGAGCATCCACCTGAACAAGT...CACAGCATTGATCTCACCTGGGAACTTATTAGAAATCCAGATTCTCAGGCCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp TCATGCCAGGTGTTTGTCAGAACCTTGAAAACGAAGGTGGTTTTCAGTGGAGCTTCTCAGGGCTGGTGCTaGAGTTCAGTCTACCTTCCT +
Preference number: 4 (lower is better)
Translates to: SCQVFVRTLKTKVVFSGASQGWC*SSVYLP
Trigger: AGGAAGGTAGACTGAACTGCAGCACCAGCCCTGAGA...AGCTCCACTGAAAACCACCTTCGTTTTCAAGGTTCTGACAAACACCTGGCATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp ATTGTGGAAGGTGCTAGGCATAAAATGTACAGAGTACTACAGCAACAGAGAAGAACATCGGGTGATGGCTaGTGCCATGCGAGCCTGGGT +
Preference number: 4 (lower is better)
Translates to: IVEGARHKMYRVLQQQRRTSGDG*CHASLG
Trigger: ACCCAGGCTCGCATGGCAGCAGCCATCACCCGATGT...TCTTCTCTGTTGCTGTAGTACTCTGTACATTTTATGCCTAGCACCTTCCACAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR CCA 90 bp CAAAGTCAGCACTCCCAGTTGGGTGTTTTATTATTTATTTACTTGACAGGTAACACGTCCTCGGCCTCCTaGATGGCGACGCGGATCTGC +
Preference number: 4 (lower is better)
Translates to: QSQHSQLGVLLFIYLTGNTSSAS*MATRIC
Trigger: GCAGATCCGCGTCGCCATCCAGGAGGCCGAGGACGT...GTTACCTGTCAAGTAAATAAATAATAAAACACCCAACTGGGAGTGCTGACTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp GTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTTCATCTGTATTCACATGTCTCCTCACCTTCCGGTaGTCCTCATTCAACTCAAGG +
Preference number: 4 (lower is better)
Translates to: VTQGNTTKGRPSSSVFTCLLTFR*SSFNSR
Trigger: CCTTGAGTTGAATGAGGACCACCGGAAGGTGAGGAG...ACATGTGAATACAGATGAACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp CACACATCAGCCATCATCAAAATAGTGGCCATGCTGGGAAGAACAGGAGTCCTGGTGATCATGAACTCATaGGCTTTGATGGCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: HTSAIIKIVAMLGRTGVLVIMNS*ALMAAS
Trigger: GGAAGCAGCCATCAAAGCCCATGAGTTCATGATCAC...CAGGACTCCTGTTCTTCCCAGCATGGCCACTATTTTGATGATGGCTGATGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp CTTTTGTCAGGCACAATCTATAACCTCAAAGTCAGCACTCCCAGTTGGGTGTTTCCAGTGGGGACTTTCTaGAAACGCCTTTGCGTTGGG +
Preference number: 4 (lower is better)
Translates to: LLSGTIYNLKVSTPSWVFPVGTF*KRLCVG
Trigger: CCCAACGCAAAGGCGTTTCCAGAAAGTCCCCACTGG...AAACACCCAACTGGGAGTGCTGACTTTGAGGTTATAGATTGTGCCTGACAAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp CTTTTGTCAGGCACAATCTATAACCTCAAAGTCAGCACTCCCAGTTGGGTGTTTGGTCAGGAGTCCTGGTaGTCTAGGCACAAGCCTTCA +
Preference number: 4 (lower is better)
Translates to: LLSGTIYNLKVSTPSWVFGQESW*SRHKPS
Trigger: TGAAGGCTTGTGCCTAGACCACCAGGACTCCTGACC...AAACACCCAACTGGGAGTGCTGACTTTGAGGTTATAGATTGTGCCTGACAAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp AGACATGGACATCGTAACAAAGCAATTCACAGGGAGATGATGAGGTTCACGGGGAAGTCCCAAAAAGCTTaGGCAGGTGTTCCATCACCT +
Preference number: 4 (lower is better)
Translates to: RHGHRNKAIHREMMRFTGKSQKA*AGVPSP
Trigger: AGGTGATGGAACACCTGCTCAAGCTTTTTGGGACTT...CCCCGTGAACCTCATCATCTCCCTGTGAATTGCTTTGTTACGATGTCCATGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp TCATGCCAGGTGTTTGTCAGAACCTTGAAAACGAAGGTGGTTTTCAGTGGAGCTTCATCACCCATGTACTaGAGCTCCTCGACTCTCTTG +
Preference number: 4 (lower is better)
Translates to: SCQVFVRTLKTKVVFSGASSPMY*SSSTLL
Trigger: CAAGAGAGTCGAGGAGCTTCAGTACATGGGTGATGA...AGCTCCACTGAAAACCACCTTCGTTTTCAAGGTTCTGACAAACACCTGGCATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATCTCCTCAGGGCCTCATaGCATACCACCCACAGCTCT +
Preference number: 4 (lower is better)
Translates to: VVTNACKALFHSESTCTYLLRAS*HTTHSS
Trigger: AGAGCTGTGGGTGGTATGTCATGAGGCCCTGAGGAG...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp ACAAAAAGGAATAAGATAAGGCAGCTGCCTTCAAGGATCTCACTGTCTAGGGAAAGACTGAACACTTGCTaGGACTCAAGCCACGGGAGC +
Preference number: 4 (lower is better)
Translates to: TKRNKIRQLPSRISLSRERLNTC*DSSHGS
Trigger: GCTCCCGTGGCTTGAGTCTCAGCAAGTGTTCAGTCT...TTCCCTAGACAGTGAGATCCTTGAAGGCAGCTGCCTTATCTTATTCCTTTTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR GCA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATGTTCTCACCTCCACTTaGAGTGGTGCCACTGTGCCC +
Preference number: 4 (lower is better)
Translates to: VVTNACKALFHSESTCTYVLTST*SGATVP
Trigger: GGGCACAGTGGCACCACTGCAAGTGGAGGTGAGAAC...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp GGGCTCCAAAGCCAGACCACTAGTTTCAAGCCCAACTCTACCAATTTAGCTGTTTTTATACACAGGCCCTaGTCCTCTCATGGCCATGAA +
Preference number: 4 (lower is better)
Translates to: GLQSQTTSFKPNSTNLAVFIHRP*SSHGHE
Trigger: TTCATGGCCATGAGAGGAGCAGGGCCTGTGTATAAA...AACAGCTAAATTGGTAGAGTTGGGCTTGAAACTAGTGGTCTGGCTTTGGAGCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp CTTTTGTCAGGCACAATCTATAACCTCAAAGTCAGCACTCCCAGTTGGGTGTTTCTCAGTCTCCTGAAGTaGTGGGATTACAGGCGTGAG +
Preference number: 4 (lower is better)
Translates to: LLSGTIYNLKVSTPSWVFLSLLK*WDYRRE
Trigger: CTCACGCCTGTAATCCCAGCACTTCAGGAGACTGAG...AAACACCCAACTGGGAGTGCTGACTTTGAGGTTATAGATTGTGCCTGACAAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp CTTTTGTCAGGCACAATCTATAACCTCAAAGTCAGCACTCCCAGTTGGGTGTTTGGTGGATGCTCGCAGTaGGCTCCTCGTCATGATTTT +
Preference number: 4 (lower is better)
Translates to: LLSGTIYNLKVSTPSWVFGGCSQ*APRHDF
Trigger: AAAATCATGACGAGGAGCCCACTGCGAGCATCCACC...AAACACCCAACTGGGAGTGCTGACTTTGAGGTTATAGATTGTGCCTGACAAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp AGCTGCCTTCAAGGATCTCACTGTCTAGGGAAGGGGAAACACAAATATCTCAACACCCCAGGGATTTTCTaGGGTCAACTCTATGCCAGT +
Preference number: 4 (lower is better)
Translates to: SCLQGSHCLGKGKHKYLNTPGIF*GQLYAS
Trigger: ACTGGCATAGAGTTGACCCCAGAAAATCCCTGGGGT...GTTGAGATATTTGTGTTTCCCCTTCCCTAGACAGTGAGATCCTTGAAGGCAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR TCA 90 bp AAAAGGAATAAGATAAGGCAGCTGCCTTCAAGGATCTCACTGTCTAGGGAAGGGTGCTGTGCTAGGTGCTaGAGATACAATGAACGAAGC +
Preference number: 4 (lower is better)
Translates to: KRNKIRQLPSRISLSREGCCARC*RYNERS
Trigger: GCTTCGTTCATTGTATCTTCAGCACCTAGCACAGCA...CCCTTCCCTAGACAGTGAGATCCTTGAAGGCAGCTGCCTTATCTTATTCCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000344870.4
ENST00000559140.2
CDS-3UTR TCA 90 bp GCATGTAGACACAAAATAGCCCCCTATGCTCAGGGAACTAGCTGGAATCACGGGATATCTCAACACCATTaGGTGAGTGTGATGATAGAG +
Preference number: 4 (lower is better)
Translates to: ACRHKIAPYAQGTSWNHGISQHH*VSVMIE
Trigger: CTCTATCATCACACTCACTCAATGGTGTTGAGATAT...CCCGTGATTCCAGCTAGTTCCCTGAGCATAGGGGGCTATTTTGTGTCTACATGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR GCA 90 bp GTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTTCATCTGTATTCACATGTATACTTCAAAGCATGTaGTGTGGTTCTCCAGTCCCG +
Preference number: 4 (lower is better)
Translates to: VTQGNTTKGRPSSSVFTCILQSM*CGSPVP
Trigger: CGGGACTGGAGAACCACAGCACATGCTTTGAAGTAT...ACATGTGAATACAGATGAACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp CCATCACACTCACACACATCAGCCATCATCAAAATAGTGGCCATGCTGGGAAGAAATAATCCATACACTTaGGGAAGATCTCAGGGCTGG +
Preference number: 4 (lower is better)
Translates to: PSHSHTSAIIKIVAMLGRNNPYT*GRSQGW
Trigger: CCAGCCCTGAGATCTTCCGCAAGTGTATGGATTATT...TCTTCCCAGCATGGCCACTATTTTGATGATGGCTGATGTGTGTGAGTGTGATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATCTCTCAGGAAGCCCTTaGATGGCCTATCGAGGACAG +
Preference number: 4 (lower is better)
Translates to: VVTNACKALFHSESTCTYLSGSP*MAYRGQ
Trigger: CTGTCCTCGATAGGCCATGCAAGGGCTTCCTGAGAG...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp CTTTTGTCAGGCACAATCTATAACCTCAAAGTCAGCACTCCCAGTTGGGTGTTTACTGACCTCAAGTCCTaGAGCCTTTGTCCATCCAGT +
Preference number: 4 (lower is better)
Translates to: LLSGTIYNLKVSTPSWVFTDLKS*SLCPSS
Trigger: ACTGGATGGACAAAGGCTGCAGGACTTGAGGTCAGT...AAACACCCAACTGGGAGTGCTGACTTTGAGGTTATAGATTGTGCCTGACAAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATCCTGACCTCATGATCTaGCCGCCTCAGTCTCCTGAA +
Preference number: 4 (lower is better)
Translates to: VVTNACKALFHSESTCTYPDLMI*PPQSPE
Trigger: TTCAGGAGACTGAGGCGGGCAGATCATGAGGTCAGG...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp CACACATCAGCCATCATCAAAATAGTGGCCATGCTGGGAAGAACAGGAGTCCTGAGGTTTCTTTTTGGGTaGCTTCATACCAATCAGGAC +
Preference number: 4 (lower is better)
Translates to: HTSAIIKIVAMLGRTGVLRFLFG*LHTNQD
Trigger: GTCCTGATTGGTATGAAGCCACCCAAAAAGAAACCT...CAGGACTCCTGTTCTTCCCAGCATGGCCACTATTTTGATGATGGCTGATGTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATGGCCATGAAATCCTCTaGTGTTGTCAGGACCCCTGG +
Preference number: 4 (lower is better)
Translates to: VVTNACKALFHSESTCTYGHEIL*CCQDPW
Trigger: CCAGGGGTCCTGACAACACCAGAGGATTTCATGGCC...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CAA 72 bp TTAGTAACCTTCCCAAGGTCACAAAATAGTGAGAGATaGGGGGTCAAATGGACTGACCTCAAGTCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: LVTFPRSQNSER*GVKWTDLKSCS
Trigger: GCTGCAGGACTTGAGGTCAGTCCATTTGACCCCCAATCTCTCACTATTTTGTGACCTTGGGAAGGTTACTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp GGGCTCCAAAGCCAGACCACTAGTTTCAAGCCCAACTCTACCAATTTAGCTGTTATGTTCTCTTTGCCCTaGGATTCTGTGATCATGAAC +
Preference number: 4 (lower is better)
Translates to: GLQSQTTSFKPNSTNLAVMFSLP*DSVIMN
Trigger: GTTCATGATCACAGAATCTCAGGGCAAAGAGAACAT...AACAGCTAAATTGGTAGAGTTGGGCTTGAAACTAGTGGTCTGGCTTTGGAGCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp AAGCTGCCTTTGCTCAGTAAAATTCCCTGTGATGAGACACCACTCAGGCTGCCAATAGGCTTAGCTACTTaGTGTTGCACAAGAGAACTT +
Preference number: 4 (lower is better)
Translates to: KLPLLSKIPCDETPLRLPIGLAT*CCTREL
Trigger: AAGTTCTCTTGTGCAACAGCAAGTAGCTAAGCCTAT...TGGCAGCCTGAGTGGTGTCTCATCACAGGGAATTTTACTGAGCAAAGGCAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp GTTGGCCTGAGAATCTGGATTTCTAATAAGTTCCCAGGTGAGATCAATGCTGTGACGCCAAGCTGCCTTTaGTCAGTAAAATTCCCTGTG +
Preference number: 4 (lower is better)
Translates to: VGLRIWISNKFPGEINAVTPSCL*SVKFPV
Trigger: CACAGGGAATTTTACTGAGCAAAGGCAGCTTGGCGT...CACAGCATTGATCTCACCTGGGAACTTATTAGAAATCCAGATTCTCAGGCCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp CCATCACACTCACACACATCAGCCATCATCAAAATAGTGGCCATGCTGGGAAGACAGTATACGCCAAGCTaGCTTTGCTCAGTAAAATTC +
Preference number: 4 (lower is better)
Translates to: PSHSHTSAIIKIVAMLGRQYTPS*LCSVKF
Trigger: GAATTTTACTGAGCAAAGGCAGCTTGGCGTATACTG...TCTTCCCAGCATGGCCACTATTTTGATGATGGCTGATGTGTGTGAGTGTGATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATGTGAGATCAATGCTGTaGGTCCTGGACTGTACACCC +
Preference number: 4 (lower is better)
Translates to: VVTNACKALFHSESTCTYVRSML*VLDCTP
Trigger: GGGTGTACAGTCCAGGACCCACAGCATTGATCTCAC...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CAA 72 bp TACAAGACACCATGCTATAGGCTTAGCTACTTGCTGTaGCACAAGAGAACTTTCCTGAACTCTCAGGAAGCC +
Preference number: 4 (lower is better)
Translates to: YKTPCYRLSYLL*HKRTFLNSQEA
Trigger: GGCTTCCTGAGAGTTCAGGAAAGTTCTCTTGTGCAACAGCAAGTAGCTAAGCCTATAGCATGGTGTCTTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CAA 72 bp TGGTCCTACAAGACACCATGCTATAGGCTTAGCTACTaGCTGTTGCACAAGAGAACTTTCCTGAACTCTCAG +
Preference number: 4 (lower is better)
Translates to: WSYKTPCYRLSY*LLHKRTFLNSQ
Trigger: CTGAGAGTTCAGGAAAGTTCTCTTGTGCAACAGCAAGTAGCTAAGCCTATAGCATGGTGTCTTGTAGGACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp TCAGGGTTCTTTTATAATGTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTTCCGCACTGATGAGATaGCTCCAAAAGTCCCAAAAA +
Preference number: 4 (lower is better)
Translates to: SGFFYNVTQGNTTKGRPSSALMR*LQKSQK
Trigger: TTTTTGGGACTTTTGGAGTCATCTCATCAGTGCGGA...ACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGACATTATAAAAGAACCCTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp GTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTTCATCTGTATTCACATGTTCCTACAAGACACCATaGTATAGGCTTAGCTACTTG +
Preference number: 4 (lower is better)
Translates to: VTQGNTTKGRPSSSVFTCSYKTP*YRLSYL
Trigger: CAAGTAGCTAAGCCTATAGCATGGTGTCTTGTAGGA...ACATGTGAATACAGATGAACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp GTTGGCCTGAGAATCTGGATTTCTAATAAGTTCCCAGGTGAGATCAATGCTGTGTCCTACTTCAGCAGCTaGATGTGTGATACTGGCATA +
Preference number: 4 (lower is better)
Translates to: VGLRIWISNKFPGEINAVSYFSS*MCDTGI
Trigger: TATGCCAGTATCACACATGCAGCTGCTGAAGTAGGA...CACAGCATTGATCTCACCTGGGAACTTATTAGAAATCCAGATTCTCAGGCCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp ATGATAGAGATACGCATTCAGTCAACAAACATGTCCTATGTGCTGGGTGCTGTGAAACAGGGGATAGTGTaGATCCTGTTCTTGGCTACA +
Preference number: 4 (lower is better)
Translates to: MIEIRIQSTNMSYVLGAVKQGIV*ILFLAT
Trigger: TGTAGCCAAGAACAGGATCCACACTATCCCCTGTTT...CACAGCACCCAGCACATAGGACATGTTTGTTGACTGAATGCGTATCTCTATCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR TCA 90 bp TCATGCCAGGTGTTTGTCAGAACCTTGAAAACGAAGGTGGTTTTCAGTGGAGCTTGTTTGTCAGAACCTTaGAAACGAAGGTGGTTTTCA +
Preference number: 4 (lower is better)
Translates to: SCQVFVRTLKTKVVFSGACLSEP*KRRWFS
Trigger: TGAAAACCACCTTCGTTTTCAAGGTTCTGACAAACA...AGCTCCACTGAAAACCACCTTCGTTTTCAAGGTTCTGACAAACACCTGGCATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp GGGCTCCAAAGCCAGACCACTAGTTTCAAGCCCAACTCTACCAATTTAGCTGTTTTTGGGCAGATTAAATaGGATAATGCATGGAAAGCT +
Preference number: 4 (lower is better)
Translates to: GLQSQTTSFKPNSTNLAVFGQIK*DNAWKA
Trigger: AGCTTTCCATGCATTATCTCATTTAATCTGCCCAAA...AACAGCTAAATTGGTAGAGTTGGGCTTGAAACTAGTGGTCTGGCTTTGGAGCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp ATTGTGGAAGGTGCTAGGCATAAAATGTACAGAGTACTACAGCAACAGAGAAGATGCTGTGCTAGGTGCTaGAGATACAATGAACGAAGC +
Preference number: 4 (lower is better)
Translates to: IVEGARHKMYRVLQQQRRCCARC*RYNERS
Trigger: GCTTCGTTCATTGTATCTTCAGCACCTAGCACAGCA...TCTTCTCTGTTGCTGTAGTACTCTGTACATTTTATGCCTAGCACCTTCCACAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR GCA 90 bp TCAGGGTTCTTTTATAATGTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTGTGAGAAACCCTAAATaGCCTGACTTGATCACTATG +
Preference number: 4 (lower is better)
Translates to: SGFFYNVTQGNTTKGRPSVRNPK*PDLITM
Trigger: CATAGTGATCAAGTCAGGGCATTTAGGGTTTCTCAC...ACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGACATTATAAAAGAACCCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp GTTGGCCTGAGAATCTGGATTTCTAATAAGTTCCCAGGTGAGATCAATGCTGTGATTGCTGGAGGCATTTaGCAGTTAACACGAACTCTT +
Preference number: 4 (lower is better)
Translates to: VGLRIWISNKFPGEINAVIAGGI*QLTRTL
Trigger: AAGAGTTCGTGTTAACTGGCAAATGCCTCCAGCAAT...CACAGCATTGATCTCACCTGGGAACTTATTAGAAATCCAGATTCTCAGGCCAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp TCATGCCAGGTGTTTGTCAGAACCTTGAAAACGAAGGTGGTTTTCAGTGGAGCTGTGGTCTTCAAACCATaGCGTACCGATTTATGTATA +
Preference number: 4 (lower is better)
Translates to: SCQVFVRTLKTKVVFSGAVVFKP*RTDLCI
Trigger: TATACATAAATCGGTACGCCATGGTTTGAAGACCAC...AGCTCCACTGAAAACCACCTTCGTTTTCAAGGTTCTGACAAACACCTGGCATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp CTTTTGTCAGGCACAATCTATAACCTCAAAGTCAGCACTCCCAGTTGGGTGTTTAATCCAGAACATTGCTaGAGGCATTTGCCAGTTAAC +
Preference number: 4 (lower is better)
Translates to: LLSGTIYNLKVSTPSWVFNPEHC*RHLPVN
Trigger: GTTAACTGGCAAATGCCTCCAGCAATGTTCTGGATT...AAACACCCAACTGGGAGTGCTGACTTTGAGGTTATAGATTGTGCCTGACAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp CAAAGTCAGCACTCCCAGTTGGGTGTTTTATTATTTATTTACTTGACAGGTAACCTCCTCTCATGGCCATaGAATCCTCTGGTGTTGTCA +
Preference number: 4 (lower is better)
Translates to: QSQHSQLGVLLFIYLTGNLLSWP*NPLVLS
Trigger: TGACAACACCAGAGGATTTCATGGCCATGAGAGGAG...GTTACCTGTCAAGTAAATAAATAATAAAACACCCAACTGGGAGTGCTGACTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp GTTGGCCTGAGAATCTGGATTTCTAATAAGTTCCCAGGTGAGATCAATGCTGTGCACGTAGGAAGGTGCTaGATAAATATTAGCACCTTT +
Preference number: 4 (lower is better)
Translates to: VGLRIWISNKFPGEINAVHVGRC*INISTF
Trigger: AAAGGTGCTAATATTTATTCAGCACCTTCCTACGTG...CACAGCATTGATCTCACCTGGGAACTTATTAGAAATCCAGATTCTCAGGCCAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp TGCCTTCAAGGATCTCACTGTCTAGGGAAGGGGAAACACAAATATCTCAACACCCGAAGTTTTAAAGGCTaGCTAGAAATCAGTCAATCA +
Preference number: 4 (lower is better)
Translates to: CLQGSHCLGKGKHKYLNTRSFKG*LEISQS
Trigger: TGATTGACTGATTTCTAGTCAGCCTTTAAAACTTCG...GGTGTTGAGATATTTGTGTTTCCCCTTCCCTAGACAGTGAGATCCTTGAAGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR GCA 90 bp CAAAGTCAGCACTCCCAGTTGGGTGTTTTATTATTTATTTACTTGACAGGTAACAGATCTCAGGGCTGGTaGTGCAGTTCAGTCTACCTT +
Preference number: 4 (lower is better)
Translates to: QSQHSQLGVLLFIYLTGNRSQGW*CSSVYL
Trigger: AAGGTAGACTGAACTGCAGCACCAGCCCTGAGATCT...GTTACCTGTCAAGTAAATAAATAATAAAACACCCAACTGGGAGTGCTGACTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CCA 90 bp CAAAGTCAGCACTCCCAGTTGGGTGTTTTATTATTTATTTACTTGACAGGTAACGCACGGGGAGGCATTTaGACTCAGAAAGAGATTCTG +
Preference number: 4 (lower is better)
Translates to: QSQHSQLGVLLFIYLTGNARGGI*TQKEIL
Trigger: CAGAATCTCTTTCTGAGTCCAAATGCCTCCCCGTGC...GTTACCTGTCAAGTAAATAAATAATAAAACACCCAACTGGGAGTGCTGACTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CAA 72 bp AATTCCATTCTGTCATGCCAGGTGTTTGTCAGAACCTaGAAAACGAAGGTGGTTTTCAGTGGAGCTTGTATT +
Preference number: 4 (lower is better)
Translates to: NSILSCQVFVRT*KTKVVFSGACI
Trigger: AATACAAGCTCCACTGAAAACCACCTTCGTTTTCAAGGTTCTGACAAACACCTGGCATGACAGAATGGAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp CAAAGTCAGCACTCCCAGTTGGGTGTTTTATTATTTATTTACTTGACAGGTAACACAAGAGAACTTTCCTaGACTCTCAGGAAGCCCTTG +
Preference number: 4 (lower is better)
Translates to: QSQHSQLGVLLFIYLTGNTRELS*TLRKPL
Trigger: CAAGGGCTTCCTGAGAGTTCAGGAAAGTTCTCTTGT...GTTACCTGTCAAGTAAATAAATAATAAAACACCCAACTGGGAGTGCTGACTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR TCA 90 bp ACAAAAAGGAATAAGATAAGGCAGCTGCCTTCAAGGATCTCACTGTCTAGGGAAATATCTCAACACCATTaGGTGAGTGTGATGATAGAG +
Preference number: 4 (lower is better)
Translates to: TKRNKIRQLPSRISLSREISQHH*VSVMIE
Trigger: CTCTATCATCACACTCACTCAATGGTGTTGAGATAT...TTCCCTAGACAGTGAGATCCTTGAAGGCAGCTGCCTTATCTTATTCCTTTTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000344870.4
ENST00000559140.2
CDS-3UTR CCA 90 bp GTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTTCATCTGTATTCACATGTGTCAGCACTCCCAGTTaGGTGTTTTATTATTTATTT +
Preference number: 4 (lower is better)
Translates to: VTQGNTTKGRPSSSVFTCVSTPS*VFYYLF
Trigger: AAATAAATAATAAAACACCCAACTGGGAGTGCTGAC...ACATGTGAATACAGATGAACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR GCA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATGTAGTGACTAATGCCTaGAAAGCACTTTTCCATTCA +
Preference number: 4 (lower is better)
Translates to: VVTNACKALFHSESTCTYVVTNA*KALFHS
Trigger: TGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
3UTR CAA 72 bp CCCTGGGGTACAGTGAGAAACCCTAAATGCCCTGACTaGATCACTATGCATTATAAACATGTAACAAAGTTT +
Preference number: 4 (lower is better)
Translates to: PWGTVRNPKCPD*ITMHYKHVTKF
Trigger: AAACTTTGTTACATGTTTATAATGCATAGTGATCAAGTCAGGGCATTTAGGGTTTCTCACTGTACCCCAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 90 bp ATCTGCACCGCCGTCTTGGGCCCGGGCCGAGCCTCCCCGCCGGACTaGGCCATGGCTCGCGGGACTGCGGCGCCGCCGGGGTCCTCACGC +
Preference number: 5 (lower is better)
Translates to: ICTAVLGPGRASPPD*AMARGTAAPPGSSR
Trigger: GCGTGAGGACCCCGGCGGCGCCGCAGTCCCGCGAGCCATGGCCCAGTCCGGCGGGGAGGCTCGGCCCGGGCCCAAGACGGCGGTGCAGAT
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 90 bp CGTCCTCGGCCTCCTGGATGGCGACGCGGATCTGCACCGCCGTCTTaGGCCCGGGCCGAGCCTCCCCGCCGGACTGGGCCATGGCTCGCG +
Preference number: 5 (lower is better)
Translates to: RPRPPGWRRGSAPPS*ARAEPPRRTGPWLA
Trigger: CGCGAGCCATGGCCCAGTCCGGCGGGGAGGCTCGGCCCGGGCCCAAGACGGCGGTGCAGATCCGCGTCGCCATCCAGGAGGCCGAGGACG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000299213.10
ENST00000344870.4
CDS GCA 90 bp TCCAACTCGTCCACGTCCTCGGCCTCCTGGATGGCGACGCGGATCTaGACCGCCGTCTTGGGCCCGGGCCGAGCCTCCCCGCCGGACTGG +
Preference number: 5 (lower is better)
Translates to: SNSSTSSASWMATRI*TAVLGPGRASPPDW
Trigger: CCAGTCCGGCGGGGAGGCTCGGCCCGGGCCCAAGACGGCGGTGCAGATCCGCGTCGCCATCCAGGAGGCCGAGGACGTGGACGAGTTGGA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000299213.10
ENST00000344870.4
CDS CCA 90 bp GGACTTGTGCACGGGGAGGCATTTGGACTCAGAAAGAGATTCTGGTaGCCAGACGGGCTGAGCTTGTTGGTGGCCGCGTGCCGTCGGCCC +
Preference number: 5 (lower is better)
Translates to: GLVHGEAFGLRKRFW*PDGLSLLVAACRRP
Trigger: GGGCCGACGGCACGCGGCCACCAACAAGCTCAGCCCGTCTGGCCACCAGAATCTCTTTCTGAGTCCAAATGCCTCCCCGTGCACAAGTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 90 bp CAAGGACTTGTGCACGGGGAGGCATTTGGACTCAGAAAGAGATTCTaGTGGCCAGACGGGCTGAGCTTGTTGGTGGCCGCGTGCCGTCGG +
Preference number: 5 (lower is better)
Translates to: QGLVHGEAFGLRKRF*WPDGLSLLVAACRR
Trigger: CCGACGGCACGCGGCCACCAACAAGCTCAGCCCGTCTGGCCACCAGAATCTCTTTCTGAGTCCAAATGCCTCCCCGTGCACAAGTCCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS TCA 90 bp TCTCGGCTTGGCGACGCCTCCGGACCCAGGGGCTGCCAGAGGGAGTaGCGCTGCTGTCAGAGGAATAATCCATACACTTGCGGAAGATCT +
Preference number: 5 (lower is better)
Translates to: SRLGDASGPRGCQRE*RCCQRNNPYTCGRS
Trigger: AGATCTTCCGCAAGTGTATGGATTATTCCTCTGACAGCAGCGTCACTCCCTCTGGCAGCCCCTGGGTCCGGAGGCGTCGCCAAGCCGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS GCA 90 bp CACCTCCTGGAATCCCCCATCAGCAAGTGTCCGCTGTACCTGGCCTaGTACCACCTAAAGACTGAGCGCAGCCAGCAGGACTGGGAAAGG +
Preference number: 5 (lower is better)
Translates to: HLLESPISKCPLYLA*YHLKTERSQQDWER
Trigger: CCTTTCCCAGTCCTGCTGGCTGCGCTCAGTCTTTAGGTGGTAGCAGGCCAGGTACAGCGGACACTTGCTGATGGGGGATTCCAGGAGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000559316.2
ENST00000560052.1
CDS CCA 90 bp GATCTCAGGGCTGGTGCTGCAGTTCAGTCTACCTTCCTCCGCCAGTaGGGACTTTCTGGAAACGCCTTTGCGTTGGGCCAAGGGGCTGCT +
Preference number: 5 (lower is better)
Translates to: DLRAGAAVQSTFLRQ*GLSGNAFALGQGAA
Trigger: AGCAGCCCCTTGGCCCAACGCAAAGGCGTTTCCAGAAAGTCCCCACTGGCGGAGGAAGGTAGACTGAACTGCAGCACCAGCCCTGAGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 90 bp AGTAGAGATCATAGACCAGGAGCATCTTGCTGGGGAGGTTCTCGTTaGGGAACAGTGGGACGGGGGTGGTCCTCCTCACCTTCCGGTGGT +
Preference number: 5 (lower is better)
Translates to: SRDHRPGASCWGGSR*GTVGRGWSSSPSGG
Trigger: ACCACCGGAAGGTGAGGAGGACCACCCCCGTCCCACTGTTCCCCAACGAGAACCTCCCCAGCAAGATGCTCCTGGTCTATGATCTCTACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000299213.10
ENST00000559316.2
CDS CCA 90 bp TGGTGCTGCAGTTCAGTCTACCTTCCTCCGCCAGTGGGGACTTTCTaGAAACGCCTTTGCGTTGGGCCAAGGGGCTGCTCCAAGGACTTG +
Preference number: 5 (lower is better)
Translates to: WCCSSVYLPPPVGTF*KRLCVGPRGCSKDL
Trigger: CAAGTCCTTGGAGCAGCCCCTTGGCCCAACGCAAAGGCGTTTCCAGAAAGTCCCCACTGGCGGAGGAAGGTAGACTGAACTGCAGCACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 90 bp GCCCACTGGGCTCTGTCAGCTCACCGAAGAACCCCAGGGATTTTCTaGGGTCAACTCTATGCCAGTGGGCAGCAGGAAGGGCTTCAGACT +
Preference number: 5 (lower is better)
Translates to: AHWALSAHRRTPGIF*GQLYASGQQEGLQT
Trigger: AGTCTGAAGCCCTTCCTGCTGCCCACTGGCATAGAGTTGACCCCAGAAAATCCCTGGGGTTCTTCGGTGAGCTGACAGAGCCCAGTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR CAA 90 bp AAGCTGCCTTTGCTCAGTAAAATTCCCTGTGATGAGACACCACTCAGGCTGCCAGACGGGCTGAGCTTGTaGGTGGCCGCGTGCCGTCGG +
Preference number: 5 (lower is better)
Translates to: KLPLLSKIPCDETPLRLPDGLSL*VAACRR
Trigger: CCGACGGCACGCGGCCACCAACAAGCTCAGCCCGTC...TGGCAGCCTGAGTGGTGTCTCATCACAGGGAATTTTACTGAGCAAAGGCAGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp AAGCTGCCTTTGCTCAGTAAAATTCCCTGTGATGAGACACCACTCAGGCTGCCAGGTCCCCATCTCGGCTaGGCGACGCCTCCGGACCCA +
Preference number: 5 (lower is better)
Translates to: KLPLLSKIPCDETPLRLPGPHLG*ATPPDP
Trigger: TGGGTCCGGAGGCGTCGCCAAGCCGAGATGGGGACC...TGGCAGCCTGAGTGGTGTCTCATCACAGGGAATTTTACTGAGCAAAGGCAGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS TCA 90 bp CTGGGGTCAACTCTATGCCAGTGGGCAGCAGGAAGGGCTTCAGACTaGACACTTGCTGAGACTCAAGCCACGGGAGCTGGGCAGTTCTGT +
Preference number: 5 (lower is better)
Translates to: LGSTLCQWAAGRASD*TLAETQATGAGQFC
Trigger: ACAGAACTGCCCAGCTCCCGTGGCTTGAGTCTCAGCAAGTGTTCAGTCTGAAGCCCTTCCTGCTGCCCACTGGCATAGAGTTGACCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS GCA 90 bp TCCACCAGTTTCTTGATCAACTCCTCATCCGGGGGCTTCCACTCCTaGTCCAGGTCCTCACGCTCGTTCTCACCTCCACTTGCAGTGGTG +
Preference number: 5 (lower is better)
Translates to: STSFLINSSSGGFHS*SRSSRSFSPPLAVV
Trigger: CACCACTGCAAGTGGAGGTGAGAACGAGCGTGAGGACCTGGAGCAGGAGTGGAAGCCCCCGGATGAGGAGTTGATCAAGAAACTGGTGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000299213.10
ENST00000559316.2
CDS GCA 90 bp TGGAAACGCCTTTGCGTTGGGCCAAGGGGCTGCTCCAAGGACTTGTaGACGGGGAGGCATTTGGACTCAGAAAGAGATTCTGGTGGCCAG +
Preference number: 5 (lower is better)
Translates to: WKRLCVGPRGCSKDL*TGRHLDSERDSGGQ
Trigger: CTGGCCACCAGAATCTCTTTCTGAGTCCAAATGCCTCCCCGTGCACAAGTCCTTGGAGCAGCCCCTTGGCCCAACGCAAAGGCGTTTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 90 bp TTGGGCCAAGGGGCTGCTCCAAGGACTTGTGCACGGGGAGGCATTTaGACTCAGAAAGAGATTCTGGTGGCCAGACGGGCTGAGCTTGTT +
Preference number: 5 (lower is better)
Translates to: LGQGAAPRTCARGGI*TQKEILVARRAELV
Trigger: AACAAGCTCAGCCCGTCTGGCCACCAGAATCTCTTTCTGAGTCCAAATGCCTCCCCGTGCACAAGTCCTTGGAGCAGCCCCTTGGCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp AAGCTGCCTTTGCTCAGTAAAATTCCCTGTGATGAGACACCACTCAGGCTGCCACCAGACGGGCTGAGCTaGTTGGTGGCCGCGTGCCGT +
Preference number: 5 (lower is better)
Translates to: KLPLLSKIPCDETPLRLPPDGLS*LVAACR
Trigger: ACGGCACGCGGCCACCAACAAGCTCAGCCCGTCTGG...TGGCAGCCTGAGTGGTGTCTCATCACAGGGAATTTTACTGAGCAAAGGCAGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS GCA 90 bp CAAACAGGGGATAGTGTGGATCCTGTTCTTGGCTACATCTCCTCCTaGTCTGGGTGCCTGCCCACTGGGCTCTGTCAGCTCACCGAAGAA +
Preference number: 5 (lower is better)
Translates to: QTGDSVDPVLGYISS*SGCLPTGLCQLTEE
Trigger: TTCTTCGGTGAGCTGACAGAGCCCAGTGGGCAGGCACCCAGAGCAGGAGGAGATGTAGCCAAGAACAGGATCCACACTATCCCCTGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR CAA 90 bp CAAGGATCTCACTGTCTAGGGAAGGGGAAACACAAATATCTCAACACCATTGAGATCTGCACCGCCGTCTaGGGCCCGGGCCGAGCCTCC +
Preference number: 5 (lower is better)
Translates to: QGSHCLGKGKHKYLNTIEICTAV*GPGRAS
Trigger: GGAGGCTCGGCCCGGGCCCAAGACGGCGGTGCAGAT...CTCAATGGTGTTGAGATATTTGTGTTTCCCCTTCCCTAGACAGTGAGATCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000344870.4
CDS GCA 90 bp TTTGCCCTGAGATTCTGTGATCATGAACTCATGGGCTTTGATGGCTaGTTCCACCTCCTCGAACTCCACGATGGCGCACTCCTGGGTCCC +
Preference number: 5 (lower is better)
Translates to: FALRFCDHELMGFDG*FHLLELHDGALLGP
Trigger: GGGACCCAGGAGTGCGCCATCGTGGAGTTCGAGGAGGTGGAAGCAGCCATCAAAGCCCATGAGTTCATGATCACAGAATCTCAGGGCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 90 bp GTATTTATACACAGGCCCTGCTCCTCTCATGGCCATGAAATCCTCTaGTGTTGTCAGGACCCCTGGGCAACCTCAGCACCCCTACGGGTA +
Preference number: 5 (lower is better)
Translates to: VFIHRPCSSHGHEIL*CCQDPWATSAPLRV
Trigger: TACCCGTAGGGGTGCTGAGGTTGCCCAGGGGTCCTGACAACACCAGAGGATTTCATGGCCATGAGAGGAGCAGGGCCTGTGTATAAATAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp AGACATGGACATCGTAACAAAGCAATTCACAGGGAGATGATGAGGTTCACGGGGCTGGGGAGGTTCTCGTaGGGGAACAGTGGGACGGGG +
Preference number: 5 (lower is better)
Translates to: RHGHRNKAIHREMMRFTGLGRFS*GNSGTG
Trigger: CCCCGTCCCACTGTTCCCCAACGAGAACCTCCCCAG...CCCCGTGAACCTCATCATCTCCCTGTGAATTGCTTTGTTACGATGTCCATGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp CAAGAAGAGCTGGTGAAGCCCAGATGGCCCGATGGCCAAGGAGCAGGTGGAGTGTACGCCAAGCTGCCTTaGCTCAGTAAAATTCCCTGT +
Preference number: 5 (lower is better)
Translates to: QEELVKPRWPDGQGAGGVYAKLP*LSKIPC
Trigger: ACAGGGAATTTTACTGAGCAAAGGCAGCTTGGCGTA...CACTCCACCTGCTCCTTGGCCATCGGGCCATCTGGGCTTCACCAGCTCTTCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 90 bp TCGTTGGGGAACAGTGGGACGGGGGTGGTCCTCCTCACCTTCCGGTaGTCCTCATTCAACTCAAGGACCACTGAATACTTCAAAGCATGT +
Preference number: 5 (lower is better)
Translates to: SLGNSGTGVVLLTFR*SSFNSRTTEYFKAC
Trigger: ACATGCTTTGAAGTATTCAGTGGTCCTTGAGTTGAATGAGGACCACCGGAAGGTGAGGAGGACCACCCCCGTCCCACTGTTCCCCAACGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000299213.10
ENST00000559316.2
CDS-3UTR CAA 90 bp AAATGGACTGACCTCAAGTCCTGCAGCCTTTGTCCATCCAGTGGTTCTCCAGCGAGCTCTCTCCCAGGTTaGAGGATCCGCACTGATGAG +
Preference number: 5 (lower is better)
Translates to: KWTDLKSCSLCPSSGSPASSLPG*RIRTDE
Trigger: CTCATCAGTGCGGATCCTCAAACCTGGGAGAGAGCT...CGCTGGAGAACCACTGGATGGACAAAGGCTGCAGGACTTGAGGTCAGTCCATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 90 bp TGCTGTCAGAGGAATAATCCATACACTTGCGGAAGATCTCAGGGCTaGTGCTGCAGTTCAGTCTACCTTCCTCCGCCAGTGGGGACTTTC +
Preference number: 5 (lower is better)
Translates to: CCQRNNPYTCGRSQG*CCSSVYLPPPVGTF
Trigger: GAAAGTCCCCACTGGCGGAGGAAGGTAGACTGAACTGCAGCACCAGCCCTGAGATCTTCCGCAAGTGTATGGATTATTCCTCTGACAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp AAATGGACTGACCTCAAGTCCTGCAGCCTTTGTCCATCCAGTGGTTCTCCAGCGCTCTTGTTCAGGGACTaGTTCAGGTGGATGCTCGCA +
Preference number: 5 (lower is better)
Translates to: KWTDLKSCSLCPSSGSPALLFRD*FRWMLA
Trigger: TGCGAGCATCCACCTGAACAAGTCCCTGAACAAGAG...CGCTGGAGAACCACTGGATGGACAAAGGCTGCAGGACTTGAGGTCAGTCCATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp GGTGCAGAGGCATGTAGACACAAAATAGCCCCCTATGCTCAGGGAACTAGCTGGGTGTGGATCCTGTTCTaGGCTACATCTCCTCCTGCT +
Preference number: 5 (lower is better)
Translates to: GAEACRHKIAPYAQGTSWVWILF*ATSPPA
Trigger: AGCAGGAGGAGATGTAGCCAAGAACAGGATCCACAC...CCAGCTAGTTCCCTGAGCATAGGGGGCTATTTTGTGTCTACATGCCTCTGCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR CAA 90 bp CAAAGTCAGCACTCCCAGTTGGGTGTTTTATTATTTATTTACTTGACAGGTAACATCTGCACCGCCGTCTaGGGCCCGGGCCGAGCCTCC +
Preference number: 5 (lower is better)
Translates to: QSQHSQLGVLLFIYLTGNICTAV*GPGRAS
Trigger: GGAGGCTCGGCCCGGGCCCAAGACGGCGGTGCAGAT...GTTACCTGTCAAGTAAATAAATAATAAAACACCCAACTGGGAGTGCTGACTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp CTTTTGTCAGGCACAATCTATAACCTCAAAGTCAGCACTCCCAGTTGGGTGTTTCTCCTGGGTCCCCACTaGGCTGTAGCGGCTGCTGAT +
Preference number: 5 (lower is better)
Translates to: LLSGTIYNLKVSTPSWVFLLGPH*AVAAAD
Trigger: ATCAGCAGCCGCTACAGCCAAGTGGGGACCCAGGAG...AAACACCCAACTGGGAGTGCTGACTTTGAGGTTATAGATTGTGCCTGACAAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp AGACATGGACATCGTAACAAAGCAATTCACAGGGAGATGATGAGGTTCACGGGGGGGTCAGAGGAGCTGTaGGCAGAAGACTCATCACCC +
Preference number: 5 (lower is better)
Translates to: RHGHRNKAIHREMMRFTGGSEEL*AEDSSP
Trigger: GGGTGATGAGTCTTCTGCCAACAGCTCCTCTGACCC...CCCCGTGAACCTCATCATCTCCCTGTGAATTGCTTTGTTACGATGTCCATGTCT
52% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp TCAGGGTTCTTTTATAATGTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTGGAAACGCCTTTGCGTaGGGCCAAGGGGCTGCTCCA +
Preference number: 5 (lower is better)
Translates to: SGFFYNVTQGNTTKGRPSGNAFA*GQGAAP
Trigger: TGGAGCAGCCCCTTGGCCCAACGCAAAGGCGTTTCC...ACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGACATTATAAAAGAACCCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp AAGCTGCCTTTGCTCAGTAAAATTCCCTGTGATGAGACACCACTCAGGCTGCCAACTCTCAGGAAGCCCTaGCATGGCCTATCGAGGACA +
Preference number: 5 (lower is better)
Translates to: KLPLLSKIPCDETPLRLPTLRKP*HGLSRT
Trigger: TGTCCTCGATAGGCCATGCAAGGGCTTCCTGAGAGT...TGGCAGCCTGAGTGGTGTCTCATCACAGGGAATTTTACTGAGCAAAGGCAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS TCA 90 bp AAAATAGAAGGTATTTATACACAGGCCCTGCTCCTCTCATGGCCATaGAATCCTCTGGTGTTGTCAGGACCCCTGGGCAACCTCAGCACC +
Preference number: 5 (lower is better)
Translates to: KIEGIYTQALLLSWP*NPLVLSGPLGNLST
Trigger: GGTGCTGAGGTTGCCCAGGGGTCCTGACAACACCAGAGGATTTCATGGCCATGAGAGGAGCAGGGCCTGTGTATAAATACCTTCTATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS GCA 90 bp ACTGAAGCTCCTCGACTCTCTTGTTCAGGGACTTGTTCAGGTGGATaGTCGCAGTGGGCTCCTCGTCATGATTTTTGTCTTTGGCAGGTT +
Preference number: 5 (lower is better)
Translates to: TEAPRLSCSGTCSGG*SQWAPRHDFCLWQV
Trigger: AACCTGCCAAAGACAAAAATCATGACGAGGAGCCCACTGCGAGCATCCACCTGAACAAGTCCCTGAACAAGAGAGTCGAGGAGCTTCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 90 bp CCTCGACTCTCTTGTTCAGGGACTTGTTCAGGTGGATGCTCGCAGTaGGCTCCTCGTCATGATTTTTGTCTTTGGCAGGTTTCTTTTTGG +
Preference number: 5 (lower is better)
Translates to: PRLSCSGTCSGGCSQ*APRHDFCLWQVSFW
Trigger: CCAAAAAGAAACCTGCCAAAGACAAAAATCATGACGAGGAGCCCACTGCGAGCATCCACCTGAACAAGTCCCTGAACAAGAGAGTCGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp GGGCTCCAAAGCCAGACCACTAGTTTCAAGCCCAACTCTACCAATTTAGCTGTTGCAGCAAAAGGAGGCTaGCCTTTGGAGGTGATGATC +
Preference number: 5 (lower is better)
Translates to: GLQSQTTSFKPNSTNLAVAAKGG*PLEVMI
Trigger: GATCATCACCTCCAAAGGCAAGCCTCCTTTTGCTGC...AACAGCTAAATTGGTAGAGTTGGGCTTGAAACTAGTGGTCTGGCTTTGGAGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 90 bp TCAGGTGGATGCTCGCAGTGGGCTCCTCGTCATGATTTTTGTCTTTaGCAGGTTTCTTTTTGGGTGGCTTCATACCAATCAGGACAGCTT +
Preference number: 5 (lower is better)
Translates to: SGGCSQWAPRHDFCL*QVSFWVASYQSGQL
Trigger: AAGCTGTCCTGATTGGTATGAAGCCACCCAAAAAGAAACCTGCCAAAGACAAAAATCATGACGAGGAGCCCACTGCGAGCATCCACCTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATCGTTCTCACCTCCACTaGCAGTGGTGCCACTGTGCC +
Preference number: 5 (lower is better)
Translates to: VVTNACKALFHSESTCTYRSHLH*QWCHCA
Trigger: GGCACAGTGGCACCACTGCAAGTGGAGGTGAGAACG...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp TCTAGGCACAAGCCTTCAGGCTACCTACAGCTGGTAGTGCTGGAAATGGCAAATAAAGTCCCAAAAAGCTaGAGCAGGTGTTCCATCACC +
Preference number: 5 (lower is better)
Translates to: SRHKPSGYLQLVVLEMANKVPKS*SRCSIT
Trigger: GGTGATGGAACACCTGCTCAAGCTTTTTGGGACTTT...ATTTGCCATTTCCAGCACTACCAGCTGTAGGTAGCCTGAAGGCTTGTGCCTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp AAATGGACTGACCTCAAGTCCTGCAGCCTTTGTCCATCCAGTGGTTCTCCAGCGTATAGGCTTAGCTACTaGCTGTTGCACAAGAGAACT +
Preference number: 5 (lower is better)
Translates to: KWTDLKSCSLCPSSGSPAYRLSY*LLHKRT
Trigger: AGTTCTCTTGTGCAACAGCAAGTAGCTAAGCCTATA...CGCTGGAGAACCACTGGATGGACAAAGGCTGCAGGACTTGAGGTCAGTCCATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp AGACATGGACATCGTAACAAAGCAATTCACAGGGAGATGATGAGGTTCACGGGGGGCAAATCCAGAACATaGCTGGAGGCATTTGCCAGT +
Preference number: 5 (lower is better)
Translates to: RHGHRNKAIHREMMRFTGGKSRT*LEAFAS
Trigger: ACTGGCAAATGCCTCCAGCAATGTTCTGGATTTGCC...CCCCGTGAACCTCATCATCTCCCTGTGAATTGCTTTGTTACGATGTCCATGTCT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp GGGATAGTGTGGATCCTGTTCTTGGCTACATCTCCTCCTGCTCTGGGTGCCTGCAATATCTCAACACCATaGAGTGAGTGTGATGATAGA +
Preference number: 5 (lower is better)
Translates to: GIVWILFLATSPPALGACNISTP*SECDDR
Trigger: TCTATCATCACACTCACTCAATGGTGTTGAGATATT...GCAGGCACCCAGAGCAGGAGGAGATGTAGCCAAGAACAGGATCCACACTATCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS TCA 90 bp GGTGGCTTCATACCAATCAGGACAGCTTTCATGTTCTCTTTGCCCTaGGATTCTGTGATCATGAACTCATGGGCTTTGATGGCTGCTTCC +
Preference number: 5 (lower is better)
Translates to: GGFIPIRTAFMFSLP*DSVIMNSWALMAAS
Trigger: GGAAGCAGCCATCAAAGCCCATGAGTTCATGATCACAGAATCTCAGGGCAAAGAGAACATGAAAGCTGTCCTGATTGGTATGAAGCCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp CCATCACACTCACACACATCAGCCATCATCAAAATAGTGGCCATGCTGGGAAGACTCACATATCCCAGCTaGTTCCTCCTCACGTGTTTT +
Preference number: 5 (lower is better)
Translates to: PSHSHTSAIIKIVAMLGRLTYPS*FLLTCF
Trigger: AAAACACGTGAGGAGGAACAAGCTGGGATATGTGAG...TCTTCCCAGCATGGCCACTATTTTGATGATGGCTGATGTGTGTGAGTGTGATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp CACACATCAGCCATCATCAAAATAGTGGCCATGCTGGGAAGAACAGGAGTCCTGCTTAGCTACTTGCTGTaGCACAAGAGAACTTTCCTG +
Preference number: 5 (lower is better)
Translates to: HTSAIIKIVAMLGRTGVLLSYLL*HKRTFL
Trigger: CAGGAAAGTTCTCTTGTGCAACAGCAAGTAGCTAAG...CAGGACTCCTGTTCTTCCCAGCATGGCCACTATTTTGATGATGGCTGATGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp CCATCACACTCACACACATCAGCCATCATCAAAATAGTGGCCATGCTGGGAAGACATTGCTGGAGGCATTaGCCAGTTAACACGAACTCT +
Preference number: 5 (lower is better)
Translates to: PSHSHTSAIIKIVAMLGRHCWRH*PVNTNS
Trigger: AGAGTTCGTGTTAACTGGCAAATGCCTCCAGCAATG...TCTTCCCAGCATGGCCACTATTTTGATGATGGCTGATGTGTGTGAGTGTGATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp TCATGCCAGGTGTTTGTCAGAACCTTGAAAACGAAGGTGGTTTTCAGTGGAGCTAAAGGAGGCTTGCCTTaGGAGGTGATGATCAGACAG +
Preference number: 5 (lower is better)
Translates to: SCQVFVRTLKTKVVFSGAKGGLP*EVMIRQ
Trigger: CTGTCTGATCATCACCTCCAAAGGCAAGCCTCCTTT...AGCTCCACTGAAAACCACCTTCGTTTTCAAGGTTCTGACAAACACCTGGCATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 90 bp GGGCTCCTCGTCATGATTTTTGTCTTTGGCAGGTTTCTTTTTGGGTaGCTTCATACCAATCAGGACAGCTTTCATGTTCTCTTTGCCCTG +
Preference number: 5 (lower is better)
Translates to: GLLVMIFVFGRFLFG*LHTNQDSFHVLFAL
Trigger: CAGGGCAAAGAGAACATGAAAGCTGTCCTGATTGGTATGAAGCCACCCAAAAAGAAACCTGCCAAAGACAAAAATCATGACGAGGAGCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp TCAGGGTTCTTTTATAATGTCACACAGGGCAATACGACCAAAGGAAGGCCAAGTTGCACGGGGAGGCATTaGGACTCAGAAAGAGATTCT +
Preference number: 5 (lower is better)
Translates to: SGFFYNVTQGNTTKGRPSCTGRH*DSERDS
Trigger: AGAATCTCTTTCTGAGTCCAAATGCCTCCCCGTGCA...ACTTGGCCTTCCTTTGGTCGTATTGCCCTGTGTGACATTATAAAAGAACCCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp CAAAGTCAGCACTCCCAGTTGGGTGTTTTATTATTTATTTACTTGACAGGTAACGGCTGCTCCAAGGACTaGTGCACGGGGAGGCATTTG +
Preference number: 5 (lower is better)
Translates to: QSQHSQLGVLLFIYLTGNGCSKD*CTGRHL
Trigger: CAAATGCCTCCCCGTGCACAAGTCCTTGGAGCAGCC...GTTACCTGTCAAGTAAATAAATAATAAAACACCCAACTGGGAGTGCTGACTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp CACACATCAGCCATCATCAAAATAGTGGCCATGCTGGGAAGAACAGGAGTCCTGGTGTTTGTCAGAACCTaGAAAACGAAGGTGGTTTTC +
Preference number: 5 (lower is better)
Translates to: HTSAIIKIVAMLGRTGVLVFVRT*KTKVVF
Trigger: GAAAACCACCTTCGTTTTCAAGGTTCTGACAAACAC...CAGGACTCCTGTTCTTCCCAGCATGGCCACTATTTTGATGATGGCTGATGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 90 bp CAGTGGGCTCCTCGTCATGATTTTTGTCTTTGGCAGGTTTCTTTTTaGGTGGCTTCATACCAATCAGGACAGCTTTCATGTTCTCTTTGC +
Preference number: 5 (lower is better)
Translates to: QWAPRHDFCLWQVSF*VASYQSGQLSCSLC
Trigger: GCAAAGAGAACATGAAAGCTGTCCTGATTGGTATGAAGCCACCCAAAAAGAAACCTGCCAAAGACAAAAATCATGACGAGGAGCCCACTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATAGCTCCTCGACTCTCTaGTTCAGGGACTTGTTCAGG +
Preference number: 5 (lower is better)
Translates to: VVTNACKALFHSESTCTYSSSTL*FRDLFR
Trigger: CCTGAACAAGTCCCTGAACAAGAGAGTCGAGGAGCT...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp AGACATGGACATCGTAACAAAGCAATTCACAGGGAGATGATGAGGTTCACGGGGAATCACCTGCAGCGTTaGTTAAAACCCAAATTCCAG +
Preference number: 5 (lower is better)
Translates to: RHGHRNKAIHREMMRFTGNHLQR*LKPKFQ
Trigger: CTGGAATTTGGGTTTTAACAAACGCTGCAGGTGATT...CCCCGTGAACCTCATCATCTCCCTGTGAATTGCTTTGTTACGATGTCCATGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp CTTTTGTCAGGCACAATCTATAACCTCAAAGTCAGCACTCCCAGTTGGGTGTTTACAGGTAACATCGATTaGGTCCTACAAGACACCATG +
Preference number: 5 (lower is better)
Translates to: LLSGTIYNLKVSTPSWVFTGNID*VLQDTM
Trigger: CATGGTGTCTTGTAGGACCAAATCGATGTTACCTGT...AAACACCCAACTGGGAGTGCTGACTTTGAGGTTATAGATTGTGCCTGACAAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp GTTGGCCTGAGAATCTGGATTTCTAATAAGTTCCCAGGTGAGATCAATGCTGTGGACAGGCACAGACTTTaGTCAGGCACAATCTATAAC +
Preference number: 5 (lower is better)
Translates to: VGLRIWISNKFPGEINAVDRHRL*SGTIYN
Trigger: GTTATAGATTGTGCCTGACAAAAGTCTGTGCCTGTC...CACAGCATTGATCTCACCTGGGAACTTATTAGAAATCCAGATTCTCAGGCCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp TGCCTTCAAGGATCTCACTGTCTAGGGAAGGGGAAACACAAATATCTCAACACCATGATAGAATCACAATaGTGGAAGGTGCTAGGCATA +
Preference number: 5 (lower is better)
Translates to: CLQGSHCLGKGKHKYLNTMIESQ*WKVLGI
Trigger: TATGCCTAGCACCTTCCACAATTGTGATTCTATCAT...GGTGTTGAGATATTTGTGTTTCCCCTTCCCTAGACAGTGAGATCCTTGAAGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS-3UTR CAA 90 bp CTTTTGTCAGGCACAATCTATAACCTCAAAGTCAGCACTCCCAGTTGGGTGTTTAGATGTTTCACCTTTTaGAAGGATGTGAGTAGCTTA +
Preference number: 5 (lower is better)
Translates to: LLSGTIYNLKVSTPSWVFRCFTF*KDVSSL
Trigger: TAAGCTACTCACATCCTTCAAAAAGGTGAAACATCT...AAACACCCAACTGGGAGTGCTGACTTTGAGGTTATAGATTGTGCCTGACAAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp CAAGGATCTCACTGTCTAGGGAAGGGGAAACACAAATATCTCAACACCATTGAGAATATCTCAACACCATaGAGTGAGTGTGATGATAGA +
Preference number: 5 (lower is better)
Translates to: QGSHCLGKGKHKYLNTIENISTP*SECDDR
Trigger: TCTATCATCACACTCACTCAATGGTGTTGAGATATT...CTCAATGGTGTTGAGATATTTGTGTTTCCCCTTCCCTAGACAGTGAGATCCTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000344870.4
ENST00000559140.2
CDS-3UTR CAA 90 bp GTAGTGACTAATGCCTGCAAAGCACTTTTCCATTCAGAAAGCACTTGCACATATCCATTCAGAAAGCACTaGCACATATATGACCTTATT +
Preference number: 5 (lower is better)
Translates to: VVTNACKALFHSESTCTYPFRKH*HIYDLI
Trigger: AATAAGGTCATATATGTGCAAGTGCTTTCTGAATGG...ATATGTGCAAGTGCTTTCTGAATGGAAAAGTGCTTTGCAGGCATTAGTCACTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS-3UTR CAA 90 bp CAAAGTCAGCACTCCCAGTTGGGTGTTTTATTATTTATTTACTTGACAGGTAACTTAAGGAACATCTTCTaGTTATCCACTGGTTTGTGG +
Preference number: 5 (lower is better)
Translates to: QSQHSQLGVLLFIYLTGNLRNIF*LSTGLW
Trigger: CCACAAACCAGTGGATAACAAGAAGATGTTCCTTAA...GTTACCTGTCAAGTAAATAAATAATAAAACACCCAACTGGGAGTGCTGACTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS GCA 72 bp AGCCTCCCCGCCGGACTGGGCCATGGCTCGCGGGACTaGGGCGCCGCCGGGGTCCTCACGCCGCAAGGCCCA +
Preference number: 6 (lower is better)
Translates to: SLPAGLGHGSRD*GAAGVLTPQGP
Trigger: TGGGCCTTGCGGCGTGAGGACCCCGGCGGCGCCGCAGTCCCGCGAGCCATGGCCCAGTCCGGCGGGGAGGCT
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CAA 72 bp GCCTCCTGGATGGCGACGCGGATCTGCACCGCCGTCTaGGGCCCGGGCCGAGCCTCCCCGCCGGACTGGGCC +
Preference number: 6 (lower is better)
Translates to: ASWMATRICTAV*GPGRASPPDWA
Trigger: GGCCCAGTCCGGCGGGGAGGCTCGGCCCGGGCCCAAGACGGCGGTGCAGATCCGCGTCGCCATCCAGGAGGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000299213.10
ENST00000344870.4
CDS CAA 90 bp ACGTCCTCGGCCTCCTGGATGGCGACGCGGATCTGCACCGCCGTCTaGGGCCCGGGCCGAGCCTCCCCGCCGGACTGGGCCATGGCTCGC +
Preference number: 6 (lower is better)
Translates to: TSSASWMATRICTAV*GPGRASPPDWAMAR
Trigger: GCGAGCCATGGCCCAGTCCGGCGGGGAGGCTCGGCCCGGGCCCAAGACGGCGGTGCAGATCCGCGTCGCCATCCAGGAGGCCGAGGACGT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000299213.10
ENST00000344870.4
CDS CCA 72 bp CCTCCTGGATGGCGACGCGGATCTGCACCGCCGTCTTaGGCCCGGGCCGAGCCTCCCCGCCGGACTGGGCCA +
Preference number: 6 (lower is better)
Translates to: PPGWRRGSAPPS*ARAEPPRRTGP
Trigger: TGGCCCAGTCCGGCGGGGAGGCTCGGCCCGGGCCCAAGACGGCGGTGCAGATCCGCGTCGCCATCCAGGAGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000299213.10
ENST00000344870.4
CDS GCA 72 bp TCCACGTCCTCGGCCTCCTGGATGGCGACGCGGATCTaGACCGCCGTCTTGGGCCCGGGCCGAGCCTCCCCG +
Preference number: 6 (lower is better)
Translates to: STSSASWMATRI*TAVLGPGRASP
Trigger: CGGGGAGGCTCGGCCCGGGCCCAAGACGGCGGTGCAGATCCGCGTCGCCATCCAGGAGGCCGAGGACGTGGA
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000299213.10
ENST00000344870.4
CDS CCA 72 bp CGTCCTCCAACTCGTCCACGTCCTCGGCCTCCTGGATaGCGACGCGGATCTGCACCGCCGTCTTGGGCCCGG +
Preference number: 6 (lower is better)
Translates to: RPPTRPRPRPPG*RRGSAPPSWAR
Trigger: CCGGGCCCAAGACGGCGGTGCAGATCCGCGTCGCCATCCAGGAGGCCGAGGACGTGGACGAGTTGGAGGACG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000299213.10
ENST00000344870.4
CDS GCA 72 bp TGGTGGCCAGACGGGCTGAGCTTGTTGGTGGCCGCGTaGCGTCGGCCCGCCATAGGGGATGTGGGGTTGCTC +
Preference number: 6 (lower is better)
Translates to: WWPDGLSLLVAA*RRPAIGDVGLL
Trigger: GAGCAACCCCACATCCCCTATGGCGGGCCGACGGCACGCGGCCACCAACAAGCTCAGCCCGTCTGGCCACCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS GCA 72 bp CTGCTCCAGGTCCTCACGCTCGTTCTCACCTCCACTTaGAGTGGTGCCACTGTGCCCGCGGCTCGGCTCCTC +
Preference number: 6 (lower is better)
Translates to: LLQVLTLVLTST*SGATVPAARLL
Trigger: GAGGAGCCGAGCCGCGGGCACAGTGGCACCACTGCAAGTGGAGGTGAGAACGAGCGTGAGGACCTGGAGCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CAA 72 bp CCTGCTCCAGGTCCTCACGCTCGTTCTCACCTCCACTaGCAGTGGTGCCACTGTGCCCGCGGCTCGGCTCCT +
Preference number: 6 (lower is better)
Translates to: PAPGPHARSHLH*QWCHCARGSAP
Trigger: AGGAGCCGAGCCGCGGGCACAGTGGCACCACTGCAAGTGGAGGTGAGAACGAGCGTGAGGACCTGGAGCAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CAA 72 bp CTCAGAAAGAGATTCTGGTGGCCAGACGGGCTGAGCTaGTTGGTGGCCGCGTGCCGTCGGCCCGCCATAGGG +
Preference number: 6 (lower is better)
Translates to: LRKRFWWPDGLS*LVAACRRPAIG
Trigger: CCCTATGGCGGGCCGACGGCACGCGGCCACCAACAAGCTCAGCCCGTCTGGCCACCAGAATCTCTTTCTGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CAA 90 bp TTCCACCTCCTCGAACTCCACGATGGCGCACTCCTGGGTCCCCACTaGGCTGTAGCGGCTGCTGATCCTCCGGATGTCAGGGGGCAGCTC +
Preference number: 6 (lower is better)
Translates to: FHLLELHDGALLGPH*AVAAADPPDVRGQL
Trigger: GAGCTGCCCCCTGACATCCGGAGGATCAGCAGCCGCTACAGCCAAGTGGGGACCCAGGAGTGCGCCATCGTGGAGTTCGAGGAGGTGGAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS TCA 72 bp TTGGACTCAGAAAGAGATTCTGGTGGCCAGACGGGCTaGGCTTGTTGGTGGCCGCGTGCCGTCGGCCCGCCA +
Preference number: 6 (lower is better)
Translates to: LDSERDSGGQTG*ACWWPRAVGPP
Trigger: TGGCGGGCCGACGGCACGCGGCCACCAACAAGCTCAGCCCGTCTGGCCACCAGAATCTCTTTCTGAGTCCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS GCA 72 bp AACCTCAGCACCCCTACGGGTAGCCCATCTGCAGTCTaGATCTTCCGGGAGAGCAGGGGACTCGTACCGGGG +
Preference number: 6 (lower is better)
Translates to: NLSTPTGSPSAV*IFRESRGLVPG
Trigger: CCCCGGTACGAGTCCCCTGCTCTCCCGGAAGATGCAGACTGCAGATGGGCTACCCGTAGGGGTGCTGAGGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CAA 72 bp AGAAAGAGATTCTGGTGGCCAGACGGGCTGAGCTTGTaGGTGGCCGCGTGCCGTCGGCCCGCCATAGGGGAT +
Preference number: 6 (lower is better)
Translates to: RKRFWWPDGLSL*VAACRRPAIGD
Trigger: ATCCCCTATGGCGGGCCGACGGCACGCGGCCACCAACAAGCTCAGCCCGTCTGGCCACCAGAATCTCTTTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CAA 90 bp GCATTTGGACTCAGAAAGAGATTCTGGTGGCCAGACGGGCTGAGCTaGTTGGTGGCCGCGTGCCGTCGGCCCGCCATAGGGGATGTGGGG +
Preference number: 6 (lower is better)
Translates to: AFGLRKRFWWPDGLS*LVAACRRPAIGDVG
Trigger: CCCCACATCCCCTATGGCGGGCCGACGGCACGCGGCCACCAACAAGCTCAGCCCGTCTGGCCACCAGAATCTCTTTCTGAGTCCAAATGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CAA 90 bp TTTGGACTCAGAAAGAGATTCTGGTGGCCAGACGGGCTGAGCTTGTaGGTGGCCGCGTGCCGTCGGCCCGCCATAGGGGATGTGGGGTTG +
Preference number: 6 (lower is better)
Translates to: FGLRKRFWWPDGLSL*VAACRRPAIGDVGL
Trigger: CAACCCCACATCCCCTATGGCGGGCCGACGGCACGCGGCCACCAACAAGCTCAGCCCGTCTGGCCACCAGAATCTCTTTCTGAGTCCAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS TCA 72 bp GTGTCCGCTGTACCTGGCCTGCTACCACCTAAAGACTaGGCGCAGCCAGCAGGACTGGGAAAGGCAGGGCGA +
Preference number: 6 (lower is better)
Translates to: VSAVPGLLPPKD*AQPAGLGKAGR
Trigger: TCGCCCTGCCTTTCCCAGTCCTGCTGGCTGCGCTCAGTCTTTAGGTGGTAGCAGGCCAGGTACAGCGGACAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000559316.2
ENST00000560052.1
CDS CCA 72 bp TCCGCCAGTGGGGACTTTCTGGAAACGCCTTTGCGTTaGGCCAAGGGGCTGCTCCAAGGACTTGTGCACGGG +
Preference number: 6 (lower is better)
Translates to: SASGDFLETPLR*AKGLLQGLVHG
Trigger: CCCGTGCACAAGTCCTTGGAGCAGCCCCTTGGCCCAACGCAAAGGCGTTTCCAGAAAGTCCCCACTGGCGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CAA 72 bp CTCCGCCAGTGGGGACTTTCTGGAAACGCCTTTGCGTaGGGCCAAGGGGCTGCTCCAAGGACTTGTGCACGG +
Preference number: 6 (lower is better)
Translates to: LRQWGLSGNAFA*GQGAAPRTCAR
Trigger: CCGTGCACAAGTCCTTGGAGCAGCCCCTTGGCCCAACGCAAAGGCGTTTCCAGAAAGTCCCCACTGGCGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS GCA 72 bp CTTCCTCCGCCAGTGGGGACTTTCTGGAAACGCCTTTaGGTTGGGCCAAGGGGCTGCTCCAAGGACTTGTGC +
Preference number: 6 (lower is better)
Translates to: LPPPVGTFWKRL*VGPRGCSKDLC
Trigger: GCACAAGTCCTTGGAGCAGCCCCTTGGCCCAACGCAAAGGCGTTTCCAGAAAGTCCCCACTGGCGGAGGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 72 bp CATAGACCAGGAGCATCTTGCTGGGGAGGTTCTCGTTaGGGAACAGTGGGACGGGGGTGGTCCTCCTCACCT +
Preference number: 6 (lower is better)
Translates to: HRPGASCWGGSR*GTVGRGWSSSP
Trigger: AGGTGAGGAGGACCACCCCCGTCCCACTGTTCCCCAACGAGAACCTCCCCAGCAAGATGCTCCTGGTCTATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000299213.10
ENST00000559316.2
CDS CCA 72 bp GTGCACGGGGAGGCATTTGGACTCAGAAAGAGATTCTaGTGGCCAGACGGGCTGAGCTTGTTGGTGGCCGCG +
Preference number: 6 (lower is better)
Translates to: VHGEAFGLRKRF*WPDGLSLLVAA
Trigger: CGCGGCCACCAACAAGCTCAGCCCGTCTGGCCACCAGAATCTCTTTCTGAGTCCAAATGCCTCCCCGTGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 72 bp CACAGGCCCTGCTCCTCTCATGGCCATGAAATCCTCTaGTGTTGTCAGGACCCCTGGGCAACCTCAGCACCC +
Preference number: 6 (lower is better)
Translates to: HRPCSSHGHEIL*CCQDPWATSAP
Trigger: GGGTGCTGAGGTTGCCCAGGGGTCCTGACAACACCAGAGGATTTCATGGCCATGAGAGGAGCAGGGCCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CAA 72 bp CCTTCCTCCGCCAGTGGGGACTTTCTGGAAACGCCTTaGCGTTGGGCCAAGGGGCTGCTCCAAGGACTTGTG +
Preference number: 6 (lower is better)
Translates to: PSSASGDFLETP*RWAKGLLQGLV
Trigger: CACAAGTCCTTGGAGCAGCCCCTTGGCCCAACGCAAAGGCGTTTCCAGAAAGTCCCCACTGGCGGAGGAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 72 bp GGGGCTGCTCCAAGGACTTGTGCACGGGGAGGCATTTaGACTCAGAAAGAGATTCTGGTGGCCAGACGGGCT +
Preference number: 6 (lower is better)
Translates to: GAAPRTCARGGI*TQKEILVARRA
Trigger: AGCCCGTCTGGCCACCAGAATCTCTTTCTGAGTCCAAATGCCTCCCCGTGCACAAGTCCTTGGAGCAGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 72 bp CATGGCCATGAAATCCTCTGGTGTTGTCAGGACCCCTaGGCAACCTCAGCACCCCTACGGGTAGCCCATCTG +
Preference number: 6 (lower is better)
Translates to: HGHEILWCCQDP*ATSAPLRVAHL
Trigger: CAGATGGGCTACCCGTAGGGGTGCTGAGGTTGCCCAGGGGTCCTGACAACACCAGAGGATTTCATGGCCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CAA 72 bp AGGGGCTGCTCCAAGGACTTGTGCACGGGGAGGCATTaGGACTCAGAAAGAGATTCTGGTGGCCAGACGGGC +
Preference number: 6 (lower is better)
Translates to: RGCSKDLCTGRH*DSERDSGGQTG
Trigger: GCCCGTCTGGCCACCAGAATCTCTTTCTGAGTCCAAATGCCTCCCCGTGCACAAGTCCTTGGAGCAGCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS TCA 72 bp ACTCTATGCCAGTGGGCAGCAGGAAGGGCTTCAGACTaGACACTTGCTGAGACTCAAGCCACGGGAGCTGGG +
Preference number: 6 (lower is better)
Translates to: TLCQWAAGRASD*TLAETQATGAG
Trigger: CCCAGCTCCCGTGGCTTGAGTCTCAGCAAGTGTTCAGTCTGAAGCCCTTCCTGCTGCCCACTGGCATAGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS GCA 72 bp ACTTTCTGGAAACGCCTTTGCGTTGGGCCAAGGGGCTaGTCCAAGGACTTGTGCACGGGGAGGCATTTGGAC +
Preference number: 6 (lower is better)
Translates to: TFWKRLCVGPRG*SKDLCTGRHLD
Trigger: GTCCAAATGCCTCCCCGTGCACAAGTCCTTGGAGCAGCCCCTTGGCCCAACGCAAAGGCGTTTCCAGAAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS GCA 72 bp GATAGTGTGGATCCTGTTCTTGGCTACATCTCCTCCTaGTCTGGGTGCCTGCCCACTGGGCTCTGTCAGCTC +
Preference number: 6 (lower is better)
Translates to: DSVDPVLGYISS*SGCLPTGLCQL
Trigger: GAGCTGACAGAGCCCAGTGGGCAGGCACCCAGAGCAGGAGGAGATGTAGCCAAGAACAGGATCCACACTATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS CCA 72 bp GCTCTGTCAGCTCACCGAAGAACCCCAGGGATTTTCTaGGGTCAACTCTATGCCAGTGGGCAGCAGGAAGGG +
Preference number: 6 (lower is better)
Translates to: ALSAHRRTPGIF*GQLYASGQQEG
Trigger: CCCTTCCTGCTGCCCACTGGCATAGAGTTGACCCCAGAAAATCCCTGGGGTTCTTCGGTGAGCTGACAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000559140.2
CDS CAA 72 bp CGCCTTTGCGTTGGGCCAAGGGGCTGCTCCAAGGACTaGTGCACGGGGAGGCATTTGGACTCAGAAAGAGAT +
Preference number: 6 (lower is better)
Translates to: RLCVGPRGCSKD*CTGRHLDSERD
Trigger: ATCTCTTTCTGAGTCCAAATGCCTCCCCGTGCACAAGTCCTTGGAGCAGCCCCTTGGCCCAACGCAAAGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CAA 72 bp CCTGCTCCAGGTCCTCACGCTCGTTCTCACCTCCACTaGCAGTGGTGCCACTTGAAATCCCACCTCCTGGAA +
Preference number: 6 (lower is better)
Translates to: PAPGPHARSHLH*QWCHLKSHLLE
Trigger: TTCCAGGAGGTGGGATTTCAAGTGGCACCACTGCAAGTGGAGGTGAGAACGAGCGTGAGGACCTGGAGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000559316.2
CDS CAA 90 bp TTCTGGAAACGCCTTTGCGTTGGGCCAAGGGGCTGCTCCAAGGACTaGTGCACGGGGAGGCATTTGGACTCAGAAAGAGATTCTGGTGGC +
Preference number: 6 (lower is better)
Translates to: FWKRLCVGPRGCSKD*CTGRHLDSERDSGG
Trigger: GCCACCAGAATCTCTTTCTGAGTCCAAATGCCTCCCCGTGCACAAGTCCTTGGAGCAGCCCCTTGGCCCAACGCAAAGGCGTTTCCAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS GCA 72 bp TTCTTGATCAACTCCTCATCCGGGGGCTTCCACTCCTaGTCCAGGTCCTCACGCTCGTTCTCACCTCCACTT +
Preference number: 6 (lower is better)
Translates to: FLINSSSGGFHS*SRSSRSFSPPL
Trigger: AAGTGGAGGTGAGAACGAGCGTGAGGACCTGGAGCAGGAGTGGAAGCCCCCGGATGAGGAGTTGATCAAGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000299213.10
ENST00000559316.2
CDS CCA 72 bp GAGACAAGTAGAGATCATAGACCAGGAGCATCTTGCTaGGGAGGTTCTCGTTGGGGAACAGTGGGACGGGGG +
Preference number: 6 (lower is better)
Translates to: ETSRDHRPGASC*GGSRWGTVGRG
Trigger: CCCCCGTCCCACTGTTCCCCAACGAGAACCTCCCCAGCAAGATGCTCCTGGTCTATGATCTCTACTTGTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000299213.10
ENST00000559316.2
CDS CCA 72 bp GGGATGTGGGGTTGCTCTCGGGGTCAGAGGAGCTGTTaGCAGAAGACTCATCACCCATGTACTGAAGCTCCT +
Preference number: 6 (lower is better)
Translates to: GMWGCSRGQRSC*QKTHHPCTEAP
Trigger: AGGAGCTTCAGTACATGGGTGATGAGTCTTCTGCCAACAGCTCCTCTGACCCCGAGAGCAACCCCACATCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS GCA 72 bp CTTTGCGTTGGGCCAAGGGGCTGCTCCAAGGACTTGTaGACGGGGAGGCATTTGGACTCAGAAAGAGATTCT +
Preference number: 6 (lower is better)
Translates to: LCVGPRGCSKDL*TGRHLDSERDS
Trigger: AGAATCTCTTTCTGAGTCCAAATGCCTCCCCGTGCACAAGTCCTTGGAGCAGCCCCTTGGCCCAACGCAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS TCA 72 bp GGTATTTATACACAGGCCCTGCTCCTCTCATGGCCATaGAATCCTCTGGTGTTGTCAGGACCCCTGGGCAAC +
Preference number: 6 (lower is better)
Translates to: GIYTQALLLSWP*NPLVLSGPLGN
Trigger: GTTGCCCAGGGGTCCTGACAACACCAGAGGATTTCATGGCCATGAGAGGAGCAGGGCCTGTGTATAAATACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS GCA 72 bp AGATTCTGTGATCATGAACTCATGGGCTTTGATGGCTaGTTCCACCTCCTCGAACTCCACGATGGCGCACTC +
Preference number: 6 (lower is better)
Translates to: RFCDHELMGFDG*FHLLELHDGAL
Trigger: GAGTGCGCCATCGTGGAGTTCGAGGAGGTGGAAGCAGCCATCAAAGCCCATGAGTTCATGATCACAGAATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CCA 72 bp AGGAATAATCCATACACTTGCGGAAGATCTCAGGGCTaGTGCTGCAGTTCAGTCTACCTTCCTCCGCCAGTG +
Preference number: 6 (lower is better)
Translates to: RNNPYTCGRSQG*CCSSVYLPPPV
Trigger: CACTGGCGGAGGAAGGTAGACTGAACTGCAGCACCAGCCCTGAGATCTTCCGCAAGTGTATGGATTATTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS TCA 72 bp GAGGAGCTGTTGGCAGAAGACTCATCACCCATGTACTaGAGCTCCTCGACTCTCTTGTTCAGGGACTTGTTC +
Preference number: 6 (lower is better)
Translates to: EELLAEDSSPMY*SSSTLLFRDLF
Trigger: GAACAAGTCCCTGAACAAGAGAGTCGAGGAGCTTCAGTACATGGGTGATGAGTCTTCTGCCAACAGCTCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CAA 72 bp CAAGCATGGTCCTTGAATTCACCGAGCTCCTATTCCTaGAAATCCCACCTCCTGGAATCCCCCATCAGCAAG +
Preference number: 6 (lower is better)
Translates to: QAWSLNSPSSYS*KSHLLESPISK
Trigger: CTTGCTGATGGGGGATTCCAGGAGGTGGGATTTCAAGGAATAGGAGCTCGGTGAATTCAAGGACCATGCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000560052.1
CDS CCA 72 bp TCTTGTTCAGGGACTTGTTCAGGTGGATGCTCGCAGTaGGCTCCTCGTCATGATTTTTGTCTTTGGCAGGTT +
Preference number: 6 (lower is better)
Translates to: SCSGTCSGGCSQ*APRHDFCLWQV
Trigger: AACCTGCCAAAGACAAAAATCATGACGAGGAGCCCACTGCGAGCATCCACCTGAACAAGTCCCTGAACAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS TCA 72 bp CAGAAAAGTAGAATTCGATCTGATCCACCAGTTTCTTaGTCAACTCCTCATCCGGGGGCTTCCACTCCTGCT +
Preference number: 6 (lower is better)
Translates to: QKSRIRSDPPVS*STPHPGASTPA
Trigger: AGCAGGAGTGGAAGCCCCCGGATGAGGAGTTGATCAAGAAACTGGTGGATCAGATCGAATTCTACTTTTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000299213.10
ENST00000559316.2
CDS CAA 72 bp CGCACTGATGAGATGACTCCAAAAGTCCCAAAAAGCTaGAGCAGGTGTTCCATCACCTTCTCTTGCACCCTT +
Preference number: 6 (lower is better)
Translates to: RTDEMTPKVPKS*SRCSITFSCTL
Trigger: AAGGGTGCAAGAGAAGGTGATGGAACACCTGCTCAAGCTTTTTGGGACTTTTGGAGTCATCTCATCAGTGCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CAA 90 bp TTGAGGATCCGCACTGATGAGATGACTCCAAAAGTCCCAAAAAGCTaGAGCAGGTGTTCCATCACCTTCTCTTGCACCCTTCCATTCTTC +
Preference number: 6 (lower is better)
Translates to: LRIRTDEMTPKVPKS*SRCSITFSCTLPFF
Trigger: GAAGAATGGAAGGGTGCAAGAGAAGGTGATGGAACACCTGCTCAAGCTTTTTGGGACTTTTGGAGTCATCTCATCAGTGCGGATCCTCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000299213.10
CDS CAA 72 bp AAGGATGTGAGTAGCTTAACGCTCACATATCCCAGCTaGTTCCTCCTCACGTGTTTTAGCAAAAAGGCGTCC +
Preference number: 6 (lower is better)
Translates to: KDVSSLTLTYPS*FLLTCFSKKAS
Trigger: GGACGCCTTTTTGCTAAAACACGTGAGGAGGAACAAGCTGGGATATGTGAGCGTTAAGCTACTCACATCCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000299213.10
ENST00000559316.2
CDS TCA 72 bp ATACCAATCAGGACAGCTTTCATGTTCTCTTTGCCCTaGGATTCTGTGATCATGAACTCATGGGCTTTGATG +
Preference number: 6 (lower is better)
Translates to: IPIRTAFMFSLP*DSVIMNSWALM
Trigger: CATCAAAGCCCATGAGTTCATGATCACAGAATCTCAGGGCAAAGAGAACATGAAAGCTGTCCTGATTGGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299213.10