Pregenerated sensors for LARGE-IT1 (Homo sapiens)
Ensembl gene IDs: ENSG00000232081Ensembl transcript IDs: ENST00000445391.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GAAACACAGGGAACGAGAGGCTGCGTGGCTGACAGTGTGCCGGGGTaGCAGGCGGATACGGCACATGACGCAGAGTGGAAGACAACCACA | + |
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Preference number: 5 (lower is better) Translates to: ETQGTRGCVADSVPG*QADTAHDAEWKTTT Trigger: TGTGGTTGTCTTCCACTCTGCGTCATGTGCCGTATCCGCCTGTCACCCCGGCACACTGTCAGCCACGCAGCCTCTCGTTCCCTGTGTTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445391.1 |
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| CDS GCA 90 bp | TGTGCAAGGAAACACAGGGAACGAGAGGCTGCGTGGCTGACAGTGTaGCGGGGTGACAGGCGGATACGGCACATGACGCAGAGTGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: CARKHREREAAWLTV*RGDRRIRHMTQSGR Trigger: TCTTCCACTCTGCGTCATGTGCCGTATCCGCCTGTCACCCCGGCACACTGTCAGCCACGCAGCCTCTCGTTCCCTGTGTTTCCTTGCACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445391.1 |
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| CDS GCA 90 bp | ACCACAAAGGCAAACTTGGAGCTAGTGCCCACCAAACCAATTCCCTaGTTCAGAAATGGAACGATGCTGAACTGTCAGCTGAAGAAGGCT | + |
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Preference number: 5 (lower is better) Translates to: TTKANLELVPTKPIP*FRNGTMLNCQLKKA Trigger: AGCCTTCTTCAGCTGACAGTTCAGCATCGTTCCATTTCTGAAGCAGGGAATTGGTTTGGTGGGCACTAGCTCCAAGTTTGCCTTTGTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445391.1 |
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| CDS TCA 72 bp | GGAACGAGAGGCTGCGTGGCTGACAGTGTGCCGGGGTaGCAGGCGGATACGGCACATGACGCAGAGTGGAAG | + |
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Preference number: 6 (lower is better) Translates to: GTRGCVADSVPG*QADTAHDAEWK Trigger: CTTCCACTCTGCGTCATGTGCCGTATCCGCCTGTCACCCCGGCACACTGTCAGCCACGCAGCCTCTCGTTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445391.1 |
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| CDS TCA 72 bp | GTGCAAGGAAACACAGGGAACGAGAGGCTGCGTGGCTaGCAGTGTGCCGGGGTGACAGGCGGATACGGCACA | + |
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Preference number: 6 (lower is better) Translates to: VQGNTGNERLRG*QCAGVTGGYGT Trigger: TGTGCCGTATCCGCCTGTCACCCCGGCACACTGTCAGCCACGCAGCCTCTCGTTCCCTGTGTTTCCTTGCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445391.1 |
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| CDS GCA 72 bp | AAACACAGGGAACGAGAGGCTGCGTGGCTGACAGTGTaGCGGGGTGACAGGCGGATACGGCACATGACGCAG | + |
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Preference number: 6 (lower is better) Translates to: KHREREAAWLTV*RGDRRIRHMTQ Trigger: CTGCGTCATGTGCCGTATCCGCCTGTCACCCCGGCACACTGTCAGCCACGCAGCCTCTCGTTCCCTGTGTTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445391.1 |
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| CDS CCA 72 bp | GCTAGTGCCCACCAAACCAATTCCCTGCTTCAGAAATaGAACGATGCTGAACTGTCAGCTGAAGAAGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: ASAHQTNSLLQK*NDAELSAEEGC Trigger: GCAGCCTTCTTCAGCTGACAGTTCAGCATCGTTCCATTTCTGAAGCAGGGAATTGGTTTGGTGGGCACTAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445391.1 |
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| CDS GCA 72 bp | GCAAACTTGGAGCTAGTGCCCACCAAACCAATTCCCTaGTTCAGAAATGGAACGATGCTGAACTGTCAGCTG | + |
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Preference number: 6 (lower is better) Translates to: ANLELVPTKPIP*FRNGTMLNCQL Trigger: CAGCTGACAGTTCAGCATCGTTCCATTTCTGAAGCAGGGAATTGGTTTGGTGGGCACTAGCTCCAAGTTTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445391.1 |
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| CDS CAA 90 bp | ACAGGAAAGAGAATGAAGGAGGCTAGAAATACCACAAAGGCAAACTaGGAGCTAGTGCCCACCAAACCAATTCCCTGCTTCAGAAATGGA | + |
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Preference number: 6 (lower is better) Translates to: TGKRMKEARNTTKAN*ELVPTKPIPCFRNG Trigger: TCCATTTCTGAAGCAGGGAATTGGTTTGGTGGGCACTAGCTCCAAGTTTGCCTTTGTGGTATTTCTAGCCTCCTTCATTCTCTTTCCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445391.1 |
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