Pregenerated sensors for LAPTM4A (Homo sapiens)
Ensembl gene IDs: ENSG00000068697Ensembl transcript IDs: ENST00000175091.5
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GCAGATGAAAAGTTCAGATCTTATACCCAACTACTTACTCACCCCGAATATTTAAAGTTTGAAGAGCCCTaGATTGCAGCATTCTGTAAC | + |
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Preference number: 2 (lower is better) Translates to: ADEKFRSYTQLLTHPEYLKFEEP*IAAFCN Trigger: GTTACAGAATGCTGCAATTCAGGGCTCTTCAAACTT...TAAATATTCGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| 3UTR-3UTR TCA 90 bp | AAGGCAAACAATGGCACTTTGCTCTTGCTTAACCTAGATTGTCTTCAAAAACTATATATCAAACAAGTTTaGAGAGCCCTGAATTGCAGC | + |
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Preference number: 2 (lower is better) Translates to: KANNGTLLLLNLDCLQKLYIKQV*RALNCS Trigger: GCTGCAATTCAGGGCTCTTCAAACTTGTTTGATATA...TAGTTTTTGAAGACAATCTAGGTTAAGCAAGAGCAAAGTGCCATTGTTTGCCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| 3UTR-3UTR CAA 90 bp | CACAGTCAAGTCACAATGTCAAATATTTTTCTTGCCTCTGCAGATGAAAAGTTCAATGGCACTTTGCTCTaGCTTAACCTAGATTGTCTT | + |
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Preference number: 3 (lower is better) Translates to: HSQVTMSNIFLASADEKFNGTLL*LNLDCL Trigger: AAGACAATCTAGGTTAAGCAAGAGCAAAGTGCCATT...GAACTTTTCATCTGCAGAGGCAAGAAAAATATTTGACATTGTGACTTGACTGTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| 3UTR-3UTR CAA 90 bp | TATATAAAGAAAGTGCAGTTAAAAAGGAAACTATGTGGCAAGTACCCTCTTTCCTTATATCAAACAAGTTaGAAGAGCCCTGAATTGCAG | + |
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Preference number: 3 (lower is better) Translates to: YIKKVQLKRKLCGKYPLSLYQTS*KSPELQ Trigger: CTGCAATTCAGGGCTCTTCAAACTTGTTTGATATAA...GGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCTTTATATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR TCA 90 bp | GCCTCTGCAGATGAAAAGTTCAGATCTTATACCCAACTACTTACTCACCCCGAATCTTGGCCGGGCCCCTaGCAAACGTTCTCCACCCGC | + |
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Preference number: 4 (lower is better) Translates to: ASADEKFRSYTQLLTHPESWPGP*QTFSTR Trigger: GCGGGTGGAGAACGTTTGTCAGGGGCCCGGCCAAGA...TTCGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR CCA 90 bp | AAGGCAAACAATGGCACTTTGCTCTTGCTTAACCTAGATTGTCTTCAAAAACTAGTCCCGGTGCGGACATaGCAACAGCCGCAGCACCGG | + |
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Preference number: 4 (lower is better) Translates to: KANNGTLLLLNLDCLQKLVPVRT*QQPQHR Trigger: CCGGTGCTGCGGCTGTTGCCATGTCCGCACCGGGAC...TAGTTTTTGAAGACAATCTAGGTTAAGCAAGAGCAAAGTGCCATTGTTTGCCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR TCA 90 bp | AAGGCAAACAATGGCACTTTGCTCTTGCTTAACCTAGATTGTCTTCAAAAACTAACCAGGTCCCCAGGATaGTCGTCCCGGTGCGGACAT | + |
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Preference number: 4 (lower is better) Translates to: KANNGTLLLLNLDCLQKLTRSPG*SSRCGH Trigger: ATGTCCGCACCGGGACGATCATCCTGGGGACCTGGT...TAGTTTTTGAAGACAATCTAGGTTAAGCAAGAGCAAAGTGCCATTGTTTGCCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR GCA 90 bp | ATAAAGAAAGTGCAGTTAAAAAGGAAACTATGTGGCAAGTACCCTCTTTCCCTTAGCCGCAGCACCGGGTaGTGTAGAACCGGTCACTGC | + |
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Preference number: 4 (lower is better) Translates to: IKKVQLKRKLCGKYPLSLSRSTG*CRTGHC Trigger: GCAGTGACCGGTTCTACAGCACCCGGTGCTGCGGCT...AAGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCTTTAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR TCA 90 bp | GCAGATGAAAAGTTCAGATCTTATACCCAACTACTTACTCACCCCGAATATTTACACTGCGGTTCCGCTTaGAACTCATGGACACCATCG | + |
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Preference number: 4 (lower is better) Translates to: ADEKFRSYTQLLTHPEYLHCGSA*NSWTPS Trigger: CGATGGTGTCCATGAGTTTCAAGCGGAACCGCAGTG...TAAATATTCGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR CCA 90 bp | TTGCCTCTGCAGATGAAAAGTTCAGATCTTATACCCAACTACTTACTCACCCCGCTGAATGTTGACAGCTaGCATGGAGTTTGGATGAGT | + |
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Preference number: 4 (lower is better) Translates to: LPLQMKSSDLIPNYLLTPLNVDS*HGVWMS Trigger: ACTCATCCAAACTCCATGCCAGCTGTCAACATTCAG...CGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR TCA 90 bp | ATAAAGAAAGTGCAGTTAAAAAGGAAACTATGTGGCAAGTACCCTCTTTCCCTTGGCATGGAGTTTGGATaGGTCACTTCCACAGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: IKKVQLKRKLCGKYPLSLGMEFG*VTSTVS Trigger: GCTGACTGTGGAAGTGACTCATCCAAACTCCATGCC...AAGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCTTTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR TCA 90 bp | TTTCTTGCCTCTGCAGATGAAAAGTTCAGATCTTATACCCAACTACTTACTCACCCGATGACTTCATACTaGATGTTGACAGCTGGCATG | + |
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Preference number: 4 (lower is better) Translates to: FLASADEKFRSYTQLLTHPMTSY*MLTAGM Trigger: CATGCCAGCTGTCAACATTCAGTATGAAGTCATCGG...GTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR TCA 90 bp | TTGCCTCTGCAGATGAAAAGTTCAGATCTTATACCCAACTACTTACTCACCCCGTATATCAAACAAGTTTaGAGAGCCCTGAATTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LPLQMKSSDLIPNYLLTPYIKQV*RALNCS Trigger: GCTGCAATTCAGGGCTCTTCAAACTTGTTTGATATA...CGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR TCA 90 bp | TTGCCTCTGCAGATGAAAAGTTCAGATCTTATACCCAACTACTTACTCACCCCGTCTTGCCTCTGCAGATaGAAAGTTCAGATCTTATAC | + |
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Preference number: 4 (lower is better) Translates to: LPLQMKSSDLIPNYLLTPSCLCR*KVQILY Trigger: GTATAAGATCTGAACTTTTCATCTGCAGAGGCAAGA...CGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR GCA 90 bp | CACAGTCAAGTCACAATGTCAAATATTTTTCTTGCCTCTGCAGATGAAAAGTTCAACGTACTGAGGAGGTaGTTCAAAGGCAGGGTACAC | + |
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Preference number: 4 (lower is better) Translates to: HSQVTMSNIFLASADEKFNVLRR*FKGRVH Trigger: GTGTACCCTGCCTTTGAAGCACCTCCTCAGTACGTT...GAACTTTTCATCTGCAGAGGCAAGAAAAATATTTGACATTGTGACTTGACTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR CCA 90 bp | TTGCCTCTGCAGATGAAAAGTTCAGATCTTATACCCAACTACTTACTCACCCCGAAAAAGGAAACTATGTaGCAAGTACCCTCTTTCCCT | + |
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Preference number: 4 (lower is better) Translates to: LPLQMKSSDLIPNYLLTPKKETM*QVPSFP Trigger: AGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTT...CGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR TCA 90 bp | ATAAAGAAAGTGCAGTTAAAAAGGAAACTATGTGGCAAGTACCCTCTTTCCCTTAGAACACAAGAACAATaGACAGGAGGCAGCTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: IKKVQLKRKLCGKYPLSLRTQEQ*TGGSWS Trigger: ACTCCAGCTGCCTCCTGTTCATTGTTCTTGTGTTCT...AAGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCTTTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR CCA 90 bp | ATAAAGAAAGTGCAGTTAAAAAGGAAACTATGTGGCAAGTACCCTCTTTCCCTTAGCTGGCATGGAGTTTaGATGAGTCACTTCCACAGT | + |
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Preference number: 4 (lower is better) Translates to: IKKVQLKRKLCGKYPLSLSWHGV*MSHFHS Trigger: ACTGTGGAAGTGACTCATCCAAACTCCATGCCAGCT...AAGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCTTTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR CCA 90 bp | CACAGTCAAGTCACAATGTCAAATATTTTTCTTGCCTCTGCAGATGAAAAGTTCTCGGTAACAGAAGAATaGAATCAGCCAACCCACTTG | + |
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Preference number: 4 (lower is better) Translates to: HSQVTMSNIFLASADEKFSVTEE*NQPTHL Trigger: CAAGTGGGTTGGCTGATTCCATTCTTCTGTTACCGA...GAACTTTTCATCTGCAGAGGCAAGAAAAATATTTGACATTGTGACTTGACTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR TCA 90 bp | ATAAAGAAAGTGCAGTTAAAAAGGAAACTATGTGGCAAGTACCCTCTTTCCCTTGCACGTTTCGGTTGTTaGTGTATTTATAGCAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: IKKVQLKRKLCGKYPLSLARFGC*CIYSSS Trigger: GGAACTGCTATAAATACATCAACAACCGAAACGTGC...AAGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCTTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR GCA 90 bp | TATATAAAGAAAGTGCAGTTAAAAAGGAAACTATGTGGCAAGTACCCTCTTTCCTACAAACTAGAAACATaGAACCATCATCTTCCACAG | + |
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Preference number: 4 (lower is better) Translates to: YIKKVQLKRKLCGKYPLSYKLET*NHHLPQ Trigger: CTGTGGAAGATGATGGTTGCATGTTTCTAGTTTGTA...GGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCTTTATATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS TCA 90 bp | ATGGACACCATCGTAACAGGCGGGCCTCCTTCTTGGCCGGGCCCCTaGCAAACGTTCTCCACCCGCAGCCAAACTCAAACGGCTGTTTCA | + |
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Preference number: 5 (lower is better) Translates to: MDTIVTGGPPSWPGP*QTFSTRSQTQTAVS Trigger: TGAAACAGCCGTTTGAGTTTGGCTGCGGGTGGAGAACGTTTGTCAGGGGCCCGGCCAAGAAGGAGGCCCGCCTGTTACGATGGTGTCCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR CAA 90 bp | TTGCCTCTGCAGATGAAAAGTTCAGATCTTATACCCAACTACTTACTCACCCCGAGGCGGGCCTCCTTCTaGGCCGGGCCCCTGACAAAC | + |
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Preference number: 5 (lower is better) Translates to: LPLQMKSSDLIPNYLLTPRRASF*AGPLTN Trigger: GTTTGTCAGGGGCCCGGCCAAGAAGGAGGCCCGCCT...CGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR CAA 90 bp | TTGCCTCTGCAGATGAAAAGTTCAGATCTTATACCCAACTACTTACTCACCCCGTCACTGCGGTTCCGCTaGAAACTCATGGACACCATC | + |
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Preference number: 5 (lower is better) Translates to: LPLQMKSSDLIPNYLLTPSLRFR*KLMDTI Trigger: GATGGTGTCCATGAGTTTCAAGCGGAACCGCAGTGA...CGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR CAA 90 bp | TTGCCTCTGCAGATGAAAAGTTCAGATCTTATACCCAACTACTTACTCACCCCGCGGCCATTTCATAGGTaGGCAAAACGTACTGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: LPLQMKSSDLIPNYLLTPRPFHR*AKRTEE Trigger: CTCCTCAGTACGTTTTGCCAACCTATGAAATGGCCG...CGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS CCA 90 bp | AACCAGGCAACTGAGGACGAAGTCAAAAAGTCGGTAACAGAAGAATaGAATCAGCCAACCCACTTGATAAGAAATTGCTCCATAAACCAG | + |
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Preference number: 5 (lower is better) Translates to: NQATEDEVKKSVTEE*NQPTHLIRNCSINQ Trigger: CTGGTTTATGGAGCAATTTCTTATCAAGTGGGTTGGCTGATTCCATTCTTCTGTTACCGACTTTTTGACTTCGTCCTCAGTTGCCTGGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR CAA 90 bp | AAGGCAAACAATGGCACTTTGCTCTTGCTTAACCTAGATTGTCTTCAAAAACTACAGCTGGCATGGAGTTaGGATGAGTCACTTCCACAG | + |
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Preference number: 5 (lower is better) Translates to: KANNGTLLLLNLDCLQKLQLAWS*DESLPQ Trigger: CTGTGGAAGTGACTCATCCAAACTCCATGCCAGCTG...TAGTTTTTGAAGACAATCTAGGTTAAGCAAGAGCAAAGTGCCATTGTTTGCCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS CCA 90 bp | AGACGAATAGTAATTACCGATGACTTCATACTGAATGTTGACAGCTaGCATGGAGTTTGGATGAGTCACTTCCACAGTCAGCAAAATTGC | + |
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Preference number: 5 (lower is better) Translates to: RRIVITDDFILNVDS*HGVWMSHFHSQQNC Trigger: GCAATTTTGCTGACTGTGGAAGTGACTCATCCAAACTCCATGCCAGCTGTCAACATTCAGTATGAAGTCATCGGTAATTACTATTCGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR CAA 90 bp | TTGCCTCTGCAGATGAAAAGTTCAGATCTTATACCCAACTACTTACTCACCCCGTTATATCAAACAAGTTaGAAGAGCCCTGAATTGCAG | + |
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Preference number: 5 (lower is better) Translates to: LPLQMKSSDLIPNYLLTPLYQTS*KSPELQ Trigger: CTGCAATTCAGGGCTCTTCAAACTTGTTTGATATAA...CGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR CAA 90 bp | ATAAAGAAAGTGCAGTTAAAAAGGAAACTATGTGGCAAGTACCCTCTTTCCCTTGCAAACAATGGCACTTaGCTCTTGCTTAACCTAGAT | + |
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Preference number: 5 (lower is better) Translates to: IKKVQLKRKLCGKYPLSLANNGT*LLLNLD Trigger: ATCTAGGTTAAGCAAGAGCAAAGTGCCATTGTTTGC...AAGGGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCTTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR CAA 90 bp | GCAGATGAAAAGTTCAGATCTTATACCCAACTACTTACTCACCCCGAATATTTAAATGGCACTTTGCTCTaGCTTAACCTAGATTGTCTT | + |
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Preference number: 5 (lower is better) Translates to: ADEKFRSYTQLLTHPEYLNGTLL*LNLDCL Trigger: AAGACAATCTAGGTTAAGCAAGAGCAAAGTGCCATT...TAAATATTCGGGGTGAGTAAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS-3UTR CAA 90 bp | TATATAAAGAAAGTGCAGTTAAAAAGGAAACTATGTGGCAAGTACCCTCTTTCCCCACAGTCAGCAAAATaGCCATCAATAGGTTTACTA | + |
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Preference number: 5 (lower is better) Translates to: YIKKVQLKRKLCGKYPLSPQSAK*PSIGLL Trigger: TAGTAAACCTATTGATGGCAATTTTGCTGACTGTGG...GGAAAGAGGGTACTTGCCACATAGTTTCCTTTTTAACTGCACTTTCTTTATATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS CAA 72 bp | ACTCATGGACACCATCGTAACAGGCGGGCCTCCTTCTaGGCCGGGCCCCTGACAAACGTTCTCCACCCGCAG | + |
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Preference number: 6 (lower is better) Translates to: THGHHRNRRASF*AGPLTNVLHPQ Trigger: CTGCGGGTGGAGAACGTTTGTCAGGGGCCCGGCCAAGAAGGAGGCCCGCCTGTTACGATGGTGTCCATGAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS TCA 72 bp | ATCGTAACAGGCGGGCCTCCTTCTTGGCCGGGCCCCTaGCAAACGTTCTCCACCCGCAGCCAAACTCAAACG | + |
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Preference number: 6 (lower is better) Translates to: IVTGGPPSWPGP*QTFSTRSQTQT Trigger: CGTTTGAGTTTGGCTGCGGGTGGAGAACGTTTGTCAGGGGCCCGGCCAAGAAGGAGGCCCGCCTGTTACGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS CAA 90 bp | CCGCTTGAAACTCATGGACACCATCGTAACAGGCGGGCCTCCTTCTaGGCCGGGCCCCTGACAAACGTTCTCCACCCGCAGCCAAACTCA | + |
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Preference number: 6 (lower is better) Translates to: PLETHGHHRNRRASF*AGPLTNVLHPQPNS Trigger: TGAGTTTGGCTGCGGGTGGAGAACGTTTGTCAGGGGCCCGGCCAAGAAGGAGGCCCGCCTGTTACGATGGTGTCCATGAGTTTCAAGCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS TCA 72 bp | TCAATAGGTTTACTACCATGTACCAGGTCCCCAGGATaGTCGTCCCGGTGCGGACATGGCAACAGCCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: SIGLLPCTRSPG*SSRCGHGNSRS Trigger: GCTGCGGCTGTTGCCATGTCCGCACCGGGACGATCATCCTGGGGACCTGGTACATGGTAGTAAACCTATTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS CCA 72 bp | GTAATTACCGATGACTTCATACTGAATGTTGACAGCTaGCATGGAGTTTGGATGAGTCACTTCCACAGTCAG | + |
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Preference number: 6 (lower is better) Translates to: VITDDFILNVDS*HGVWMSHFHSQ Trigger: CTGACTGTGGAAGTGACTCATCCAAACTCCATGCCAGCTGTCAACATTCAGTATGAAGTCATCGGTAATTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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| CDS CAA 72 bp | TGGAGTTTGGATGAGTCACTTCCACAGTCAGCAAAATaGCCATCAATAGGTTTACTACCATGTACCAGGTCC | + |
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Preference number: 6 (lower is better) Translates to: WSLDESLPQSAK*PSIGLLPCTRS Trigger: GGACCTGGTACATGGTAGTAAACCTATTGATGGCAATTTTGCTGACTGTGGAAGTGACTCATCCAAACTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000175091.5 |
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