Pregenerated sensors for LACTB2 (Homo sapiens)
Ensembl gene IDs: ENSG00000147592Ensembl transcript IDs: ENST00000276590.5, ENST00000517601.1, ENST00000522447.5, ENST00000522558.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAGCCCAACACACGCACGACTCGATTGGACAGCCGCTCGACGCGCTaGAGTACAGCAGCCATTCCCGCCTCAGCCGCCCGCCGGCGTGTC | + |
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Preference number: 5 (lower is better) Translates to: QPNTRTTRLDSRSTR*STAAIPASAARRRV Trigger: GACACGCCGGCGGGCGGCTGAGGCGGGAATGGCTGCTGTACTGCAGCGCGTCGAGCGGCTGTCCAATCGAGTCGTGCGTGTGTTGGGCTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000276590.5 ENST00000522447.5 |
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| CDS CCA 90 bp | GGGTCATGGGACCCGGGTTACAGCCCAACACACGCACGACTCGATTaGACAGCCGCTCGACGCGCTGCAGTACAGCAGCCATTCCCGCCT | + |
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Preference number: 5 (lower is better) Translates to: GSWDPGYSPTHARLD*TAARRAAVQQPFPP Trigger: AGGCGGGAATGGCTGCTGTACTGCAGCGCGTCGAGCGGCTGTCCAATCGAGTCGTGCGTGTGTTGGGCTGTAACCCGGGTCCCATGACCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000276590.5 ENST00000522447.5 |
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| CDS CCA 90 bp | TGGGGCCGGTCCCCACTAGGTAGGTGTTGGTGCCTTGGAGGGTCATaGGACCCGGGTTACAGCCCAACACACGCACGACTCGATTGGACA | + |
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Preference number: 5 (lower is better) Translates to: WGRSPLGRCWCLGGS*DPGYSPTHARLDWT Trigger: TGTCCAATCGAGTCGTGCGTGTGTTGGGCTGTAACCCGGGTCCCATGACCCTCCAAGGCACCAACACCTACCTAGTGGGGACCGGCCCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000276590.5 ENST00000522447.5 |
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| CDS GCA 90 bp | GTCACTACAATTTCCTGGATTGCTGTGTTAAATTCAGTTAGAGCCTaGTTTAAACAGCTGATGTATTCTGGAATTGCTGGTTCTCCAGTG | + |
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Preference number: 5 (lower is better) Translates to: VTTISWIAVLNSVRA*FKQLMYSGIAGSPV Trigger: CACTGGAGAACCAGCAATTCCAGAATACATCAGCTGTTTAAAGCAGGCTCTAACTGAATTTAACACAGCAATCCAGGAAATTGTAGTGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000276590.5 ENST00000522447.5 |
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| CDS GCA 72 bp | ACACGCACGACTCGATTGGACAGCCGCTCGACGCGCTaGAGTACAGCAGCCATTCCCGCCTCAGCCGCCCGC | + |
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Preference number: 6 (lower is better) Translates to: TRTTRLDSRSTR*STAAIPASAAR Trigger: GCGGGCGGCTGAGGCGGGAATGGCTGCTGTACTGCAGCGCGTCGAGCGGCTGTCCAATCGAGTCGTGCGTGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000276590.5 ENST00000522447.5 |
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| CDS CAA 72 bp | GGACCCGGGTTACAGCCCAACACACGCACGACTCGATaGGACAGCCGCTCGACGCGCTGCAGTACAGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: GPGLQPNTRTTR*DSRSTRCSTAA Trigger: GGCTGCTGTACTGCAGCGCGTCGAGCGGCTGTCCAATCGAGTCGTGCGTGTGTTGGGCTGTAACCCGGGTCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000276590.5 ENST00000522447.5 |
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| CDS CAA 90 bp | AGGGTCATGGGACCCGGGTTACAGCCCAACACACGCACGACTCGATaGGACAGCCGCTCGACGCGCTGCAGTACAGCAGCCATTCCCGCC | + |
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Preference number: 6 (lower is better) Translates to: RVMGPGLQPNTRTTR*DSRSTRCSTAAIPA Trigger: GGCGGGAATGGCTGCTGTACTGCAGCGCGTCGAGCGGCTGTCCAATCGAGTCGTGCGTGTGTTGGGCTGTAACCCGGGTCCCATGACCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000276590.5 ENST00000522447.5 |
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| CDS GCA 72 bp | TTCTCCTGGGGCCGGTCCCCACTAGGTAGGTGTTGGTaGCTTGGAGGGTCATGGGACCCGGGTTACAGCCCA | + |
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Preference number: 6 (lower is better) Translates to: FSWGRSPLGRCW*LGGSWDPGYSP Trigger: TGGGCTGTAACCCGGGTCCCATGACCCTCCAAGGCACCAACACCTACCTAGTGGGGACCGGCCCCAGGAGAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000276590.5 ENST00000522447.5 |
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| CDS CCA 72 bp | GACCCGGGTTACAGCCCAACACACGCACGACTCGATTaGACAGCCGCTCGACGCGCTGCAGTACAGCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: DPGYSPTHARLD*TAARRAAVQQP Trigger: TGGCTGCTGTACTGCAGCGCGTCGAGCGGCTGTCCAATCGAGTCGTGCGTGTGTTGGGCTGTAACCCGGGTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000276590.5 ENST00000522447.5 |
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| CDS CCA 72 bp | GGATTCTCCTGGGGCCGGTCCCCACTAGGTAGGTGTTaGTGCCTTGGAGGGTCATGGGACCCGGGTTACAGC | + |
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Preference number: 6 (lower is better) Translates to: GFSWGRSPLGRC*CLGGSWDPGYS Trigger: GCTGTAACCCGGGTCCCATGACCCTCCAAGGCACCAACACCTACCTAGTGGGGACCGGCCCCAGGAGAATCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000276590.5 ENST00000522447.5 |
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| CDS TCA 72 bp | AAGATAGCATTTTCCTCTTCTAAGAGTAGAGCCATGTaGTCATCAGTGTGGCCAGGGGTATATAGAACTCTG | + |
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Preference number: 6 (lower is better) Translates to: KIAFSSSKSRAM*SSVWPGVYRTL Trigger: CAGAGTTCTATATACCCCTGGCCACACTGATGATCACATGGCTCTACTCTTAGAAGAGGAAAATGCTATCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000517601.1 |
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| CDS TCA 72 bp | AAGATAGCATTTTCCTCTTCTAAGAGTAGAGCCATGTaGTCATCAGTGTGGCCAGGGGTATATAGAACTCTT | + |
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Preference number: 6 (lower is better) Translates to: KIAFSSSKSRAM*SSVWPGVYRTL Trigger: AAGAGTTCTATATACCCCTGGCCACACTGATGATCACATGGCTCTACTCTTAGAAGAGGAAAATGCTATCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000276590.5 ENST00000522447.5 |
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| CDS CAA 90 bp | TGTAAGAATTTGCTGCTCTCGAATATTTCTGTGAGAAATGTATTGTaGAATTTTAGCTTCAGCATTATGAATTACTGGGCCATGTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: CKNLLLSNISVRNVL*NFSFSIMNYWAMSW Trigger: CCAGGACATGGCCCAGTAATTCATAATGCTGAAGCTAAAATTCAACAATACATTTCTCACAGAAATATTCGAGAGCAGCAAATTCTTACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000276590.5 ENST00000522447.5 ENST00000522558.1 |
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