Pregenerated sensors for KRTAP4-5 (Homo sapiens)
Ensembl gene IDs: ENSG00000198271Ensembl transcript IDs: ENST00000343246.6
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGATTGTCTGTCATTTCCTAGAAGAGCTGAATGTCCACTCTGAATaGCACATGAGACAAACTGGCAGGGAAGTGTTCATTTTTCCAGTG | + |
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Preference number: 1 (lower is better) Translates to: VIVCHFLEELNVHSE*HMRQTGREVFIFPV Trigger: CACTGGAAAAATGAACACTTCCCTGCCAGTTTGTCTCATGTGGCATTCAGAGTGGACATTCAGCTCTTCTAGGAAATGACAGACAATCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000343246.6 |
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| 3UTR TCA 90 bp | GAATGTGATTGTCTGTCATTTCCTAGAAGAGCTGAATGTCCACTCTaGATGCCACATGAGACAAACTGGCAGGGAAGTGTTCATTTTTCC | + |
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Preference number: 1 (lower is better) Translates to: ECDCLSFPRRAECPL*MPHETNWQGSVHFS Trigger: GGAAAAATGAACACTTCCCTGCCAGTTTGTCTCATGTGGCATTCAGAGTGGACATTCAGCTCTTCTAGGAAATGACAGACAATCACATTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000343246.6 |
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| 3UTR-3UTR CCA 90 bp | TGTCATTTCCTAGAAGAGCTGAATGTCCACTCTGAATGCCACATGAGACAAACTTTTCCAGTGACTGGCTaGCTACAGTGCATTTTAAAT | + |
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Preference number: 2 (lower is better) Translates to: CHFLEELNVHSECHMRQTFPVTG*LQCILN Trigger: ATTTAAAATGCACTGTAGCCAGCCAGTCACTGGAAA...AGTTTGTCTCATGTGGCATTCAGAGTGGACATTCAGCTCTTCTAGGAAATGACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000343246.6 |
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| 3UTR TCA 72 bp | TGTCTGTCATTTCCTAGAAGAGCTGAATGTCCACTCTaGATGCCACATGAGACAAACTGGCAGGGAAGTGTT | + |
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Preference number: 3 (lower is better) Translates to: CLSFPRRAECPL*MPHETNWQGSV Trigger: AACACTTCCCTGCCAGTTTGTCTCATGTGGCATTCAGAGTGGACATTCAGCTCTTCTAGGAAATGACAGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000343246.6 |
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| 3UTR GCA 72 bp | TGTCATTTCCTAGAAGAGCTGAATGTCCACTCTGAATaGCACATGAGACAAACTGGCAGGGAAGTGTTCATT | + |
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Preference number: 3 (lower is better) Translates to: CHFLEELNVHSE*HMRQTGREVFI Trigger: AATGAACACTTCCCTGCCAGTTTGTCTCATGTGGCATTCAGAGTGGACATTCAGCTCTTCTAGGAAATGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000343246.6 |
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| CDS-3UTR TCA 90 bp | ATTGTCTGTCATTTCCTAGAAGAGCTGAATGTCCACTCTGAATGCCACATGAGAACTCTGAATGCCACATaGGACAAACTGGCAGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: IVCHFLEELNVHSECHMRTLNAT*DKLAGK Trigger: CTTCCCTGCCAGTTTGTCTCATGTGGCATTCAGAGT...TCTCATGTGGCATTCAGAGTGGACATTCAGCTCTTCTAGGAAATGACAGACAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000343246.6 |
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| CDS-3UTR CCA 90 bp | ATGCCACATGAGACAAACTGGCAGGGAAGTGTTCATTTTTCCAGTGACTGGCTGTTTCCAGTGACTGGCTaGCTACAGTGCATTTTAAAT | + |
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Preference number: 4 (lower is better) Translates to: MPHETNWQGSVHFSSDWLFPVTG*LQCILN Trigger: ATTTAAAATGCACTGTAGCCAGCCAGTCACTGGAAA...CAGCCAGTCACTGGAAAAATGAACACTTCCCTGCCAGTTTGTCTCATGTGGCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000343246.6 |
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| CDS-3UTR TCA 90 bp | GAAGACACTGCTCATCTAAAAATAACTGCATTGGGGCCTGGCATAACATATTTTGCTGAATGTCCACTCTaGATGCCACATGAGACAAAC | + |
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Preference number: 4 (lower is better) Translates to: EDTAHLKITALGPGITYFAECPL*MPHETN Trigger: GTTTGTCTCATGTGGCATTCAGAGTGGACATTCAGC...AAAATATGTTATGCCAGGCCCCAATGCAGTTATTTTTAGATGAGCAGTGTCTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000343246.6 |
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| CDS-3UTR TCA 90 bp | TATATGAGATCATCACAGTTAGTGTCCCCTTCGAATGAAGACACTGCTCATCTAAGTGTCCCCTTCGAATaGAGACACTGCTCATCTAAA | + |
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Preference number: 4 (lower is better) Translates to: YMRSSQLVSPSNEDTAHLSVPFE*RHCSSK Trigger: TTTAGATGAGCAGTGTCTTCATTCGAAGGGGACACT...TAGATGAGCAGTGTCTTCATTCGAAGGGGACACTAACTGTGATGATCTCATATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000343246.6 |
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| CDS-3UTR GCA 90 bp | TATATGAGATCATCACAGTTAGTGTCCCCTTCGAATGAAGACACTGCTCATCTAAATGTCCACTCTGAATaGCACATGAGACAAACTGGC | + |
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Preference number: 4 (lower is better) Translates to: YMRSSQLVSPSNEDTAHLNVHSE*HMRQTG Trigger: GCCAGTTTGTCTCATGTGGCATTCAGAGTGGACATT...TAGATGAGCAGTGTCTTCATTCGAAGGGGACACTAACTGTGATGATCTCATATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000343246.6 |
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| CDS-3UTR GCA 90 bp | TTAGTGTCCCCTTCGAATGAAGACACTGCTCATCTAAAAATAACTGCATTGGGGTCATCTAAAAATAACTaGATTGGGGCCTGGCATAAC | + |
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Preference number: 4 (lower is better) Translates to: LVSPSNEDTAHLKITALGSSKNN*IGAWHN Trigger: GTTATGCCAGGCCCCAATGCAGTTATTTTTAGATGA...CCCCAATGCAGTTATTTTTAGATGAGCAGTGTCTTCATTCGAAGGGGACACTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt. Matches the following 1 transcripts: ENST00000343246.6 |
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| CDS-3UTR CCA 90 bp | CAGTTAGTGTCCCCTTCGAATGAAGACACTGCTCATCTAAAAATAACTGCATTGCATTTTTCCAGTGACTaGCTGGCTACAGTGCATTTT | + |
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Preference number: 4 (lower is better) Translates to: QLVSPSNEDTAHLKITALHFSSD*LATVHF Trigger: AAAATGCACTGTAGCCAGCCAGTCACTGGAAAAATG...CAATGCAGTTATTTTTAGATGAGCAGTGTCTTCATTCGAAGGGGACACTAACTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000343246.6 |
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| CDS-3UTR CAA 90 bp | GTCTGTCATTTCCTAGAAGAGCTGAATGTCCACTCTGAATGCCACATGAGACAACTAAAAATAACTGCATaGGGGCCTGGCATAACATAT | + |
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Preference number: 5 (lower is better) Translates to: VCHFLEELNVHSECHMRQLKITA*GPGITY Trigger: ATATGTTATGCCAGGCCCCAATGCAGTTATTTTTAG...TTGTCTCATGTGGCATTCAGAGTGGACATTCAGCTCTTCTAGGAAATGACAGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000343246.6 |
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