Pregenerated sensors for KRTAP4-4 (Homo sapiens)

Ensembl gene IDs: ENSG00000171396

Ensembl transcript IDs: ENST00000390661.5

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	ATAACTCAGCTCATAGATGAGCTACATCAAGAATGCTGGTTGATGAGAATCTGGAGAGCCTGCAGCAGCTaGAGCCACAGCAGGAGGAGC	+
Preference number: 2 (lower is better) Translates to: ITQLIDELHQECWLMRIWRACSS*SHSRRS Trigger: GCTCCTCCTGCTGTGGCTTCAGCTGCTGCAGGCTCT...CCAGATTCTCATCAACCAGCATTCTTGATGTAGCTCATCTATGAGCTGAGTTAT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000390661.5
3UTR-3UTR GCA 90 bp	ATAACTCAGCTCATAGATGAGCTACATCAAGAATGCTGGTTGATGAGAATCTGGGGCAGCAACTGGAGATaGAGCAGGAGAGCCTGCAGC	+
Preference number: 2 (lower is better) Translates to: ITQLIDELHQECWLMRIWGSNWR*SRRACS Trigger: GCTGCAGGCTCTCCTGCTGCATCTCCAGTTGCTGCC...CCAGATTCTCATCAACCAGCATTCTTGATGTAGCTCATCTATGAGCTGAGTTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390661.5
3UTR-3UTR CCA 90 bp	ATAACTCAGCTCATAGATGAGCTACATCAAGAATGCTGGTTGATGAGAATCTGGAGCACTAGAGCAGGTTaGGCGGCAGCACATGGTCTG	+
Preference number: 2 (lower is better) Translates to: ITQLIDELHQECWLMRIWSTRAG*AAAHGL Trigger: CAGACCATGTGCTGCCGCCCAACCTGCTCTAGTGCT...CCAGATTCTCATCAACCAGCATTCTTGATGTAGCTCATCTATGAGCTGAGTTAT 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000390661.5
CDS-3UTR TCA 90 bp	ATAACTCAGCTCATAGATGAGCTACATCAAGAATGCTGGTTGATGAGAATCTGGTCTGGTGAGTCCAGATaGCAGCCTCAGCAGCAAGAA	+
Preference number: 4 (lower is better) Translates to: ITQLIDELHQECWLMRIWSGESR*QPQQQE Trigger: TTCTTGCTGCTGAGGCTGTCATCTGGACTCACCAGA...CCAGATTCTCATCAACCAGCATTCTTGATGTAGCTCATCTATGAGCTGAGTTAT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000390661.5
CDS-3UTR CCA 90 bp	ATAACTCAGCTCATAGATGAGCTACATCAAGAATGCTGGTTGATGAGAATCTGGTGGTTTGCCAGCAGATaGGCTAGCAGCATAGAGACT	+
Preference number: 4 (lower is better) Translates to: ITQLIDELHQECWLMRIWWFASR*ASSIET Trigger: AGTCTCTATGCTGCTAGCCCATCTGCTGGCAAACCA...CCAGATTCTCATCAACCAGCATTCTTGATGTAGCTCATCTATGAGCTGAGTTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000390661.5
CDS-3UTR TCA 90 bp	ATAACTCAGCTCATAGATGAGCTACATCAAGAATGCTGGTTGATGAGAATCTGGAACTCAGCTCATAGATaGGCTACATCAAGAATGCTG	+
Preference number: 4 (lower is better) Translates to: ITQLIDELHQECWLMRIWNSAHR*ATSRML Trigger: CAGCATTCTTGATGTAGCTCATCTATGAGCTGAGTT...CCAGATTCTCATCAACCAGCATTCTTGATGTAGCTCATCTATGAGCTGAGTTAT 41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000390661.5
CDS-3UTR GCA 90 bp	ATAACTCAGCTCATAGATGAGCTACATCAAGAATGCTGGTTGATGAGAATCTGGGAGCTACATCAAGAATaGTGGTTGATGAGAATCTGG	+
Preference number: 4 (lower is better) Translates to: ITQLIDELHQECWLMRIWELHQE*WLMRIW Trigger: CCAGATTCTCATCAACCAGCATTCTTGATGTAGCTC...CCAGATTCTCATCAACCAGCATTCTTGATGTAGCTCATCTATGAGCTGAGTTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000390661.5
CDS-3UTR TCA 90 bp	ATAACTCAGCTCATAGATGAGCTACATCAAGAATGCTGGTTGATGAGAATCTGGAGAATTGGTTGGAACTaGAGTTTTCCAACTAGCTTC	+
Preference number: 4 (lower is better) Translates to: ITQLIDELHQECWLMRIWRIGWN*SFPTSF Trigger: GAAGCTAGTTGGAAAACTTCAGTTCCAACCAATTCT...CCAGATTCTCATCAACCAGCATTCTTGATGTAGCTCATCTATGAGCTGAGTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390661.5
CDS-3UTR CAA 90 bp	ATAACTCAGCTCATAGATGAGCTACATCAAGAATGCTGGTTGATGAGAATCTGGCAATCTAAGAATTGGTaGGAACTGAAGTTTTCCAAC	+
Preference number: 5 (lower is better) Translates to: ITQLIDELHQECWLMRIWQSKNW*ELKFSN Trigger: GTTGGAAAACTTCAGTTCCAACCAATTCTTAGATTG...CCAGATTCTCATCAACCAGCATTCTTGATGTAGCTCATCTATGAGCTGAGTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390661.5