Pregenerated sensors for KRTAP4-1 (Homo sapiens)
Ensembl gene IDs: ENSG00000198443Ensembl transcript IDs: ENST00000398472.1, ENST00000398472.2, ENST00000620667.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TCCATGGGAAAAATGAGTGGTATTAAATGTAGATGGATGCCCTTTCACCAGTTATCATGGGATGGTGACTaGCTCATGGTTGATAGTCCA | + |
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Preference number: 2 (lower is better) Translates to: SMGKMSGIKCRWMPFHQLSWDGD*LMVDSP Trigger: TGGACTATCAACCATGAGCCAGTCACCATCCCATGA...TAACTGGTGAAAGGGCATCCATCTACATTTAATACCACTCATTTTTCCCATGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000398472.1 ENST00000620667.1 |
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| 3UTR-3UTR CCA 90 bp | AGTGGTATTAAATGTAGATGGATGCCCTTTCACCAGTTACTTAGTGGAATAACATCATGGGATGGTGACTaGCTCATGGTTGATAGTCCA | + |
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Preference number: 2 (lower is better) Translates to: SGIKCRWMPFHQLLSGITSWDGD*LMVDSP Trigger: TGGACTATCAACCATGAGCCAGTCACCATCCCATGA...TGTTATTCCACTAAGTAACTGGTGAAAGGGCATCCATCTACATTTAATACCACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000398472.1 ENST00000620667.1 |
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| 3UTR-3UTR CCA 90 bp | AGTGGTATTAAATGTAGATGGATGCCCTTTCACCAGTTACTTAGTGGAATAACAGACACTTTCATATCATaGGATGGTGACTGGCTCATG | + |
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Preference number: 2 (lower is better) Translates to: SGIKCRWMPFHQLLSGITDTFIS*DGDWLM Trigger: CATGAGCCAGTCACCATCCCATGATATGAAAGTGTC...TGTTATTCCACTAAGTAACTGGTGAAAGGGCATCCATCTACATTTAATACCACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000398472.1 ENST00000620667.1 |
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| 3UTR-3UTR CCA 90 bp | AGTGGTATTAAATGTAGATGGATGCCCTTTCACCAGTTACTTAGTGGAATAACAATGGTGACTGGCTCATaGTTGATAGTCCAATATGAG | + |
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Preference number: 2 (lower is better) Translates to: SGIKCRWMPFHQLLSGITMVTGS*LIVQYE Trigger: CTCATATTGGACTATCAACCATGAGCCAGTCACCAT...TGTTATTCCACTAAGTAACTGGTGAAAGGGCATCCATCTACATTTAATACCACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000398472.1 ENST00000620667.1 |
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| 3UTR-3UTR CCA 90 bp | CAGGATAATAAAGCTGATGGCCATTTAACACATGGACAAGTTGATATAAATGACATGGTGACTGGCTCATaGTTGATAGTCCAATATGAG | + |
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Preference number: 2 (lower is better) Translates to: QDNKADGHLTHGQVDINDMVTGS*LIVQYE Trigger: CTCATATTGGACTATCAACCATGAGCCAGTCACCAT...GTCATTTATATCAACTTGTCCATGTGTTAAATGGCCATCAGCTTTATTATCCTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000398472.1 ENST00000620667.1 |
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| 3UTR CCA 72 bp | AGATCCATGGGAAAAATGAGTGGTATTAAATGTAGATaGATGCCCTTTCACCAGTTACTTAGTGGAATAACA | + |
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Preference number: 3 (lower is better) Translates to: RSMGKMSGIKCR*MPFHQLLSGIT Trigger: TGTTATTCCACTAAGTAACTGGTGAAAGGGCATCCATCTACATTTAATACCACTCATTTTTCCCATGGATCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000398472.1 ENST00000620667.1 |
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| CDS-3UTR TCA 90 bp | GGGAAGAGATCCATGGGAAAAATGAGTGGTATTAAATGTAGATGGATGCCCTTTACTGCATCATGCATCTaGGGTCTGAATGCTGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: GKRSMGKMSGIKCRWMPFTASCI*GLNAAG Trigger: CCCAGCAGCATTCAGACCTCAGATGCATGATGCAGT...AAAGGGCATCCATCTACATTTAATACCACTCATTTTTCCCATGGATCTCTTCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000620667.1 |
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| CDS-3UTR CCA 90 bp | AGTGGTATTAAATGTAGATGGATGCCCTTTCACCAGTTACTTAGTGGAATAACATTGCACGGCAGCAGGTaGTCTGACAGCAGAGTGGAC | + |
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Preference number: 4 (lower is better) Translates to: SGIKCRWMPFHQLLSGITLHGSR*SDSRVD Trigger: GTCCACTCTGCTGTCAGACCACCTGCTGCCGTGCAA...TGTTATTCCACTAAGTAACTGGTGAAAGGGCATCCATCTACATTTAATACCACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000620667.1 |
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| CDS-3UTR GCA 90 bp | GGGAAGAGATCCATGGGAAAAATGAGTGGTATTAAATGTAGATGGATGCCCTTTCATCTGAGGTCTGAATaGTGCTGGGAAGAGATCCAT | + |
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Preference number: 4 (lower is better) Translates to: GKRSMGKMSGIKCRWMPFHLRSE*CWEEIH Trigger: ATGGATCTCTTCCCAGCAGCATTCAGACCTCAGATG...AAAGGGCATCCATCTACATTTAATACCACTCATTTTTCCCATGGATCTCTTCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000620667.1 |
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| CDS-3UTR CCA 90 bp | GGGAAGAGATCCATGGGAAAAATGAGTGGTATTAAATGTAGATGGATGCCCTTTGACACTTTCATATCATaGGATGGTGACTGGCTCATG | + |
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Preference number: 4 (lower is better) Translates to: GKRSMGKMSGIKCRWMPFDTFIS*DGDWLM Trigger: CATGAGCCAGTCACCATCCCATGATATGAAAGTGTC...AAAGGGCATCCATCTACATTTAATACCACTCATTTTTCCCATGGATCTCTTCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000620667.1 |
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| CDS-3UTR TCA 90 bp | CAGGATAATAAAGCTGATGGCCATTTAACACATGGACAAGTTGATATAAATGACCATGCATCTGAGGTCTaGATGCTGCTGGGAAGAGAT | + |
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Preference number: 4 (lower is better) Translates to: QDNKADGHLTHGQVDINDHASEV*MLLGRD Trigger: ATCTCTTCCCAGCAGCATTCAGACCTCAGATGCATG...GTCATTTATATCAACTTGTCCATGTGTTAAATGGCCATCAGCTTTATTATCCTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000620667.1 |
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| CDS-3UTR TCA 90 bp | AGTGGTATTAAATGTAGATGGATGCCCTTTCACCAGTTACTTAGTGGAATAACAGTTGATAGTCCAATATaGGGTTCAACAAGAGGATCC | + |
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Preference number: 4 (lower is better) Translates to: SGIKCRWMPFHQLLSGITVDSPI*GSTRGS Trigger: GGATCCTCTTGTTGAACCTCATATTGGACTATCAAC...TGTTATTCCACTAAGTAACTGGTGAAAGGGCATCCATCTACATTTAATACCACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000620667.1 |
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| CDS-3UTR CCA 90 bp | CAGGATAATAAAGCTGATGGCCATTTAACACATGGACAAGTTGATATAAATGACGGTATTAAATGTAGATaGATGCCCTTTCACCAGTTA | + |
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Preference number: 4 (lower is better) Translates to: QDNKADGHLTHGQVDINDGIKCR*MPFHQL Trigger: TAACTGGTGAAAGGGCATCCATCTACATTTAATACC...GTCATTTATATCAACTTGTCCATGTGTTAAATGGCCATCAGCTTTATTATCCTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000620667.1 |
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| CDS-3UTR GCA 90 bp | CAGGATAATAAAGCTGATGGCCATTTAACACATGGACAAGTTGATATAAATGACTTAAATGTAGATGGATaGCCTTTCACCAGTTACTTA | + |
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Preference number: 4 (lower is better) Translates to: QDNKADGHLTHGQVDINDLNVDG*PFTSYL Trigger: TAAGTAACTGGTGAAAGGGCATCCATCTACATTTAA...GTCATTTATATCAACTTGTCCATGTGTTAAATGGCCATCAGCTTTATTATCCTG 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000620667.1 |
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| CDS-3UTR CAA 90 bp | GGGAAGAGATCCATGGGAAAAATGAGTGGTATTAAATGTAGATGGATGCCCTTTCTCTTGGCAGAGGCCTaGATCACAGCCCTGGTCAGA | + |
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Preference number: 5 (lower is better) Translates to: GKRSMGKMSGIKCRWMPFLLAEA*ITALVR Trigger: TCTGACCAGGGCTGTGATCAAGGCCTCTGCCAAGAG...AAAGGGCATCCATCTACATTTAATACCACTCATTTTTCCCATGGATCTCTTCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000620667.1 |
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| CDS-3UTR CAA 90 bp | TCCATGGGAAAAATGAGTGGTATTAAATGTAGATGGATGCCCTTTCACCAGTTAGTGACTGGCTCATGGTaGATAGTCCAATATGAGGTT | + |
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Preference number: 5 (lower is better) Translates to: SMGKMSGIKCRWMPFHQLVTGSW*IVQYEV Trigger: AACCTCATATTGGACTATCAACCATGAGCCAGTCAC...TAACTGGTGAAAGGGCATCCATCTACATTTAATACCACTCATTTTTCCCATGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000620667.1 |
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| CDS TCA 72 bp | TGGGATGGTGACTGGCTCATGGTTGATAGTCCAATATaGGGTTCAACAAGAGGATCCACAGCAGCTGGGGCG | + |
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Preference number: 6 (lower is better) Translates to: WDGDWLMVDSPI*GSTRGSTAAGA Trigger: CGCCCCAGCTGCTGTGGATCCTCTTGTTGAACCTCATATTGGACTATCAACCATGAGCCAGTCACCATCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000398472.2 ENST00000620667.1 |
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| CDS CAA 72 bp | ACACTTTCATATCATGGGATGGTGACTGGCTCATGGTaGATAGTCCAATATGAGGTTCAACAAGAGGATCCA | + |
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Preference number: 6 (lower is better) Translates to: TLSYHGMVTGSW*IVQYEVQQEDP Trigger: TGGATCCTCTTGTTGAACCTCATATTGGACTATCAACCATGAGCCAGTCACCATCCCATGATATGAAAGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000398472.2 ENST00000620667.1 |
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| CDS CCA 72 bp | ATGACACTTTCATATCATGGGATGGTGACTGGCTCATaGTTGATAGTCCAATATGAGGTTCAACAAGAGGAT | + |
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Preference number: 6 (lower is better) Translates to: MTLSYHGMVTGS*LIVQYEVQQED Trigger: ATCCTCTTGTTGAACCTCATATTGGACTATCAACCATGAGCCAGTCACCATCCCATGATATGAAAGTGTCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000398472.2 ENST00000620667.1 |
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