Pregenerated sensors for KRTAP22-2 (Homo sapiens)

Ensembl gene IDs: ENSG00000206106

Ensembl transcript IDs: ENST00000382830.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	GAATCCATAAATAACCCTGTTGATGCAATTAGTGCATCACAAGAAAATGGCTCAATTCAGAGCCATAGCTaGAACCATAGTCCAGGCTAC	+
Preference number: 4 (lower is better) Translates to: ESINNPVDAISASQENGSIQSHS*NHSPGY Trigger: GTAGCCTGGACTATGGTTGCAGCTATGGCTCTGAAT...TGAGCCATTTTCTTGTGATGCACTAATTGCATCAACAGGGTTATTTATGGATTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000382830.2
CDS-3UTR GCA 90 bp	GAATCCATAAATAACCCTGTTGATGCAATTAGTGCATCACAAGAAAATGGCTCAAGGAGCACGGAAAGTTaGAGGCATATCCAGAGTTAC	+
Preference number: 4 (lower is better) Translates to: ESINNPVDAISASQENGSRSTES*RHIQSY Trigger: GTAACTCTGGATATGCCTGCAACTTTCCGTGCTCCT...TGAGCCATTTTCTTGTGATGCACTAATTGCATCAACAGGGTTATTTATGGATTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000382830.2
CDS-3UTR CCA 90 bp	ATAACCCTGTTGATGCAATTAGTGCATCACAAGAAAATGGCTCAAAGTGATCAGTGTGGTAGTAGCACATaGTGTCAGAAGATGGAGTTC	+
Preference number: 4 (lower is better) Translates to: ITLLMQLVHHKKMAQSDQCGSST*CQKMEF Trigger: GAACTCCATCTTCTGACACCATGTGCTACTACCACA...CTGATCACTTTGAGCCATTTTCTTGTGATGCACTAATTGCATCAACAGGGTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000382830.2
CDS-3UTR TCA 90 bp	ACCCTGTTGATGCAATTAGTGCATCACAAGAAAATGGCTCAAAGTGATCAGCAAGAAAATGGCTCAAAGTaGTCAGCAATCAGAATTTCT	+
Preference number: 4 (lower is better) Translates to: TLLMQLVHHKKMAQSDQQENGSK*SAIRIS Trigger: AGAAATTCTGATTGCTGATCACTTTGAGCCATTTTC...TTGCTGATCACTTTGAGCCATTTTCTTGTGATGCACTAATTGCATCAACAGGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000382830.2
CDS-3UTR CCA 90 bp	ACCCTGTTGATGCAATTAGTGCATCACAAGAAAATGGCTCAAAGTGATCAGCAATGCATCACAAGAAAATaGCTCAAAGTGATCAGCAAT	+
Preference number: 4 (lower is better) Translates to: TLLMQLVHHKKMAQSDQQCITRK*LKVISN Trigger: ATTGCTGATCACTTTGAGCCATTTTCTTGTGATGCA...TTGCTGATCACTTTGAGCCATTTTCTTGTGATGCACTAATTGCATCAACAGGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000382830.2
CDS GCA 72 bp	GAGCCAATAGGAATCTTCCATAGGAGCACGGAAAGTTaGAGGCATATCCAGAGTTACCATATTCAGAGCCAT	+
Preference number: 6 (lower is better) Translates to: EPIGIFHRSTES*RHIQSYHIQSH Trigger: ATGGCTCTGAATATGGTAACTCTGGATATGCCTGCAACTTTCCGTGCTCCTATGGAAGATTCCTATTGGCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000382830.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu