Pregenerated sensors for KRTAP2-4 (Homo sapiens)
Ensembl gene IDs: ENSG00000213417Ensembl transcript IDs: ENST00000394015.3, ENST00000572903.2
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AAAGATGATGGTGACAGTTTGAGCAGTAAAAACCATCAGGTTGTAGAATGTGTTGTGGTAATGGACGTCTaGTTACACCAGGCTGTATCC | + |
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Preference number: 2 (lower is better) Translates to: KDDGDSLSSKNHQVVECVVVMDV*LHQAVS Trigger: GGATACAGCCTGGTGTAAGCAGACGTCCATTACCAC...AACACATTCTACAACCTGATGGTTTTTACTGCTCAAACTGTCACCATCATCTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| 3UTR-3UTR CCA 90 bp | AAAGATGATGGTGACAGTTTGAGCAGTAAAAACCATCAGGTTGTAGAATGTGTTAGACACCTGAAAATGTaGGTGAGGGTGGTAATGGAC | + |
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Preference number: 2 (lower is better) Translates to: KDDGDSLSSKNHQVVECVRHLKM*VRVVMD Trigger: GTCCATTACCACCCTCACCCACATTTTCAGGTGTCT...AACACATTCTACAACCTGATGGTTTTTACTGCTCAAACTGTCACCATCATCTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| 3UTR CAA 90 bp | ATTGACAACAGTGAGCAACACATTGCAAAAGATGATGGTGACAGTTaGAGCAGTAAAAACCATCAGGTTGTAGAATGTGTTTGCAAAGTC | + |
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Preference number: 2 (lower is better) Translates to: IDNSEQHIAKDDGDS*SSKNHQVVECVCKV Trigger: GACTTTGCAAACACATTCTACAACCTGATGGTTTTTACTGCTCAAACTGTCACCATCATCTTTTGCAATGTGTTGCTCACTGTTGTCAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| 3UTR-3UTR CAA 90 bp | GGTTGTAGAATGTGTTTGCAAAGTCCACCCCAGGAATTCTTAAAGGTCGATTTATTAGGCTTCAGTGTATaGCTCTGTGGGGGCATTGGG | + |
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Preference number: 3 (lower is better) Translates to: GCRMCLQSPPQEFLKVDLLGFSV*LCGGIG Trigger: CCCAATGCCCCCACAGAGCAATACACTGAAGCCTAA...TAAATCGACCTTTAAGAATTCCTGGGGTGGACTTTGCAAACACATTCTACAACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| 3UTR-3UTR CAA 90 bp | CAAAGTCCACCCCAGGAATTCTTAAAGGTCGATTTACTATCCATAATGACTAAGTTAGGCTTCAGTGTATaGCTCTGTGGGGGCATTGGG | + |
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Preference number: 3 (lower is better) Translates to: QSPPQEFLKVDLLSIMTKLGFSV*LCGGIG Trigger: CCCAATGCCCCCACAGAGCAATACACTGAAGCCTAA...CTTAGTCATTATGGATAGTAAATCGACCTTTAAGAATTCCTGGGGTGGACTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR CCA 90 bp | GAGGGTGGTAATGGACGTCTGCTTACACCAGGCTGTATCCAGATGGTAAAAATCGCTCTGTGGGGGCATTaGGGTCTCAGCAGGAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: EGGNGRLLTPGCIQMVKIALWGH*GLSRRR Trigger: CCTCCTCCTGCTGAGACCCCAATGCCCCCACAGAGC...GATTTTTACCATCTGGATACAGCCTGGTGTAAGCAGACGTCCATTACCACCCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR CCA 90 bp | ACGTCTGCTTACACCAGGCTGTATCCAGATGGTAAAAATCACTATTGTCACCTTGCTCTGTGGGGGCATTaGGGTCTCAGCAGGAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: TSAYTRLYPDGKNHYCHLALWGH*GLSRRR Trigger: CCTCCTCCTGCTGAGACCCCAATGCCCCCACAGAGC...AAGGTGACAATAGTGATTTTTACCATCTGGATACAGCCTGGTGTAAGCAGACGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR GCA 90 bp | GAGGGTGGTAATGGACGTCTGCTTACACCAGGCTGTATCCAGATGGTAAAAATCGTGGTAATGGACGTCTaGTTACACCAGGCTGTATCC | + |
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Preference number: 4 (lower is better) Translates to: EGGNGRLLTPGCIQMVKIVVMDV*LHQAVS Trigger: GGATACAGCCTGGTGTAAGCAGACGTCCATTACCAC...GATTTTTACCATCTGGATACAGCCTGGTGTAAGCAGACGTCCATTACCACCCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR CCA 90 bp | CAAAGTCCACCCCAGGAATTCTTAAAGGTCGATTTACTATCCATAATGACTAAGCAGTGTATTGCTCTGTaGGGGCATTGGGGTCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: QSPPQEFLKVDLLSIMTKQCIAL*GHWGLS Trigger: GCTGAGACCCCAATGCCCCCACAGAGCAATACACTG...CTTAGTCATTATGGATAGTAAATCGACCTTTAAGAATTCCTGGGGTGGACTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR CCA 90 bp | AAAGATGATGGTGACAGTTTGAGCAGTAAAAACCATCAGGTTGTAGAATGTGTTCAGTGTATTGCTCTGTaGGGGCATTGGGGTCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: KDDGDSLSSKNHQVVECVQCIAL*GHWGLS Trigger: GCTGAGACCCCAATGCCCCCACAGAGCAATACACTG...AACACATTCTACAACCTGATGGTTTTTACTGCTCAAACTGTCACCATCATCTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR GCA 90 bp | TTTGCAAAGTCCACCCCAGGAATTCTTAAAGGTCGATTTACTATCCATAATGACGTGGTAATGGACGTCTaGTTACACCAGGCTGTATCC | + |
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Preference number: 4 (lower is better) Translates to: FAKSTPGILKGRFTIHNDVVMDV*LHQAVS Trigger: GGATACAGCCTGGTGTAAGCAGACGTCCATTACCAC...GTCATTATGGATAGTAAATCGACCTTTAAGAATTCCTGGGGTGGACTTTGCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR CCA 90 bp | GGTTGTAGAATGTGTTTGCAAAGTCCACCCCAGGAATTCTTAAAGGTCGATTTAAGACACCTGAAAATGTaGGTGAGGGTGGTAATGGAC | + |
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Preference number: 4 (lower is better) Translates to: GCRMCLQSPPQEFLKVDLRHLKM*VRVVMD Trigger: GTCCATTACCACCCTCACCCACATTTTCAGGTGTCT...TAAATCGACCTTTAAGAATTCCTGGGGTGGACTTTGCAAACACATTCTACAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR TCA 90 bp | GGTAATGGACGTCTGCTTACACCAGGCTGTATCCAGATGGTAAAAATCACTATTATGATGGTGACAGTTTaGGCAGTAAAAACCATCAGG | + |
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Preference number: 4 (lower is better) Translates to: GNGRLLTPGCIQMVKITIMMVTV*AVKTIR Trigger: CCTGATGGTTTTTACTGCTCAAACTGTCACCATCAT...AATAGTGATTTTTACCATCTGGATACAGCCTGGTGTAAGCAGACGTCCATTACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR TCA 90 bp | CAAAGTCCACCCCAGGAATTCTTAAAGGTCGATTTACTATCCATAATGACTAAGATGATGGTGACAGTTTaGGCAGTAAAAACCATCAGG | + |
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Preference number: 4 (lower is better) Translates to: QSPPQEFLKVDLLSIMTKMMVTV*AVKTIR Trigger: CCTGATGGTTTTTACTGCTCAAACTGTCACCATCAT...CTTAGTCATTATGGATAGTAAATCGACCTTTAAGAATTCCTGGGGTGGACTTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR GCA 90 bp | AAAGATGATGGTGACAGTTTGAGCAGTAAAAACCATCAGGTTGTAGAATGTGTTGTTGTAGAATGTGTTTaGAAAGTCCACCCCAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: KDDGDSLSSKNHQVVECVVVECV*KVHPRN Trigger: ATTCCTGGGGTGGACTTTGCAAACACATTCTACAAC...AACACATTCTACAACCTGATGGTTTTTACTGCTCAAACTGTCACCATCATCTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| 3UTR CAA 72 bp | AGTGAGCAACACATTGCAAAAGATGATGGTGACAGTTaGAGCAGTAAAAACCATCAGGTTGTAGAATGTGTT | + |
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Preference number: 4 (lower is better) Translates to: SEQHIAKDDGDS*SSKNHQVVECV Trigger: AACACATTCTACAACCTGATGGTTTTTACTGCTCAAACTGTCACCATCATCTTTTGCAATGTGTTGCTCACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR CAA 90 bp | TGTAGACACCTGAAAATGTGGGTGAGGGTGGTAATGGACGTCTGCTTACACCAGTGCTCTGTGGGGGCATaGGGGTCTCAGCAGGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: CRHLKMWVRVVMDVCLHQCSVGA*GSQQEE Trigger: CTCCTCCTGCTGAGACCCCAATGCCCCCACAGAGCA...CTGGTGTAAGCAGACGTCCATTACCACCCTCACCCACATTTTCAGGTGTCTACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR CAA 90 bp | AAACCATCAGGTTGTAGAATGTGTTTGCAAAGTCCACCCCAGGAATTCTTAAAGTGCTCTGTGGGGGCATaGGGGTCTCAGCAGGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: KPSGCRMCLQSPPQEFLKCSVGA*GSQQEE Trigger: CTCCTCCTGCTGAGACCCCAATGCCCCCACAGAGCA...CTTTAAGAATTCCTGGGGTGGACTTTGCAAACACATTCTACAACCTGATGGTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR CAA 90 bp | GGTGGTAATGGACGTCTGCTTACACCAGGCTGTATCCAGATGGTAAAAATCACTTTAGGCTTCAGTGTATaGCTCTGTGGGGGCATTGGG | + |
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Preference number: 5 (lower is better) Translates to: GGNGRLLTPGCIQMVKITLGFSV*LCGGIG Trigger: CCCAATGCCCCCACAGAGCAATACACTGAAGCCTAA...AGTGATTTTTACCATCTGGATACAGCCTGGTGTAAGCAGACGTCCATTACCACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR CAA 90 bp | TCTGCTTACACCAGGCTGTATCCAGATGGTAAAAATCACTATTGTCACCTTGTGGGTTGTAGAATGTGTTaGCAAAGTCCACCCCAGGAA | + |
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Preference number: 5 (lower is better) Translates to: SAYTRLYPDGKNHYCHLVGCRMC*QSPPQE Trigger: TTCCTGGGGTGGACTTTGCAAACACATTCTACAACC...CACAAGGTGACAATAGTGATTTTTACCATCTGGATACAGCCTGGTGTAAGCAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR CAA 90 bp | AAAGATGATGGTGACAGTTTGAGCAGTAAAAACCATCAGGTTGTAGAATGTGTTTTAGGCTTCAGTGTATaGCTCTGTGGGGGCATTGGG | + |
|
Preference number: 5 (lower is better) Translates to: KDDGDSLSSKNHQVVECVLGFSV*LCGGIG Trigger: CCCAATGCCCCCACAGAGCAATACACTGAAGCCTAA...AACACATTCTACAACCTGATGGTTTTTACTGCTCAAACTGTCACCATCATCTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR CAA 90 bp | GGTAATGGACGTCTGCTTACACCAGGCTGTATCCAGATGGTAAAAATCACTATTGATGATGGTGACAGTTaGAGCAGTAAAAACCATCAG | + |
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Preference number: 5 (lower is better) Translates to: GNGRLLTPGCIQMVKITIDDGDS*SSKNHQ Trigger: CTGATGGTTTTTACTGCTCAAACTGTCACCATCATC...AATAGTGATTTTTACCATCTGGATACAGCCTGGTGTAAGCAGACGTCCATTACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR CAA 90 bp | TCTGCTTACACCAGGCTGTATCCAGATGGTAAAAATCACTATTGTCACCTTGTGGATGATGGTGACAGTTaGAGCAGTAAAAACCATCAG | + |
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Preference number: 5 (lower is better) Translates to: SAYTRLYPDGKNHYCHLVDDGDS*SSKNHQ Trigger: CTGATGGTTTTTACTGCTCAAACTGTCACCATCATC...CACAAGGTGACAATAGTGATTTTTACCATCTGGATACAGCCTGGTGTAAGCAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR CAA 90 bp | ACGTCTGCTTACACCAGGCTGTATCCAGATGGTAAAAATCACTATTGTCACCTTACAGTGAGCAACACATaGCAAAAGATGATGGTGACA | + |
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Preference number: 5 (lower is better) Translates to: TSAYTRLYPDGKNHYCHLTVSNT*QKMMVT Trigger: TGTCACCATCATCTTTTGCAATGTGTTGCTCACTGT...AAGGTGACAATAGTGATTTTTACCATCTGGATACAGCCTGGTGTAAGCAGACGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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| CDS-3UTR CAA 90 bp | AAACCATCAGGTTGTAGAATGTGTTTGCAAAGTCCACCCCAGGAATTCTTAAAGACAGTGAGCAACACATaGCAAAAGATGATGGTGACA | + |
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Preference number: 5 (lower is better) Translates to: KPSGCRMCLQSPPQEFLKTVSNT*QKMMVT Trigger: TGTCACCATCATCTTTTGCAATGTGTTGCTCACTGT...CTTTAAGAATTCCTGGGGTGGACTTTGCAAACACATTCTACAACCTGATGGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000394015.3 ENST00000572903.2 |
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