Pregenerated sensors for KRTAP13-2 (Homo sapiens)

Ensembl gene IDs: ENSG00000182816

Ensembl transcript IDs: ENST00000399889.4

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	TCACAGTCTGAAAGAACTAGCCTGTCCAGCCAGTACTTGATGCCAGAGAAAGGAGCTCTACGTAGAGACTaGGACACTTTGCTTAAAAGG	+
Preference number: 2 (lower is better) Translates to: SQSERTSLSSQYLMPEKGALRRD*DTLLKR Trigger: CCTTTTAAGCAAAGTGTCTCAGTCTCTACGTAGAGC...TCCTTTCTCTGGCATCAAGTACTGGCTGGACAGGCTAGTTCTTTCAGACTGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399889.4
3UTR TCA 72 bp	CACAGTCTGAAAGAACTAGCCTGTCCAGCCAGTACTTaGTGCCAGAGAAAGGATGAAGAGCTAGTAGTAAGA	+
Preference number: 3 (lower is better) Translates to: HSLKELACPAST*CQRKDEELVVR Trigger: TCTTACTACTAGCTCTTCATCCTTTCTCTGGCATCAAGTACTGGCTGGACAGGCTAGTTCTTTCAGACTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000399889.4
CDS-3UTR TCA 90 bp	TCACAGTCTGAAAGAACTAGCCTGTCCAGCCAGTACTTGATGCCAGAGAAAGGATGTCCAGCCAGTACTTaGTGCCAGAGAAAGGATGAA	+
Preference number: 4 (lower is better) Translates to: SQSERTSLSSQYLMPEKGCPAST*CQRKDE Trigger: TTCATCCTTTCTCTGGCATCAAGTACTGGCTGGACA...TCCTTTCTCTGGCATCAAGTACTGGCTGGACAGGCTAGTTCTTTCAGACTGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000399889.4
CDS-3UTR GCA 90 bp	TCACAGTCTGAAAGAACTAGCCTGTCCAGCCAGTACTTGATGCCAGAGAAAGGATTCAGCAAGTTGATCTaGAGAAGGTTGATCCATAGG	+
Preference number: 4 (lower is better) Translates to: SQSERTSLSSQYLMPEKGFSKLI*RRLIHR Trigger: CCTATGGATCAACCTTCTGCAGATCAACTTGCTGAA...TCCTTTCTCTGGCATCAAGTACTGGCTGGACAGGCTAGTTCTTTCAGACTGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000399889.4
CDS-3UTR TCA 90 bp	ATTTCACAGTCTGAAAGAACTAGCCTGTCCAGCCAGTACTTGATGCCAGAGAAAATGCCAGAGAAAGGATaGAGAGCTAGTAGTAAGAGG	+
Preference number: 4 (lower is better) Translates to: ISQSERTSLSSQYLMPEKMPEKG*RASSKR Trigger: CCTCTTACTACTAGCTCTTCATCCTTTCTCTGGCAT...TTTCTCTGGCATCAAGTACTGGCTGGACAGGCTAGTTCTTTCAGACTGTGAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399889.4
CDS-3UTR GCA 90 bp	ATTTCACAGTCTGAAAGAACTAGCCTGTCCAGCCAGTACTTGATGCCAGAGAAAGAGACTGAGACACTTTaGTTAAAAGGTCTGGAAATT	+
Preference number: 4 (lower is better) Translates to: ISQSERTSLSSQYLMPEKETETL*LKGLEI Trigger: AATTTCCAGACCTTTTAAGCAAAGTGTCTCAGTCTC...TTTCTCTGGCATCAAGTACTGGCTGGACAGGCTAGTTCTTTCAGACTGTGAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399889.4
CDS-3UTR CAA 90 bp	ATTTCACAGTCTGAAAGAACTAGCCTGTCCAGCCAGTACTTGATGCCAGAGAAATTGATCTGCAGAAGGTaGATCCATAGGCTGGTCTGT	+
Preference number: 5 (lower is better) Translates to: ISQSERTSLSSQYLMPEKLICRR*IHRLVC Trigger: ACAGACCAGCCTATGGATCAACCTTCTGCAGATCAA...TTTCTCTGGCATCAAGTACTGGCTGGACAGGCTAGTTCTTTCAGACTGTGAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000399889.4
CDS TCA 72 bp	CTGGAAATGCCTATGATAACAGCTCTACGTAGAGACTaGGACACTTTGCTTAAAAGGTCTGGAAATTCAGCA	+
Preference number: 6 (lower is better) Translates to: LEMPMITALRRD*DTLLKRSGNSA Trigger: TGCTGAATTTCCAGACCTTTTAAGCAAAGTGTCTCAGTCTCTACGTAGAGCTGTTATCATAGGCATTTCCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399889.4

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