Pregenerated sensors for KRTAP1-5 (Homo sapiens)
Ensembl gene IDs: ENSG00000221852Ensembl transcript IDs: ENST00000361883.6, ENST00000572212.1
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTCTCCATCACAAGCAATGCAAAGTCTGAGAACTTGTTAGTGGTCCAGAGGTGGAGTTCAGAGACACTGTaGCCTAGGCAATTGAAAATA | + |
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Preference number: 2 (lower is better) Translates to: VSITSNAKSENLLVVQRWSSETL*PRQLKI Trigger: TATTTTCAATTGCCTAGGTCACAGTGTCTCTGAACT...CCACCTCTGGACCACTAACAAGTTCTCAGACTTTGCATTGCTTGTGATGGAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR-3UTR TCA 90 bp | CAAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTACTTCTGAGGTGGTCAAGGGATaGACAGTTCAGAGACACTGT | + |
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Preference number: 2 (lower is better) Translates to: QKPRDGSDVKMWKVQPTSEVVKG*TVQRHC Trigger: ACAGTGTCTCTGAACTGTTCATCCCTTGACCACCTC...AGAAGTAGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR CAA 90 bp | ATATACTTAGTAGTCTCCATCACAAGCAATGCAAAGTCTGAGAACTaGTTAGTGGTCCAGAGGTGGTCAAGGGATGAACAGTTCAGAGAC | + |
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Preference number: 2 (lower is better) Translates to: IYLVVSITSNAKSEN*LVVQRWSRDEQFRD Trigger: GTCTCTGAACTGTTCATCCCTTGACCACCTCTGGACCACTAACAAGTTCTCAGACTTTGCATTGCTTGTGATGGAGACTACTAAGTATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR-3UTR CCA 90 bp | GAGCTCATATACTTAGTAGTCTCCATCACAAGCAATGCAAAGTCTGAGAACTTGTTAGTGGTCCAGAGGTaGTCAAGGGATGAACAGTTC | + |
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Preference number: 2 (lower is better) Translates to: ELIYLVVSITSNAKSENLLVVQR*SRDEQF Trigger: GAACTGTTCATCCCTTGACCACCTCTGGACCACTAA...CAAGTTCTCAGACTTTGCATTGCTTGTGATGGAGACTACTAAGTATATGAGCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR-3UTR TCA 90 bp | ATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTACTTTCCATTCTCTCTGGTaGCTTGAGGAATGTCACTTG | + |
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Preference number: 2 (lower is better) Translates to: IQKPRDGSDVKMWKVQPTFHSLW*LEECHL Trigger: CAAGTGACATTCCTCAAGTCACCAGAGAGAATGGAA...AGTAGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTTGGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR-3UTR CCA 90 bp | AAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTACTTCTTTTAGTGGTCCAGAGGTaGTCAAGGGATGAACAGTTC | + |
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Preference number: 2 (lower is better) Translates to: KNQGMDQMLKCGKSSLLLLVVQR*SRDEQF Trigger: GAACTGTTCATCCCTTGACCACCTCTGGACCACTAA...AAGAAGTAGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR-3UTR TCA 90 bp | GCAGGCAAGATCATTATGATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGTTTCTGTGTCCCCAGTaGAGGGTCAAGGTATTCATT | + |
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Preference number: 2 (lower is better) Translates to: AGKIIMIQKPRDGSDVKMFLCPQ*RVKVFI Trigger: AATGAATACCTTGACCCTTCACTGGGGACACAGAAA...CATTTTAACATCTGATCCATCCCTTGGTTTTTGGATCATAATGATCTTGCCTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR-3UTR TCA 90 bp | GCAGGCAAGATCATTATGATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGTTCTCTCTGGTGACTTaGGGAATGTCACTTGGCTAT | + |
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Preference number: 2 (lower is better) Translates to: AGKIIMIQKPRDGSDVKMFSLVT*GMSLGY Trigger: ATAGCCAAGTGACATTCCTCAAGTCACCAGAGAGAA...CATTTTAACATCTGATCCATCCCTTGGTTTTTGGATCATAATGATCTTGCCTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR-3UTR TCA 90 bp | GCAGGCAAGATCATTATGATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGAAGCAATGCAAAGTCTaGGAACTTGTTAGTGGTCCA | + |
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Preference number: 2 (lower is better) Translates to: AGKIIMIQKPRDGSDVKMKQCKV*ELVSGP Trigger: TGGACCACTAACAAGTTCTCAGACTTTGCATTGCTT...CATTTTAACATCTGATCCATCCCTTGGTTTTTGGATCATAATGATCTTGCCTGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR-3UTR TCA 90 bp | GCAGGCAAGATCATTATGATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGCTACTTCTTAGAAGCTaGATGTTGGGTGATGAGCTT | + |
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Preference number: 2 (lower is better) Translates to: AGKIIMIQKPRDGSDVKMLLLRS*MLGDEL Trigger: AAGCTCATCACCCAACATTCAGCTTCTAAGAAGTAG...CATTTTAACATCTGATCCATCCCTTGGTTTTTGGATCATAATGATCTTGCCTGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR-3UTR CCA 90 bp | ATGATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTTTAGAAGCTGAATGTTaGGTGATGAGCTTCCATTCT | + |
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Preference number: 2 (lower is better) Translates to: MIQKPRDGSDVKMWKVQPLEAEC*VMSFHS Trigger: AGAATGGAAGCTCATCACCCAACATTCAGCTTCTAA...AGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTTGGATCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR-3UTR TCA 90 bp | GCAGGCAAGATCATTATGATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGAGTTCAGAGACACTGTaGCCTAGGCAATTGAAAATA | + |
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Preference number: 2 (lower is better) Translates to: AGKIIMIQKPRDGSDVKMSSETL*PRQLKI Trigger: TATTTTCAATTGCCTAGGTCACAGTGTCTCTGAACT...CATTTTAACATCTGATCCATCCCTTGGTTTTTGGATCATAATGATCTTGCCTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR CCA 72 bp | AATGCAAAGTCTGAGAACTTGTTAGTGGTCCAGAGGTaGTCAAGGGATGAACAGTTCAGAGACACTGTGACC | + |
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Preference number: 3 (lower is better) Translates to: NAKSENLLVVQR*SRDEQFRDTVT Trigger: GGTCACAGTGTCTCTGAACTGTTCATCCCTTGACCACCTCTGGACCACTAACAAGTTCTCAGACTTTGCATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR-3UTR CAA 90 bp | CAAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTACTTCTGCAAAGTCTGAGAACTaGTTAGTGGTCCAGAGGTGG | + |
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Preference number: 3 (lower is better) Translates to: QKPRDGSDVKMWKVQPTSAKSEN*LVVQRW Trigger: CCACCTCTGGACCACTAACAAGTTCTCAGACTTTGC...AGAAGTAGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR-3UTR CAA 90 bp | ATGATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTGCAAAGTCTGAGAACTaGTTAGTGGTCCAGAGGTGG | + |
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Preference number: 3 (lower is better) Translates to: MIQKPRDGSDVKMWKVQPAKSEN*LVVQRW Trigger: CCACCTCTGGACCACTAACAAGTTCTCAGACTTTGC...AGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTTGGATCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR TCA 72 bp | ATACTTAGTAGTCTCCATCACAAGCAATGCAAAGTCTaGGAACTTGTTAGTGGTCCAGAGGTGGTCAAGGGA | + |
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Preference number: 3 (lower is better) Translates to: ILSSLHHKQCKV*ELVSGPEVVKG Trigger: TCCCTTGACCACCTCTGGACCACTAACAAGTTCTCAGACTTTGCATTGCTTGTGATGGAGACTACTAAGTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR TCA 72 bp | ATGTTGGGTGATGAGCTTCCATTCTCTCTGGTGACTTaGGGAATGTCACTTGGCTATAATTTGGTGTCTTTG | + |
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Preference number: 3 (lower is better) Translates to: MLGDELPFSLVT*GMSLGYNLVSL Trigger: CAAAGACACCAAATTATAGCCAAGTGACATTCCTCAAGTCACCAGAGAGAATGGAAGCTCATCACCCAACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR-3UTR CAA 90 bp | ATGATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTTATATCCCAAGCAAATaGATGATCAGCAGGTGGCTT | + |
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Preference number: 3 (lower is better) Translates to: MIQKPRDGSDVKMWKVQPYIPSK*MISRWL Trigger: AAGCCACCTGCTGATCATCAATTTGCTTGGGATATA...AGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTTGGATCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR-3UTR CAA 90 bp | GCAGGCAAGATCATTATGATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGATTCTCTCTGGTGACTaGAGGAATGTCACTTGGCTA | + |
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Preference number: 3 (lower is better) Translates to: AGKIIMIQKPRDGSDVKMILSGD*RNVTWL Trigger: TAGCCAAGTGACATTCCTCAAGTCACCAGAGAGAAT...CATTTTAACATCTGATCCATCCCTTGGTTTTTGGATCATAATGATCTTGCCTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR-3UTR CAA 90 bp | ATGATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTATGGAAACATTAGACTaGTGGATAGTTCTCATGGAT | + |
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Preference number: 3 (lower is better) Translates to: MIQKPRDGSDVKMWKVQPMETLD*WIVLMD Trigger: ATCCATGAGAACTATCCACAAGTCTAATGTTTCCAT...AGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTTGGATCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR TCA 90 bp | GTCTCCATCACAAGCAATGCAAAGTCTGAGAACTTGTTAGTGGTCCAGAGGTGGGAGGTGGTCAAGGGATaGACAGTTCAGAGACACTGT | + |
|
Preference number: 4 (lower is better) Translates to: VSITSNAKSENLLVVQRWEVVKG*TVQRHC Trigger: ACAGTGTCTCTGAACTGTTCATCCCTTGACCACCTC...CCACCTCTGGACCACTAACAAGTTCTCAGACTTTGCATTGCTTGTGATGGAGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR TCA 90 bp | GTCTCCATCACAAGCAATGCAAAGTCTGAGAACTTGTTAGTGGTCCAGAGGTGGTTTCTGTGTCCCCAGTaGAGGGTCAAGGTATTCATT | + |
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Preference number: 4 (lower is better) Translates to: VSITSNAKSENLLVVQRWFLCPQ*RVKVFI Trigger: AATGAATACCTTGACCCTTCACTGGGGACACAGAAA...CCACCTCTGGACCACTAACAAGTTCTCAGACTTTGCATTGCTTGTGATGGAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| 3UTR CAA 72 bp | GTAGTCTCCATCACAAGCAATGCAAAGTCTGAGAACTaGTTAGTGGTCCAGAGGTGGTCAAGGGATGAACAG | + |
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Preference number: 4 (lower is better) Translates to: VVSITSNAKSEN*LVVQRWSRDEQ Trigger: CTGTTCATCCCTTGACCACCTCTGGACCACTAACAAGTTCTCAGACTTTGCATTGCTTGTGATGGAGACTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR TCA 90 bp | GTCTCCATCACAAGCAATGCAAAGTCTGAGAACTTGTTAGTGGTCCAGAGGTGGCTACTTCTTAGAAGCTaGATGTTGGGTGATGAGCTT | + |
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Preference number: 4 (lower is better) Translates to: VSITSNAKSENLLVVQRWLLLRS*MLGDEL Trigger: AAGCTCATCACCCAACATTCAGCTTCTAAGAAGTAG...CCACCTCTGGACCACTAACAAGTTCTCAGACTTTGCATTGCTTGTGATGGAGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR TCA 90 bp | AAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTACTTCTTGAGGTGGTCAAGGGATaGACAGTTCAGAGACACTGT | + |
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Preference number: 4 (lower is better) Translates to: KNQGMDQMLKCGKSSLLLEVVKG*TVQRHC Trigger: ACAGTGTCTCTGAACTGTTCATCCCTTGACCACCTC...AAGAAGTAGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR TCA 90 bp | CAAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTACTTCTTTTCTGTGTCCCCAGTaGAGGGTCAAGGTATTCATT | + |
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Preference number: 4 (lower is better) Translates to: QKPRDGSDVKMWKVQPTSFLCPQ*RVKVFI Trigger: AATGAATACCTTGACCCTTCACTGGGGACACAGAAA...AGAAGTAGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR TCA 90 bp | ATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTACTTTCTCTCTGGTGACTTaGGGAATGTCACTTGGCTAT | + |
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Preference number: 4 (lower is better) Translates to: IQKPRDGSDVKMWKVQPTFSLVT*GMSLGY Trigger: ATAGCCAAGTGACATTCCTCAAGTCACCAGAGAGAA...AGTAGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTTGGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR CCA 90 bp | GCAGGCAAGATCATTATGATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGTTAGTGGTCCAGAGGTaGTCAAGGGATGAACAGTTC | + |
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Preference number: 4 (lower is better) Translates to: AGKIIMIQKPRDGSDVKMLVVQR*SRDEQF Trigger: GAACTGTTCATCCCTTGACCACCTCTGGACCACTAA...CATTTTAACATCTGATCCATCCCTTGGTTTTTGGATCATAATGATCTTGCCTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR TCA 90 bp | TACTTAGTAGTCTCCATCACAAGCAATGCAAAGTCTGAGAACTTGTTAGTGGTCAAGCAATGCAAAGTCTaGGAACTTGTTAGTGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: YLVVSITSNAKSENLLVVKQCKV*ELVSGP Trigger: TGGACCACTAACAAGTTCTCAGACTTTGCATTGCTT...GACCACTAACAAGTTCTCAGACTTTGCATTGCTTGTGATGGAGACTACTAAGTA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR TCA 90 bp | GCAGGCAAGATCATTATGATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGTTCCATTCTCTCTGGTaGCTTGAGGAATGTCACTTG | + |
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Preference number: 4 (lower is better) Translates to: AGKIIMIQKPRDGSDVKMFHSLW*LEECHL Trigger: CAAGTGACATTCCTCAAGTCACCAGAGAGAATGGAA...CATTTTAACATCTGATCCATCCCTTGGTTTTTGGATCATAATGATCTTGCCTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR TCA 90 bp | GAGCTCATATACTTAGTAGTCTCCATCACAAGCAATGCAAAGTCTGAGAACTTGCAGGCAAGATCATTATaGTCCAAAAACCAAGGGATG | + |
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Preference number: 4 (lower is better) Translates to: ELIYLVVSITSNAKSENLQARSL*SKNQGM Trigger: CATCCCTTGGTTTTTGGATCATAATGATCTTGCCTG...CAAGTTCTCAGACTTTGCATTGCTTGTGATGGAGACTACTAAGTATATGAGCTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR TCA 90 bp | TACTTAGTAGTCTCCATCACAAGCAATGCAAAGTCTGAGAACTTGTTAGTGGTCAGTTCAGAGACACTGTaGCCTAGGCAATTGAAAATA | + |
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Preference number: 4 (lower is better) Translates to: YLVVSITSNAKSENLLVVSSETL*PRQLKI Trigger: TATTTTCAATTGCCTAGGTCACAGTGTCTCTGAACT...GACCACTAACAAGTTCTCAGACTTTGCATTGCTTGTGATGGAGACTACTAAGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR TCA 90 bp | AAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTACTTCTTCAGGCAAGATCATTATaGTCCAAAAACCAAGGGATG | + |
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Preference number: 4 (lower is better) Translates to: KNQGMDQMLKCGKSSLLLQARSL*SKNQGM Trigger: CATCCCTTGGTTTTTGGATCATAATGATCTTGCCTG...AAGAAGTAGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR CCA 90 bp | TACTTAGTAGTCTCCATCACAAGCAATGCAAAGTCTGAGAACTTGTTAGTGGTCTTAGAAGCTGAATGTTaGGTGATGAGCTTCCATTCT | + |
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Preference number: 4 (lower is better) Translates to: YLVVSITSNAKSENLLVVLEAEC*VMSFHS Trigger: AGAATGGAAGCTCATCACCCAACATTCAGCTTCTAA...GACCACTAACAAGTTCTCAGACTTTGCATTGCTTGTGATGGAGACTACTAAGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR TCA 90 bp | AAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTACTTCTTAGTTCAGAGACACTGTaGCCTAGGCAATTGAAAATA | + |
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Preference number: 4 (lower is better) Translates to: KNQGMDQMLKCGKSSLLLSSETL*PRQLKI Trigger: TATTTTCAATTGCCTAGGTCACAGTGTCTCTGAACT...AAGAAGTAGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR TCA 90 bp | ATGATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTTATCACAGATATAACTaGAATATCCAGCAGGCAAGA | + |
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Preference number: 4 (lower is better) Translates to: MIQKPRDGSDVKMWKVQPYHRYN*NIQQAR Trigger: TCTTGCCTGCTGGATATTTCAGTTATATCTGTGATA...AGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTTGGATCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR CCA 90 bp | GCAGGCAAGATCATTATGATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGTTAGAAGCTGAATGTTaGGTGATGAGCTTCCATTCT | + |
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Preference number: 4 (lower is better) Translates to: AGKIIMIQKPRDGSDVKMLEAEC*VMSFHS Trigger: AGAATGGAAGCTCATCACCCAACATTCAGCTTCTAA...CATTTTAACATCTGATCCATCCCTTGGTTTTTGGATCATAATGATCTTGCCTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR CCA 90 bp | TACTTAGTAGTCTCCATCACAAGCAATGCAAAGTCTGAGAACTTGTTAGTGGTCTCAGATGTTAAAATGTaGAAAGTCCAGCCTACTTCT | + |
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Preference number: 4 (lower is better) Translates to: YLVVSITSNAKSENLLVVSDVKM*KVQPTS Trigger: AGAAGTAGGCTGGACTTTCCACATTTTAACATCTGA...GACCACTAACAAGTTCTCAGACTTTGCATTGCTTGTGATGGAGACTACTAAGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR TCA 90 bp | GCAGGCAAGATCATTATGATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGTATCACAGATATAACTaGAATATCCAGCAGGCAAGA | + |
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Preference number: 4 (lower is better) Translates to: AGKIIMIQKPRDGSDVKMYHRYN*NIQQAR Trigger: TCTTGCCTGCTGGATATTTCAGTTATATCTGTGATA...CATTTTAACATCTGATCCATCCCTTGGTTTTTGGATCATAATGATCTTGCCTGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR CAA 90 bp | TACTTAGTAGTCTCCATCACAAGCAATGCAAAGTCTGAGAACTTGTTAGTGGTCGCAAAGTCTGAGAACTaGTTAGTGGTCCAGAGGTGG | + |
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Preference number: 5 (lower is better) Translates to: YLVVSITSNAKSENLLVVAKSEN*LVVQRW Trigger: CCACCTCTGGACCACTAACAAGTTCTCAGACTTTGC...GACCACTAACAAGTTCTCAGACTTTGCATTGCTTGTGATGGAGACTACTAAGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR CAA 90 bp | ATCCAAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTACTATTCTCTCTGGTGACTaGAGGAATGTCACTTGGCTA | + |
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Preference number: 5 (lower is better) Translates to: IQKPRDGSDVKMWKVQPTILSGD*RNVTWL Trigger: TAGCCAAGTGACATTCCTCAAGTCACCAGAGAGAAT...AGTAGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTTGGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR CAA 90 bp | CAAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTACTTCTTATATCCCAAGCAAATaGATGATCAGCAGGTGGCTT | + |
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Preference number: 5 (lower is better) Translates to: QKPRDGSDVKMWKVQPTSYIPSK*MISRWL Trigger: AAGCCACCTGCTGATCATCAATTTGCTTGGGATATA...AGAAGTAGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR CAA 90 bp | GAGCTCATATACTTAGTAGTCTCCATCACAAGCAATGCAAAGTCTGAGAACTTGTATATCCCAAGCAAATaGATGATCAGCAGGTGGCTT | + |
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Preference number: 5 (lower is better) Translates to: ELIYLVVSITSNAKSENLYIPSK*MISRWL Trigger: AAGCCACCTGCTGATCATCAATTTGCTTGGGATATA...CAAGTTCTCAGACTTTGCATTGCTTGTGATGGAGACTACTAAGTATATGAGCTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR CAA 90 bp | AAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTACTTCTTATTCTCTCTGGTGACTaGAGGAATGTCACTTGGCTA | + |
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Preference number: 5 (lower is better) Translates to: KNQGMDQMLKCGKSSLLLILSGD*RNVTWL Trigger: TAGCCAAGTGACATTCCTCAAGTCACCAGAGAGAAT...AAGAAGTAGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS-3UTR CAA 90 bp | AAAAACCAAGGGATGGATCAGATGTTAAAATGTGGAAAGTCCAGCCTACTTCTTATGGAAACATTAGACTaGTGGATAGTTCTCATGGAT | + |
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Preference number: 5 (lower is better) Translates to: KNQGMDQMLKCGKSSLLLMETLD*WIVLMD Trigger: ATCCATGAGAACTATCCACAAGTCTAATGTTTCCAT...AAGAAGTAGGCTGGACTTTCCACATTTTAACATCTGATCCATCCCTTGGTTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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| CDS TCA 72 bp | AGAGGTGGTCAAGGGATGAACAGTTCAGAGACACTGTaGCCTAGGCAATTGAAAATAAGCAAACTGGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: RGGQGMNSSETL*PRQLKISKLAF Trigger: GAAAGCCAGTTTGCTTATTTTCAATTGCCTAGGTCACAGTGTCTCTGAACTGTTCATCCCTTGACCACCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000361883.6 ENST00000572212.1 |
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