Pregenerated sensors for KRTAP1-1 (Homo sapiens)
Ensembl gene IDs: ENSG00000188581Ensembl transcript IDs: ENST00000306271.5, ENST00000573871.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | ATAGTATCTAACTCTTTTCACATTGTAGGACTTTGGCTGACAACCAGGTCTAGGTGTGTGATGAGAGGTTaGAAGCCCAGTTATAGGTAC | + |
|
Preference number: 2 (lower is better) Translates to: IVSNSFHIVGLWLTTRSRCVMRG*KPSYRY Trigger: GTACCTATAACTGGGCTTGCAACCTCTCATCACACA...CCTAGACCTGGTTGTCAGCCAAAGTCCTACAATGTGAAAAGAGTTAGATACTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000306271.5 ENST00000573871.1 |
||
| CDS-3UTR TCA 90 bp | AATTTGGCTAGTTTTAAGGTGCCATCTTATCAGGATCCCCAGCAGAAGGAGGTTTGTCAGGAGTTGATCTaGAGGTTGGGTTGCTTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: NLASFKVPSYQDPQQKEVCQELI*RLGCLE Trigger: CTCCAAGCAACCCAACCTTCAGATCAACTCCTGACA...AACCTCCTTCTGCTGGGGATCCTGATAAGATGGCACCTTAAAACTAGCCAAATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000306271.5 ENST00000573871.1 |
||
| CDS-3UTR CCA 90 bp | AATTTGGCTAGTTTTAAGGTGCCATCTTATCAGGATCCCCAGCAGAAGGAGGTTGAGGTTTTCAACAAGTaGGCTCAGAGCAGTAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: NLASFKVPSYQDPQQKEVEVFNK*AQSSSS Trigger: GCTGCTACTGCTCTGAGCCCACTTGTTGAAAACCTC...AACCTCCTTCTGCTGGGGATCCTGATAAGATGGCACCTTAAAACTAGCCAAATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000306271.5 ENST00000573871.1 |
||
| CDS-3UTR CCA 90 bp | GAGGTTGCAAGCCCAGTTATAGGTACTGGAGTTCAGAAGATTGTTAGGATTCTAGAGGTTTTCAACAAGTaGGCTCAGAGCAGTAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: EVASPVIGTGVQKIVRILEVFNK*AQSSSS Trigger: GCTGCTACTGCTCTGAGCCCACTTGTTGAAAACCTC...TAGAATCCTAACAATCTTCTGAACTCCAGTACCTATAACTGGGCTTGCAACCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000306271.5 ENST00000573871.1 |
||
| CDS-3UTR CCA 90 bp | TGTGTGATGAGAGGTTGCAAGCCCAGTTATAGGTACTGGAGTTCAGAAGATTGTCACATTGTAGGACTTTaGCTGACAACCAGGTCTAGG | + |
|
Preference number: 4 (lower is better) Translates to: CVMRGCKPSYRYWSSEDCHIVGL*LTTRSR Trigger: CCTAGACCTGGTTGTCAGCCAAAGTCCTACAATGTG...ACAATCTTCTGAACTCCAGTACCTATAACTGGGCTTGCAACCTCTCATCACACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000306271.5 ENST00000573871.1 |
||
| CDS-3UTR TCA 90 bp | GTATCTAACTCTTTTCACATTGTAGGACTTTGGCTGACAACCAGGTCTAGGAAATGTCAGGAGTTGATCTaGAGGTTGGGTTGCTTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: VSNSFHIVGLWLTTRSRKCQELI*RLGCLE Trigger: CTCCAAGCAACCCAACCTTCAGATCAACTCCTGACA...TTTCCTAGACCTGGTTGTCAGCCAAAGTCCTACAATGTGAAAAGAGTTAGATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000306271.5 ENST00000573871.1 |
||
| CDS-3UTR TCA 90 bp | GTATCTAACTCTTTTCACATTGTAGGACTTTGGCTGACAACCAGGTCTAGGAAACATGGTGTCAGGAGTTaGTCTGAAGGTTGGGTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: VSNSFHIVGLWLTTRSRKHGVRS*SEGWVA Trigger: AGCAACCCAACCTTCAGATCAACTCCTGACACCATG...TTTCCTAGACCTGGTTGTCAGCCAAAGTCCTACAATGTGAAAAGAGTTAGATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000306271.5 ENST00000573871.1 |
||
| CDS-3UTR GCA 90 bp | TGTGTGATGAGAGGTTGCAAGCCCAGTTATAGGTACTGGAGTTCAGAAGATTGTTGTGTGATGAGAGGTTaGAAGCCCAGTTATAGGTAC | + |
|
Preference number: 4 (lower is better) Translates to: CVMRGCKPSYRYWSSEDCCVMRG*KPSYRY Trigger: GTACCTATAACTGGGCTTGCAACCTCTCATCACACA...ACAATCTTCTGAACTCCAGTACCTATAACTGGGCTTGCAACCTCTCATCACACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000306271.5 ENST00000573871.1 |
||
| CDS-3UTR CCA 90 bp | GAGGTTGCAAGCCCAGTTATAGGTACTGGAGTTCAGAAGATTGTTAGGATTCTACACATTGTAGGACTTTaGCTGACAACCAGGTCTAGG | + |
|
Preference number: 4 (lower is better) Translates to: EVASPVIGTGVQKIVRILHIVGL*LTTRSR Trigger: CCTAGACCTGGTTGTCAGCCAAAGTCCTACAATGTG...TAGAATCCTAACAATCTTCTGAACTCCAGTACCTATAACTGGGCTTGCAACCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000306271.5 ENST00000573871.1 |
||