RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KRT78 (Homo sapiens)

Ensembl gene IDs: ENSG00000170423

Ensembl transcript IDs: ENST00000304620.5, ENST00000359499.8, ENST00000547920.1, ENST00000551581.1

Found 249 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCCCCCAGGCACAAGCTGAGCACATCCTCATCCTGGATGCAGGAGTaGCAGGCTAATAGAGAAGCTGAGTCCCTTACCAGAGCCAGACAG +
Preference number: 1 (lower is better)
Translates to: APRHKLSTSSSWMQE*QANREAESLTRARQ
Trigger: CTGTCTGGCTCTGGTAAGGGACTCAGCTTCTCTATTAGCCTGGCACTCCTGCATCCAGGATGAGGATGTGCTCAGCTTGTGCCTGGGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR CCA 90 bp ATGGATGTCTTCAGACTCGACTCAACTGTCTTCTTCAGGATGGTGTaGCAGCTGGAGCCAGCGCTGGAGCCAGACACAGAGCAGGAATCC +
Preference number: 1 (lower is better)
Translates to: MDVFRLDSTVFFRMV*QLEPALEPDTEQES
Trigger: GGATTCCTGCTCTGTGTCTGGCTCCAGCGCTGGCTCCAGCTGCCACACCATCCTGAAGAAGACAGTTGAGTCGAGTCTGAAGACATCCAT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000547920.1
3UTR CCA 90 bp GTCTGGACACAGATATGCCACAATTGCCTTCCGAGGAGAGGAAGCTaGGGAGCCACACAGCTTTTGTTTTGCTGGGTGAGGTGTGCAAGC +
Preference number: 1 (lower is better)
Translates to: VWTQICHNCLPRRGS*GATQLLFCWVRCAS
Trigger: GCTTGCACACCTCACCCAGCAAAACAAAAGCTGTGTGGCTCCCCAGCTTCCTCTCCTCGGAAGGCAATTGTGGCATATCTGTGTCCAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR CCA 90 bp TCTTCAGACTCGACTCAACTGTCTTCTTCAGGATGGTGTGGCAGCTaGAGCCAGCGCTGGAGCCAGACACAGAGCAGGAATCCAAAACAG +
Preference number: 1 (lower is better)
Translates to: SSDSTQLSSSGWCGS*SQRWSQTQSRNPKQ
Trigger: CTGTTTTGGATTCCTGCTCTGTGTCTGGCTCCAGCGCTGGCTCCAGCTGCCACACCATCCTGAAGAAGACAGTTGAGTCGAGTCTGAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000547920.1
3UTR TCA 90 bp TGCAAGCACTTAGAGCATTCAGAACAGCAGGAGGGGAGACTTTATTaGTTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAG +
Preference number: 1 (lower is better)
Translates to: CKHLEHSEQQEGRLY*FLQHPLWAGLGCGQ
Trigger: CTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATCAATAAAGTCTCCCCTCCTGCTGTTCTGAATGCTCTAAGTGCTTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR CCA 90 bp GATAGAGTGGCTGGGATGTGGAGTGAGATACCAATAGAACACGTCTaGACACAGATATGCCACAATTGCCTTCCGAGGAGAGGAAGCTGG +
Preference number: 1 (lower is better)
Translates to: DRVAGMWSEIPIEHV*TQICHNCLPRRGSW
Trigger: CCAGCTTCCTCTCCTCGGAAGGCAATTGTGGCATATCTGTGTCCAGACGTGTTCTATTGGTATCTCACTCCACATCCCAGCCACTCTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR GCA 90 bp CCTCACCGGCTCTGGTCTCCTTCACACAAAGCTGAAAAGCCTTCTTaGATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAGGTCTG +
Preference number: 1 (lower is better)
Translates to: PHRLWSPSHKAEKPS*IIWMERFMNLRKGL
Trigger: CAGACCTTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGCTTTGTGTGAAGGAGACCAGAGCCGGTGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR CCA 90 bp CTCTGGTCTCCTTCACACAAAGCTGAAAAGCCTTCTTGCATAATTTaGATGGAGCGATTCATGAATCTGAGGAAAGGTCTGCCCTCCCTC +
Preference number: 1 (lower is better)
Translates to: LWSPSHKAEKPSCII*MERFMNLRKGLPSL
Trigger: GAGGGAGGGCAGACCTTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGCTTTGTGTGAAGGAGACCAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR TCA 90 bp ATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCACACAAAGCTaGAAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCT +
Preference number: 1 (lower is better)
Translates to: IQATSSPALVSFTQS*KAFLHNLDGAIHES
Trigger: AGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGCTTTGTGTGAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CCA 90 bp GATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGACGCTGTGGGCTGGCTTaGGCTGTGGGCAGCGGACAC +
Preference number: 2 (lower is better)
Translates to: DFCSIRCGLAWAVGSGHGRCGLA*AVGSGH
Trigger: GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCG...TCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
3UTR-3UTR CCA 90 bp TTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGCATCCGCTGTGGGCTaGCTTGGGCTGTGGGCAGCG +
Preference number: 2 (lower is better)
Translates to: FCSIRCGLAWAVGSGHGVASAVG*LGLWAA
Trigger: CGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGC...AACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
3UTR-3UTR CCA 90 bp GATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGCATCCGCTGTGGGCTaGCTTGGGCTGTGGGCAGCG +
Preference number: 2 (lower is better)
Translates to: DFCSIRCGLAWAVGSGHGASAVG*LGLWAA
Trigger: CGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGC...TCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
3UTR-3UTR CCA 90 bp TTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGATGGTGTGGCAGCTaGAGCCAGCGCTGGAGCCAG +
Preference number: 2 (lower is better)
Translates to: FCSIRCGLAWAVGSGHGVGWCGS*SQRWSQ
Trigger: CTGGCTCCAGCGCTGGCTCCAGCTGCCACACCATCC...AACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000547920.1
3UTR-3UTR CCA 90 bp ATTGATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACCGCTGTGGGCTGGCTTaGGCTGTGGGCAGCGGACAC +
Preference number: 2 (lower is better)
Translates to: IDFCSIRCGLAWAVGSGHRCGLA*AVGSGH
Trigger: GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCG...GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATCAAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
3UTR-3UTR CCA 90 bp TGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTGCTGGGGGGCTGGCTTGGGCTGTaGGCAGCGGACACGGAGTTG +
Preference number: 2 (lower is better)
Translates to: WKARMGKEQLQAPMRLLGGWLGL*AADTEL
Trigger: CAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCC...CCCCAGCAGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCA
62% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CCA 90 bp ATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGCTCCAGTCACAATGCTaGTGCAGCAGGACCCAGGGC +
Preference number: 2 (lower is better)
Translates to: IFAASAVGWLGLWAADTELQSQC*CSRTQG
Trigger: GCCCTGGGTCCTGCTGCACCAGCATTGTGACTGGAG...CTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000547920.1
3UTR-3UTR GCA 90 bp ATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGAGCCTCCAGTCACAATaGTGGTGCAGCAGGACCCAG +
Preference number: 2 (lower is better)
Translates to: IFAASAVGWLGLWAADTESLQSQ*WCSRTQ
Trigger: CTGGGTCCTGCTGCACCAGCATTGTGACTGGAGGCT...CTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000547920.1
3UTR-3UTR CCA 90 bp AGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCACACAACGCTGTGGGCTGGCTTaGGCTGTGGGCAGCGGACAC +
Preference number: 2 (lower is better)
Translates to: SRAGIQATSSPALVSFTQRCGLA*AVGSGH
Trigger: GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCG...TTGTGTGAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CCA 90 bp ATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGCCGAGGAGAGGAAGCTaGGGAGCCACACAGCTTTTG +
Preference number: 2 (lower is better)
Translates to: IFAASAVGWLGLWAADTEPRRGS*GATQLL
Trigger: CAAAAGCTGTGTGGCTCCCCAGCTTCCTCTCCTCGG...CTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CCA 90 bp GATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGATTCTTCAGGATGGTGTaGCAGCTGGAGCCAGCGCTG +
Preference number: 2 (lower is better)
Translates to: DFCSIRCGLAWAVGSGHGFFRMV*QLEPAL
Trigger: CAGCGCTGGCTCCAGCTGCCACACCATCCTGAAGAA...TCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000547920.1
3UTR-3UTR GCA 90 bp ATTGATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACCAGTCACAATGCTGGTaGAGCAGGACCCAGGGCTGC +
Preference number: 2 (lower is better)
Translates to: IDFCSIRCGLAWAVGSGHQSQCW*SRTQGC
Trigger: GCAGCCCTGGGTCCTGCTGCACCAGCATTGTGACTG...GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATCAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000547920.1
3UTR-3UTR CCA 90 bp AGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCACACAAGGCTGGCTTGGGCTGTaGGCAGCGGACACGGAGTTG +
Preference number: 2 (lower is better)
Translates to: SRAGIQATSSPALVSFTQGWLGL*AADTEL
Trigger: CAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCC...TTGTGTGAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CCA 90 bp ATTGATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACCCGAGGAGAGGAAGCTaGGGAGCCACACAGCTTTTG +
Preference number: 2 (lower is better)
Translates to: IDFCSIRCGLAWAVGSGHPRRGS*GATQLL
Trigger: CAAAAGCTGTGTGGCTCCCCAGCTTCCTCTCCTCGG...GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATCAAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CCA 90 bp ATTGATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACTGTTCAGGAAGGAGGTaGCTGCTGGGTCGCTCAGTA +
Preference number: 2 (lower is better)
Translates to: IDFCSIRCGLAWAVGSGHCSGRR*LLGRSV
Trigger: TACTGAGCGACCCAGCAGCCACCTCCTTCCTGAACA...GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATCAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000547920.1
3UTR-3UTR CCA 90 bp AGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGCTGGGATGTGGATTGCAGCATCCGCTGTaGGCTGGCTTGGGCTGTGGG +
Preference number: 2 (lower is better)
Translates to: RNTLESLKDPLIEWLGCGLQHPL*AGLGCG
Trigger: CCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAA...TCCACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR TCA 90 bp TTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTTTTTGTTTTGCTGGGTaGGGTGTGCAAGCACTTAGA +
Preference number: 2 (lower is better)
Translates to: FCSIRCGLAWAVGSGHGVFCFAG*GVQALR
Trigger: TCTAAGTGCTTGCACACCTCACCCAGCAAAACAAAA...AACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR CAA 90 bp GAGTTGTGGGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGCTaGAAGGATCCCTTGATAGAGTGGCTGGGATGTGGAGTGAGATAC +
Preference number: 2 (lower is better)
Translates to: ELWEMEGTPRNTLES*KDPLIEWLGCGVRY
Trigger: GTATCTCACTCCACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCCCACAACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR TCA 90 bp AGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCACACAAGGTAGGGGCAGAGTTTaGACCCCAATCTCCATCAGA +
Preference number: 2 (lower is better)
Translates to: SRAGIQATSSPALVSFTQGRGRV*TPISIR
Trigger: TCTGATGGAGATTGGGGTTCAAACTCTGCCCCTACC...TTGTGTGAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR TCA 90 bp GGAAACAGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCTGCCCAAGGATAAGATaGGAGCCAACAGATAAGGGG +
Preference number: 2 (lower is better)
Translates to: GNSRAGIQATSSPALVSFCPRIR*EPTDKG
Trigger: CCCCTTATCTGTTGGCTCTCATCTTATCCTTGGGCA...GAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCTGTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR GCA 90 bp ATTGATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACTTGCTGGGTGAGGTGTaGAAGCACTTAGAGCATTCA +
Preference number: 2 (lower is better)
Translates to: IDFCSIRCGLAWAVGSGHLLGEV*KHLEHS
Trigger: TGAATGCTCTAAGTGCTTGCACACCTCACCCAGCAA...GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATCAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CCA 90 bp TGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTGCTGGGGCAGCTTTTGTTTTGCTaGGTGAGGTGTGCAAGCACT +
Preference number: 2 (lower is better)
Translates to: WKARMGKEQLQAPMRLLGQLLFC*VRCAST
Trigger: AGTGCTTGCACACCTCACCCAGCAAAACAAAAGCTG...CCCCAGCAGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR CAA 90 bp GTGCAAGCACTTAGAGCATTCAGAACAGCAGGAGGGGAGACTTTATaGATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCA +
Preference number: 2 (lower is better)
Translates to: VQALRAFRTAGGETL*IFAASAVGWLGLWA
Trigger: TGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATCAATAAAGTCTCCCCTCCTGCTGTTCTGAATGCTCTAAGTGCTTGCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR TCA 90 bp TGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTGCTGGGGCAGTTGATGAGGAAGTaGGCTACAAGCACAGCTAAA +
Preference number: 2 (lower is better)
Translates to: WKARMGKEQLQAPMRLLGQLMRK*ATSTAK
Trigger: TTTAGCTGTGCTTGTAGCTCACTTCCTCATCAACTG...CCCCAGCAGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR GCA 90 bp AGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCACACAAGTCTGGACACAGATATaGCACAATTGCCTTCCGAGG +
Preference number: 2 (lower is better)
Translates to: SRAGIQATSSPALVSFTQVWTQI*HNCLPR
Trigger: CCTCGGAAGGCAATTGTGGCATATCTGTGTCCAGAC...TTGTGTGAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR GCA 90 bp AGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCACACAATTGCTGGGTGAGGTGTaGAAGCACTTAGAGCATTCA +
Preference number: 2 (lower is better)
Translates to: SRAGIQATSSPALVSFTQLLGEV*KHLEHS
Trigger: TGAATGCTCTAAGTGCTTGCACACCTCACCCAGCAA...TTGTGTGAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR GCA 90 bp GAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGACACAGCTTTTGTTTTaGTGGGTGAGGTGTGCAAGC +
Preference number: 2 (lower is better)
Translates to: EGTPRNTLESLKDPLIEWTQLLF*WVRCAS
Trigger: GCTTGCACACCTCACCCAGCAAAACAAAAGCTGTGT...CCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR GCA 90 bp GATGGAGCGATTCATGAATCTGAGGAAAGGTCTGCCCTCCCTCTAAAGCAAGGACGTAGTGTGACCTCCTaGAGCCCAGACTATGGAGTT +
Preference number: 2 (lower is better)
Translates to: DGAIHESEERSALPLKQGRSVTS*SPDYGV
Trigger: AACTCCATAGTCTGGGCTGCAGGAGGTCACACTACG...TCCTTGCTTTAGAGGGAGGGCAGACCTTTCCTCAGATTCATGAATCGCTCCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CCA 90 bp AAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAAGGAACACACTGGAGCAGCTTTTGTTTTGCTaGGTGAGGTGTGCAAGCACT +
Preference number: 2 (lower is better)
Translates to: KTSVELWEMEGTPRNTLEQLLFC*VRCAST
Trigger: AGTGCTTGCACACCTCACCCAGCAAAACAAAAGCTG...CTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR GCA 90 bp AGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCACACAAAGGAGAAAATTTTGGTaGACAGTCAGGAAGAAGGAG +
Preference number: 2 (lower is better)
Translates to: SRAGIQATSSPALVSFTQRRKFW*TVRKKE
Trigger: CTCCTTCTTCCTGACTGTGCACCAAAATTTTCTCCT...TTGTGTGAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CCA 90 bp GATGGAGCGATTCATGAATCTGAGGAAAGGTCTGCCCTCCCTCTAAAGCAAGGAGATCCCTTGATAGAGTaGCTGGGATGTGGAGTGAGA +
Preference number: 2 (lower is better)
Translates to: DGAIHESEERSALPLKQGDPLIE*LGCGVR
Trigger: TCTCACTCCACATCCCAGCCACTCTATCAAGGGATC...TCCTTGCTTTAGAGGGAGGGCAGACCTTTCCTCAGATTCATGAATCGCTCCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR TCA 90 bp AAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAGGTCTTCCTGGCACCCCACCTaGTTCCCACACTCCTGGCTT +
Preference number: 2 (lower is better)
Translates to: KAFLHNLDGAIHESEERSSWHPT*FPHSWL
Trigger: AAGCCAGGAGTGTGGGAATCAGGTGGGGTGCCAGGA...AGACCTTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR TCA 90 bp GCTGAAAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAATATGGAGTTTGGGGTTaGGCCAGGTCCCCCACCTGG +
Preference number: 2 (lower is better)
Translates to: AEKPSCIIWMERFMNLRKYGVWG*ARSPTW
Trigger: CCAGGTGGGGGACCTGGCTCAACCCCAAACTCCATA...TTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CCA 90 bp GCTGAAAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAACTGCAGCCCAGACTATaGAGTTTGGGGTTGAGCCAG +
Preference number: 2 (lower is better)
Translates to: AEKPSCIIWMERFMNLRKLQPRL*SLGLSQ
Trigger: CTGGCTCAACCCCAAACTCCATAGTCTGGGCTGCAG...TTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR TCA 90 bp AATTTAATTGAACTACCTTGGATGAATTTAGTTTCCTTCTGGGATCCTAGTGGCGGTAGGGGCAGAGTTTaGACCCCAATCTCCATCAGA +
Preference number: 2 (lower is better)
Translates to: NLIELPWMNLVSFWDPSGGRGRV*TPISIR
Trigger: TCTGATGGAGATTGGGGTTCAAACTCTGCCCCTACC...GCCACTAGGATCCCAGAAGGAAACTAAATTCATCCAAGGTAGTTCAATTAAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR GCA 90 bp AAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAGGTCTACACAGCTTTTGTTTTaGTGGGTGAGGTGTGCAAGC +
Preference number: 2 (lower is better)
Translates to: KAFLHNLDGAIHESEERSTQLLF*WVRCAS
Trigger: GCTTGCACACCTCACCCAGCAAAACAAAAGCTGTGT...AGACCTTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR TCA 90 bp AAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAGGTCTTTTTGTTTTGCTGGGTaGGGTGTGCAAGCACTTAGA +
Preference number: 2 (lower is better)
Translates to: KAFLHNLDGAIHESEERSFCFAG*GVQALR
Trigger: TCTAAGTGCTTGCACACCTCACCCAGCAAAACAAAA...AGACCTTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CCA 90 bp AATTTAATTGAACTACCTTGGATGAATTTAGTTTCCTTCTGGGATCCTAGTGGCTCTGGAAAGCGAGAATaGGGAAAGAGCAACTGCAGG +
Preference number: 2 (lower is better)
Translates to: NLIELPWMNLVSFWDPSGSGKRE*GKSNCR
Trigger: CCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCAGA...GCCACTAGGATCCCAGAAGGAAACTAAATTCATCCAAGGTAGTTCAATTAAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CCA 90 bp AATTTAATTGAACTACCTTGGATGAATTTAGTTTCCTTCTGGGATCCTAGTGGCCAGCTAAAACATCAGTaGAGTTGTGGGAGATGGAGG +
Preference number: 2 (lower is better)
Translates to: NLIELPWMNLVSFWDPSGQLKHQ*SCGRWR
Trigger: CCTCCATCTCCCACAACTCCACTGATGTTTTAGCTG...GCCACTAGGATCCCAGAAGGAAACTAAATTCATCCAAGGTAGTTCAATTAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CAA 90 bp ATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGGACACGGAGTTGGCCTaGCAGAGCCGGCTGATGGGG +
Preference number: 3 (lower is better)
Translates to: IFAASAVGWLGLWAADTEDTELA*QSRLMG
Trigger: CCCCATCAGCCGGCTCTGCAAGGCCAACTCCGTGTC...CTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
3UTR-3UTR CAA 90 bp GAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGGCAGCGGACACGGAGTaGGCCTTGCAGAGCCGGCTG +
Preference number: 3 (lower is better)
Translates to: EGTPRNTLESLKDPLIEWAADTE*ALQSRL
Trigger: CAGCCGGCTCTGCAAGGCCAACTCCGTGTCCGCTGC...CCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CAA 90 bp AGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGCTGGGATGTGGAGACACGGAGTTGGCCTaGCAGAGCCGGCTGATGGGG +
Preference number: 3 (lower is better)
Translates to: RNTLESLKDPLIEWLGCGDTELA*QSRLMG
Trigger: CCCCATCAGCCGGCTCTGCAAGGCCAACTCCGTGTC...TCCACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CAA 90 bp TTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTCACACAGCTTTTGTTTaGCTGGGTGAGGTGTGCAAG +
Preference number: 3 (lower is better)
Translates to: FCSIRCGLAWAVGSGHGVHTAFV*LGEVCK
Trigger: CTTGCACACCTCACCCAGCAAAACAAAAGCTGTGTG...AACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR TCA 72 bp GTCTGCCCTCCCTCTAAAGCAAGGAGAGGCGTAGTGTaGCCTCCTGCAGCCCAGACTATGGAGTTTGGGGTT +
Preference number: 3 (lower is better)
Translates to: VCPPSKARRGVV*PPAAQTMEFGV
Trigger: AACCCCAAACTCCATAGTCTGGGCTGCAGGAGGTCACACTACGCCTCTCCTTGCTTTAGAGGGAGGGCAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR CCA 72 bp TCGACTCAACTGTCTTCTTCAGGATGGTGTGGCAGCTaGAGCCAGCGCTGGAGCCAGACACAGAGCAGGAAT +
Preference number: 3 (lower is better)
Translates to: STQLSSSGWCGS*SQRWSQTQSRN
Trigger: ATTCCTGCTCTGTGTCTGGCTCCAGCGCTGGCTCCAGCTGCCACACCATCCTGAAGAAGACAGTTGAGTCGA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000547920.1
3UTR GCA 72 bp GGGAGCCACACAGCTTTTGTTTTGCTGGGTGAGGTGTaGAAGCACTTAGAGCATTCAGAACAGCAGGAGGGG +
Preference number: 3 (lower is better)
Translates to: GSHTAFVLLGEV*KHLEHSEQQEG
Trigger: CCCCTCCTGCTGTTCTGAATGCTCTAAGTGCTTGCACACCTCACCCAGCAAAACAAAAGCTGTGTGGCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR CCA 72 bp GCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTaGTCTCCTTCACACAAAGCTGAAAAGCCTTCTTGC +
Preference number: 3 (lower is better)
Translates to: AELGFKPHPHRL*SPSHKAEKPSC
Trigger: GCAAGAAGGCTTTTCAGCTTTGTGTGAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CAA 90 bp GCTACAAGCACAGCTAAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAGGAGCCACACAGCTTTaGTTTTGCTGGGTGAGGTGT +
Preference number: 3 (lower is better)
Translates to: ATSTAKTSVELWEMEGTPGATQL*FCWVRC
Trigger: ACACCTCACCCAGCAAAACAAAAGCTGTGTGGCTCC...TGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTTAGCTGTGCTTGTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CAA 90 bp CTGGGTCTGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTGCCTCATGTTCACACTaGCCCAAGGATAAGATGAGA +
Preference number: 3 (lower is better)
Translates to: LGLESENGERATAGTHEAASCSH*PKDKMR
Trigger: TCTCATCTTATCCTTGGGCAAGTGTGAACATGAGGC...AGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCAGACCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CAA 90 bp GCTACAAGCACAGCTAAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAAGCTTGAAGGATCCCTaGATAGAGTGGCTGGGATGT +
Preference number: 3 (lower is better)
Translates to: ATSTAKTSVELWEMEGTPSLKDP*IEWLGC
Trigger: ACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCT...TGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTTAGCTGTGCTTGTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CAA 90 bp AGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCACACAAAACACACTGGAGAGCTaGAAGGATCCCTTGATAGAG +
Preference number: 3 (lower is better)
Translates to: SRAGIQATSSPALVSFTQNTLES*KDPLIE
Trigger: CTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTT...TTGTGTGAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CAA 90 bp GCTGAAAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAGACACGGAGTTGGCCTaGCAGAGCCGGCTGATGGGG +
Preference number: 3 (lower is better)
Translates to: AEKPSCIIWMERFMNLRKDTELA*QSRLMG
Trigger: CCCCATCAGCCGGCTCTGCAAGGCCAACTCCGTGTC...TTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CAA 90 bp AGAGTGGCTGGGATGTGGAGTGAGATACCAATAGAACACGTCTGGACACAGATAGGAGCCACACAGCTTTaGTTTTGCTGGGTGAGGTGT +
Preference number: 3 (lower is better)
Translates to: RVAGMWSEIPIEHVWTQIGATQL*FCWVRC
Trigger: ACACCTCACCCAGCAAAACAAAAGCTGTGTGGCTCC...TATCTGTGTCCAGACGTGTTCTATTGGTATCTCACTCCACATCCCAGCCACTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CAA 90 bp GTAGGTGATGGATGTCTTCAGACTCGACTCAACTGTCTTCTTCAGGATGGTGTGGAGCCCAGAATGATGTaGGAGCCTCCAGTCACAATG +
Preference number: 3 (lower is better)
Translates to: VGDGCLQTRLNCLLQDGVEPRMM*EPPVTM
Trigger: CATTGTGACTGGAGGCTCCAACATCATTCTGGGCTC...CACACCATCCTGAAGAAGACAGTTGAGTCGAGTCTGAAGACATCCATCACCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000547920.1
3UTR TCA 72 bp TTCCAGCCTCATGTTCACACTTGCCCAAGGATAAGATaGGAGCCAACAGATAAGGGGGTAGGGGCAGAGTTT +
Preference number: 3 (lower is better)
Translates to: FQPHVHTCPRIR*EPTDKGVGAEF
Trigger: AAACTCTGCCCCTACCCCCTTATCTGTTGGCTCTCATCTTATCCTTGGGCAAGTGTGAACATGAGGCTGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR CCA 72 bp GCTGGGATGTGGAGTGAGATACCAATAGAACACGTCTaGACACAGATATGCCACAATTGCCTTCCGAGGAGA +
Preference number: 3 (lower is better)
Translates to: AGMWSEIPIEHV*TQICHNCLPRR
Trigger: TCTCCTCGGAAGGCAATTGTGGCATATCTGTGTCCAGACGTGTTCTATTGGTATCTCACTCCACATCCCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CAA 90 bp AAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAGGTCTCTATGGAGTTTGGGGTaGAGCCAGGTCCCCCACCTG +
Preference number: 3 (lower is better)
Translates to: KAFLHNLDGAIHESEERSLWSLG*SQVPHL
Trigger: CAGGTGGGGGACCTGGCTCAACCCCAAACTCCATAG...AGACCTTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR TCA 72 bp ACATCCTCACCGGCTCTGGTCTCCTTCACACAAAGCTaGAAAGCCTTCTTGCATAATTTGGATGGAGCGATT +
Preference number: 3 (lower is better)
Translates to: TSSPALVSFTQS*KAFLHNLDGAI
Trigger: AATCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGCTTTGTGTGAAGGAGACCAGAGCCGGTGAGGATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CAA 90 bp AAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAGGTCTAAAACATCAGTGGAGTaGTGGGAGATGGAGGGCACC +
Preference number: 3 (lower is better)
Translates to: KAFLHNLDGAIHESEERSKTSVE*WEMEGT
Trigger: GGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT...AGACCTTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CAA 90 bp GCTGAAAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAAGCTTGAAGGATCCCTaGATAGAGTGGCTGGGATGT +
Preference number: 3 (lower is better)
Translates to: AEKPSCIIWMERFMNLRKSLKDP*IEWLGC
Trigger: ACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCT...TTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CAA 90 bp AATTTAATTGAACTACCTTGGATGAATTTAGTTTCCTTCTGGGATCCTAGTGGCGCCTCATGTTCACACTaGCCCAAGGATAAGATGAGA +
Preference number: 3 (lower is better)
Translates to: NLIELPWMNLVSFWDPSGASCSH*PKDKMR
Trigger: TCTCATCTTATCCTTGGGCAAGTGTGAACATGAGGC...GCCACTAGGATCCCAGAAGGAAACTAAATTCATCCAAGGTAGTTCAATTAAATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR-3UTR CAA 90 bp AATTTAATTGAACTACCTTGGATGAATTTAGTTTCCTTCTGGGATCCTAGTGGCGCCTTCTTGCATAATTaGGATGGAGCGATTCATGAA +
Preference number: 3 (lower is better)
Translates to: NLIELPWMNLVSFWDPSGAFLHN*DGAIHE
Trigger: TTCATGAATCGCTCCATCCAAATTATGCAAGAAGGC...GCCACTAGGATCCCAGAAGGAAACTAAATTCATCCAAGGTAGTTCAATTAAATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp CAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTGCATCCGCTGTGGGCTaGCTTGGGCTGTGGGCAGCG +
Preference number: 4 (lower is better)
Translates to: QHPLWAGLGCGQRTRSWPASAVG*LGLWAA
Trigger: CGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGC...AGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR GCA 90 bp CAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTAGCCGGGCCAGGTTCTaGTTGGCCATCCTCAGAGCA +
Preference number: 4 (lower is better)
Translates to: QHPLWAGLGCGQRTRSWPSRARF*LAILRA
Trigger: TGCTCTGAGGATGGCCAAGCAGAACCTGGCCCGGCT...AGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp CAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTCAGTCACAATGCTGGTaGAGCAGGACCCAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: QHPLWAGLGCGQRTRSWPQSQCW*SRTQGC
Trigger: GCAGCCCTGGGTCCTGCTGCACCAGCATTGTGACTG...AGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR CCA 90 bp ATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGGCATCCGCTGTGGGCTaGCTTGGGCTGTGGGCAGCG +
Preference number: 4 (lower is better)
Translates to: IFAASAVGWLGLWAADTEASAVG*LGLWAA
Trigger: CGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGC...CTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR TCA 90 bp AGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTTAGGAGAGGCGTAGTGTaGCCTCCTGCAGCCCAGACT +
Preference number: 4 (lower is better)
Translates to: SIRCGLAWAVGSGHGVGLRRGVV*PPAAQT
Trigger: AGTCTGGGCTGCAGGAGGTCACACTACGCCTCTCCT...AAGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp AGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTTTCAGTGATGGCGGCCTaGAGGCTGGCGTTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: SIRCGLAWAVGSGHGVGLSVMAA*RLAFCF
Trigger: GAAGCAGAACGCCAGCCTGCAGGCCGCCATCACTGA...AAGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp TTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCTCCAGGCCCTGCTaGCTGCCACTCAACCCCTGT +
Preference number: 4 (lower is better)
Translates to: FCSIRCGLAWAVGSGHGVGSRPC*LPLNPC
Trigger: ACAGGGGTTGAGTGGCAGCCAGCAGGGCCTGGAGCC...AACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTTCTCCAGTCACAATGCTaGTGCAGCAGGACCCAGGGC +
Preference number: 4 (lower is better)
Translates to: SIRCGLAWAVGSGHGVGLLQSQC*CSRTQG
Trigger: GCCCTGGGTCCTGCTGCACCAGCATTGTGACTGGAG...AAGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR CCA 90 bp GATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGGATGGTGTGGCAGCTaGAGCCAGCGCTGGAGCCAG +
Preference number: 4 (lower is better)
Translates to: DFCSIRCGLAWAVGSGHGGWCGS*SQRWSQ
Trigger: CTGGCTCCAGCGCTGGCTCCAGCTGCCACACCATCC...TCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR CCA 90 bp ATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGGGATGGTGTGGCAGCTaGAGCCAGCGCTGGAGCCAG +
Preference number: 4 (lower is better)
Translates to: IFAASAVGWLGLWAADTEGWCGS*SQRWSQ
Trigger: CTGGCTCCAGCGCTGGCTCCAGCTGCCACACCATCC...CTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR TCA 90 bp GATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGCTCCAGCTGCTTCCTaGGCTGATCCAGGCAGGCCT +
Preference number: 4 (lower is better)
Translates to: DFCSIRCGLAWAVGSGHGAPAAS*ADPGRP
Trigger: AGGCCTGCCTGGATCAGCTCAGGAAGCAGCTGGAGC...TCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp CAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTCTCAACCCCTGTTGCTaGAGCAGATGCCACTTCGTC +
Preference number: 4 (lower is better)
Translates to: QHPLWAGLGCGQRTRSWPLNPCC*SRCHFV
Trigger: GACGAAGTGGCATCTGCTGCAGCAACAGGGGTTGAG...AGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp TGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTGCTGGGGGACGTGTCGCTGGCCTaGGTCTGGAGCTGGCCCAGC +
Preference number: 4 (lower is better)
Translates to: WKARMGKEQLQAPMRLLGDVSLA*VWSWPS
Trigger: GCTGGGCCAGCTCCAGACCCAGGCCAGCGACACGTC...CCCCAGCAGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp CAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTTGTTCAGGAAGGAGGTaGCTGCTGGGTCGCTCAGTA +
Preference number: 4 (lower is better)
Translates to: QHPLWAGLGCGQRTRSWPCSGRR*LLGRSV
Trigger: TACTGAGCGACCCAGCAGCCACCTCCTTCCTGAACA...AGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR CCA 90 bp GATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGATTGCAGCATCCGCTGTaGGCTGGCTTGGGCTGTGGG +
Preference number: 4 (lower is better)
Translates to: DFCSIRCGLAWAVGSGHGLQHPL*AGLGCG
Trigger: CCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAA...TCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR TCA 90 bp ATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTATGGAGTTTGGGGTTaGGCCAGGTCCCCCACCTGG +
Preference number: 4 (lower is better)
Translates to: IFAASAVGWLGLWAADTEYGVWG*ARSPTW
Trigger: CCAGGTGGGGGACCTGGCTCAACCCCAAACTCCATA...CTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp CAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTTGCAGGCTGGCGTTCTaGTTCTTGAGGTTCTCAGTC +
Preference number: 4 (lower is better)
Translates to: QHPLWAGLGCGQRTRSWPCRLAF*FLRFSV
Trigger: GACTGAGAACCTCAAGAAGCAGAACGCCAGCCTGCA...AGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp TTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTAGCAGGACCCAGGGCTaGCTTTCCCACTACCGAGTC +
Preference number: 4 (lower is better)
Translates to: FCSIRCGLAWAVGSGHGVSRTQG*LSHYRV
Trigger: GACTCGGTAGTGGGAAAGGCAGCCCTGGGTCCTGCT...AACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR GCA 90 bp GATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAAGCAGGACCCAGGGCTaGCTTTCCCACTACCGAGTC +
Preference number: 4 (lower is better)
Translates to: DFCSIRCGLAWAVGSGHGSRTQG*LSHYRV
Trigger: GACTCGGTAGTGGGAAAGGCAGCCCTGGGTCCTGCT...TCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR CCA 90 bp GGAAACAGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCGCGCTGAAGCCCCTCTaGGCCCGGCATGGGGAGAGA +
Preference number: 4 (lower is better)
Translates to: GNSRAGIQATSSPALVSFALKPL*ARHGER
Trigger: TCTCTCCCCATGCCGGGCCCAGAGGGGCTTCAGCGC...GAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCTGTTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000304620.5
CDS-3UTR CCA 90 bp GGAAACAGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCGACGTGTCGCTGGCCTaGGTCTGGAGCTGGCCCAGC +
Preference number: 4 (lower is better)
Translates to: GNSRAGIQATSSPALVSFDVSLA*VWSWPS
Trigger: GCTGGGCCAGCTCCAGACCCAGGCCAGCGACACGTC...GAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCTGTTTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp GATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGACTCCAGTCACAATGCTaGTGCAGCAGGACCCAGGGC +
Preference number: 4 (lower is better)
Translates to: DFCSIRCGLAWAVGSGHGLQSQC*CSRTQG
Trigger: GCCCTGGGTCCTGCTGCACCAGCATTGTGACTGGAG...TCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR CCA 90 bp AGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTTACATCAGTGGAGTTGTaGGAGATGGAGGGCACCCCA +
Preference number: 4 (lower is better)
Translates to: SIRCGLAWAVGSGHGVGLTSVEL*EMEGTP
Trigger: TGGGGTGCCCTCCATCTCCCACAACTCCACTGATGT...AAGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp GATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAAGTCGTTCTCAAGTGTaGCACGCCTGTGGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: DFCSIRCGLAWAVGSGHGSRSQV*HACGPP
Trigger: AGGAGGCCCACAGGCGTGCCACACTTGAGAACGACT...TCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp ATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTCTTCAGGATGGTGTaGCAGCTGGAGCCAGCGCTG +
Preference number: 4 (lower is better)
Translates to: IFAASAVGWLGLWAADTEFFRMV*QLEPAL
Trigger: CAGCGCTGGCTCCAGCTGCCACACCATCCTGAAGAA...CTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR CCA 90 bp TGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTGCTGGGGTTGCAGCATCCGCTGTaGGCTGGCTTGGGCTGTGGG +
Preference number: 4 (lower is better)
Translates to: WKARMGKEQLQAPMRLLGLQHPL*AGLGCG
Trigger: CCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAA...CCCCAGCAGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp ATTGATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACAGCAGGACCCAGGGCTaGCTTTCCCACTACCGAGTC +
Preference number: 4 (lower is better)
Translates to: IDFCSIRCGLAWAVGSGHSRTQG*LSHYRV
Trigger: GACTCGGTAGTGGGAAAGGCAGCCCTGGGTCCTGCT...GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATCAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR CCA 90 bp GATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGATTATACTCCTCCTCCTaGTCCCGGCAGGCCTTCAAC +
Preference number: 4 (lower is better)
Translates to: DFCSIRCGLAWAVGSGHGLYSSS*SRQAFN
Trigger: GTTGAAGGCCTGCCGGGACCAGGAGGAGGAGTATAA...TCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp TTCCCAGAGCCCAGAATGATGTTGGAGCCTCCAGTCACAATGCTGGTGCAGCAGGGCTGGCTTGGGCTGTaGGCAGCGGACACGGAGTTG +
Preference number: 4 (lower is better)
Translates to: FPEPRMMLEPPVTMLVQQGWLGL*AADTEL
Trigger: CAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCC...CTGCTGCACCAGCATTGTGACTGGAGGCTCCAACATCATTCTGGGCTCTGGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000547920.1
CDS-3UTR CCA 90 bp AAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAAGGAACACACTGGAGCGCTGTGGGCTGGCTTaGGCTGTGGGCAGCGGACAC +
Preference number: 4 (lower is better)
Translates to: KTSVELWEMEGTPRNTLERCGLA*AVGSGH
Trigger: GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCG...CTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp CTGGGTCTGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTTTGCAGCATCCGCTGTaGGCTGGCTTGGGCTGTGGG +
Preference number: 4 (lower is better)
Translates to: LGLESENGERATAGTHEALQHPL*AGLGCG
Trigger: CCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAA...AGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCAGACCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp AGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTTTCAGCAGATTCTGGTTaGTGGTCACTTCTTGGATGC +
Preference number: 4 (lower is better)
Translates to: SIRCGLAWAVGSGHGVGLSADSG*WSLLGC
Trigger: GCATCCAAGAAGTGACCATCAACCAGAATCTGCTGA...AAGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000304620.5
CDS-3UTR TCA 90 bp CAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTTTTTGTTTTGCTGGGTaGGGTGTGCAAGCACTTAGA +
Preference number: 4 (lower is better)
Translates to: QHPLWAGLGCGQRTRSWPFCFAG*GVQALR
Trigger: TCTAAGTGCTTGCACACCTCACCCAGCAAAACAAAA...AGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp ATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGGGTAGGGGCAGAGTTTaGACCCCAATCTCCATCAGA +
Preference number: 4 (lower is better)
Translates to: IFAASAVGWLGLWAADTEGRGRV*TPISIR
Trigger: TCTGATGGAGATTGGGGTTCAAACTCTGCCCCTACC...CTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp GGAAACAGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCAGCCGGGCCAGGTTCTaGTTGGCCATCCTCAGAGCA +
Preference number: 4 (lower is better)
Translates to: GNSRAGIQATSSPALVSFSRARF*LAILRA
Trigger: TGCTCTGAGGATGGCCAAGCAGAACCTGGCCCGGCT...GAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCTGTTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp TGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTGCTGGGGAGCCTCCAGTCACAATaGTGGTGCAGCAGGACCCAG +
Preference number: 4 (lower is better)
Translates to: WKARMGKEQLQAPMRLLGSLQSQ*WCSRTQ
Trigger: CTGGGTCCTGCTGCACCAGCATTGTGACTGGAGGCT...CCCCAGCAGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp AGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTTTTGCTGGGTGAGGTGTaGAAGCACTTAGAGCATTCA +
Preference number: 4 (lower is better)
Translates to: SIRCGLAWAVGSGHGVGLLLGEV*KHLEHS
Trigger: TGAATGCTCTAAGTGCTTGCACACCTCACCCAGCAA...AAGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp TTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTCGCACCACCTGGAACTaGGGATCGATCTCAATCTTC +
Preference number: 4 (lower is better)
Translates to: FCSIRCGLAWAVGSGHGVRTTWN*GSISIF
Trigger: GAAGATTGAGATCGATCCCCAGTTCCAGGTGGTGCG...AACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000304620.5
CDS-3UTR CCA 90 bp AAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAAGGAACACACTGGAGGGCTCCAGGCCCTGCTaGCTGCCACTCAACCCCTGT +
Preference number: 4 (lower is better)
Translates to: KTSVELWEMEGTPRNTLEGSRPC*LPLNPC
Trigger: ACAGGGGTTGAGTGGCAGCCAGCAGGGCCTGGAGCC...CTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTTCCTCCTCCTCATACTTaGACTTATACTCCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: SIRCGLAWAVGSGHGVGLPPPHT*TYTPPP
Trigger: AGGAGGAGGAGTATAAGTCCAAGTATGAGGAGGAGG...AAGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAAGGAACACACTGGAGGGATGGTGTGGCAGCTaGAGCCAGCGCTGGAGCCAG +
Preference number: 4 (lower is better)
Translates to: KTSVELWEMEGTPRNTLEGWCGS*SQRWSQ
Trigger: CTGGCTCCAGCGCTGGCTCCAGCTGCCACACCATCC...CTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAAGGAACACACTGGAGGGCTGGCTTGGGCTGTaGGCAGCGGACACGGAGTTG +
Preference number: 4 (lower is better)
Translates to: KTSVELWEMEGTPRNTLEGWLGL*AADTEL
Trigger: CAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCC...CTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp ACATCCTCATCCTGGATGCAGGAGTGCCAGGCTAATAGAGAAGCTGAGTCCCTTCGCTGTGGGCTGGCTTaGGCTGTGGGCAGCGGACAC +
Preference number: 4 (lower is better)
Translates to: TSSSWMQECQANREAESLRCGLA*AVGSGH
Trigger: GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCG...AAGGGACTCAGCTTCTCTATTAGCCTGGCACTCCTGCATCCAGGATGAGGATGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp AGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCACACAACGTTCTCCCTGGAGCTaGTCCAGCTGCTTCCTGAGC +
Preference number: 4 (lower is better)
Translates to: SRAGIQATSSPALVSFTQRSPWS*SSCFLS
Trigger: GCTCAGGAAGCAGCTGGAGCAGCTCCAGGGAGAACG...TTGTGTGAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp TGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTGCTGGGGTACCGAGTCCACAAGTaGTCCCCAAGCCTCCACCAA +
Preference number: 4 (lower is better)
Translates to: WKARMGKEQLQAPMRLLGYRVHK*SPSLHQ
Trigger: TTGGTGGAGGCTTGGGGAGCACTTGTGGACTCGGTA...CCCCAGCAGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp TGGAGCCAGCGCTGGAGCCAGACACAGAGCAGGAATCCAAAACAGGGTCCTTCCTACCGAGTCCACAAGTaGTCCCCAAGCCTCCACCAA +
Preference number: 4 (lower is better)
Translates to: WSQRWSQTQSRNPKQGPSYRVHK*SPSLHQ
Trigger: TTGGTGGAGGCTTGGGGAGCACTTGTGGACTCGGTA...GGAAGGACCCTGTTTTGGATTCCTGCTCTGTGTCTGGCTCCAGCGCTGGCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000547920.1
CDS-3UTR GCA 90 bp GATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGATCCTGGATGCAGGAGTaGCAGGCTAATAGAGAAGCT +
Preference number: 4 (lower is better)
Translates to: DFCSIRCGLAWAVGSGHGSWMQE*QANREA
Trigger: AGCTTCTCTATTAGCCTGGCACTCCTGCATCCAGGA...TCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp GATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGGGGTCAGCAGATTCTaGTTGATGGTCACTTCTTGG +
Preference number: 4 (lower is better)
Translates to: DFCSIRCGLAWAVGSGHGGVSRF*LMVTSW
Trigger: CCAAGAAGTGACCATCAACCAGAATCTGCTGACCCC...TCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000304620.5
CDS-3UTR CCA 90 bp ATTGATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACTTATACTCCTCCTCCTaGTCCCGGCAGGCCTTCAAC +
Preference number: 4 (lower is better)
Translates to: IDFCSIRCGLAWAVGSGHLYSSS*SRQAFN
Trigger: GTTGAAGGCCTGCCGGGACCAGGAGGAGGAGTATAA...GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATCAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp CTGGGTCTGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTGCCTGGGTCTGGAGCTaGCCCAGCTCTTCTTCATTC +
Preference number: 4 (lower is better)
Translates to: LGLESENGERATAGTHEAAWVWS*PSSSSF
Trigger: GAATGAAGAAGAGCTGGGCCAGCTCCAGACCCAGGC...AGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCAGACCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp ATTGATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACCTGTCTTCTTCAGGATaGTGTGGCAGCTGGAGCCAG +
Preference number: 4 (lower is better)
Translates to: IDFCSIRCGLAWAVGSGHLSSSG*CGSWSQ
Trigger: CTGGCTCCAGCTGCCACACCATCCTGAAGAAGACAG...GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATCAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR TCA 90 bp GATGGAGCGATTCATGAATCTGAGGAAAGGTCTGCCCTCCCTCTAAAGCAAGGAGCGAGCAGAACAGGCTaGGCGAGCGCTGAAGCCCCT +
Preference number: 4 (lower is better)
Translates to: DGAIHESEERSALPLKQGASRTG*ASAEAP
Trigger: AGGGGCTTCAGCGCTCGCTCAGCCTGTTCTGCTCGC...TCCTTGCTTTAGAGGGAGGGCAGACCTTTCCTCAGATTCATGAATCGCTCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000304620.5
CDS-3UTR TCA 90 bp AAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGGAGAGGCGTAGTGTaGCCTCCTGCAGCCCAGACT +
Preference number: 4 (lower is better)
Translates to: KTSVELWEMEGTPRNTLERRGVV*PPAAQT
Trigger: AGTCTGGGCTGCAGGAGGTCACACTACGCCTCTCCT...CTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp AGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGCTGGGATGTGGATGGTCACTTCTTGGATaGCCCCCGGAGGGCACAGGG +
Preference number: 4 (lower is better)
Translates to: RNTLESLKDPLIEWLGCGWSLLG*PPEGTG
Trigger: CCCTGTGCCCTCCGGGGGGCATCCAAGAAGTGACCA...TCCACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000304620.5
CDS-3UTR GCA 90 bp TGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTGCTGGGGCGTAGTGTGACCTCCTaGAGCCCAGACTATGGAGTT +
Preference number: 4 (lower is better)
Translates to: WKARMGKEQLQAPMRLLGRSVTS*SPDYGV
Trigger: AACTCCATAGTCTGGGCTGCAGGAGGTCACACTACG...CCCCAGCAGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp GGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATTGCGTCCGCACCACCTaGAACTGGGGATCGATCTCA +
Preference number: 4 (lower is better)
Translates to: GDGGHPKEHTGELEGSLDCVRTT*NWGSIS
Trigger: TGAGATCGATCCCCAGTTCCAGGTGGTGCGGACGCA...ATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000304620.5
CDS-3UTR CCA 90 bp ATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGCCTCCTCCTCATACTTaGACTTATACTCCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: IFAASAVGWLGLWAADTEPPPHT*TYTPPP
Trigger: AGGAGGAGGAGTATAAGTCCAAGTATGAGGAGGAGG...CTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp GAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGAGTGTGGCACGCCTGTaGGCCTCCTCCTCATACTTG +
Preference number: 4 (lower is better)
Translates to: EGTPRNTLESLKDPLIEWSVARL*ASSSYL
Trigger: CAAGTATGAGGAGGAGGCCCACAGGCGTGCCACACT...CCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAAGGAACACACTGGAGCTCCAGTCACAATGCTaGTGCAGCAGGACCCAGGGC +
Preference number: 4 (lower is better)
Translates to: KTSVELWEMEGTPRNTLELQSQC*CSRTQG
Trigger: GCCCTGGGTCCTGCTGCACCAGCATTGTGACTGGAG...CTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp GGAAACAGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCCTGTCTTCTTCAGGATaGTGTGGCAGCTGGAGCCAG +
Preference number: 4 (lower is better)
Translates to: GNSRAGIQATSSPALVSFLSSSG*CGSWSQ
Trigger: CTGGCTCCAGCTGCCACACCATCCTGAAGAAGACAG...GAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCTGTTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp AAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGCTGCTTCCTGAGCTaGTCCAGGCAGGCCTCAAAG +
Preference number: 4 (lower is better)
Translates to: KTSVELWEMEGTPRNTLESCFLS*SRQASK
Trigger: CTTTGAGGCCTGCCTGGATCAGCTCAGGAAGCAGCT...CTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp GGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGCTGGGCAGACACCTaGAGTTCCTGGTACTTGGTC +
Preference number: 4 (lower is better)
Translates to: GDGGHPKEHTGELEGSLDSWADT*SSWYLV
Trigger: GACCAAGTACCAGGAACTTCAGGTGTCTGCCCAGCT...ATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp TTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTATCTCTTGGTGTAGCTaGGAGATCTGGACTTTCGTT +
Preference number: 4 (lower is better)
Translates to: FCSIRCGLAWAVGSGHGVISWCS*EIWTFV
Trigger: AACGAAAGTCCAGATCTCTCAGCTACACCAAGAGAT...AACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp AGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGCTGGGATGTGGATATGGAGTTTGGGGTTaGGCCAGGTCCCCCACCTGG +
Preference number: 4 (lower is better)
Translates to: RNTLESLKDPLIEWLGCGYGVWG*ARSPTW
Trigger: CCAGGTGGGGGACCTGGCTCAACCCCAAACTCCATA...TCCACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp GAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGTCAGAGCCTCCAGCTTaGCCTCCAACTCCATCTTGC +
Preference number: 4 (lower is better)
Translates to: EGTPRNTLESLKDPLIEWSEPPA*PPTPSC
Trigger: GCAAGATGGAGTTGGAGGGCAAGCTGGAGGCTCTGA...CCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp GGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATTACCGAGTCCACAAGTaGTCCCCAAGCCTCCACCAA +
Preference number: 4 (lower is better)
Translates to: GDGGHPKEHTGELEGSLDYRVHK*SPSLHQ
Trigger: TTGGTGGAGGCTTGGGGAGCACTTGTGGACTCGGTA...ATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGCTGGGATGTGGAAGGGTTCTGATCTCCTaGGTCTCCTGCGTCCGCACC +
Preference number: 4 (lower is better)
Translates to: RNTLESLKDPLIEWLGCGRVLIS*VSCVRT
Trigger: GGTGCGGACGCAGGAGACCCAGGAGATCAGAACCCT...TCCACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000304620.5
CDS-3UTR CCA 90 bp AAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGTCGTTCTCAAGTGTaGCACGCCTGTGGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: KTSVELWEMEGTPRNTLESRSQV*HACGPP
Trigger: AGGAGGCCCACAGGCGTGCCACACTTGAGAACGACT...CTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp GGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATTGTTCAGGAAGGAGGTaGCTGCTGGGTCGCTCAGTA +
Preference number: 4 (lower is better)
Translates to: GDGGHPKEHTGELEGSLDCSGRR*LLGRSV
Trigger: TACTGAGCGACCCAGCAGCCACCTCCTTCCTGAACA...ATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp CTGGGTCTGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTCATCCTCACCGGCTCTaGTCTCCTTCACACAAAGCT +
Preference number: 4 (lower is better)
Translates to: LGLESENGERATAGTHEAHPHRL*SPSHKA
Trigger: AGCTTTGTGTGAAGGAGACCAGAGCCGGTGAGGATG...AGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCAGACCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR CAA 72 bp GAGATGGAGGGCACCCCAAGGAACACACTGGAGAGCTaGAAGGATCCCTTGATAGAGTGGCTGGGATGTGGA +
Preference number: 4 (lower is better)
Translates to: EMEGTPRNTLES*KDPLIEWLGCG
Trigger: TCCACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR CAA 72 bp TCCAAAACAGGGTCCTTCCCAGAGCCCAGAATGATGTaGGAGCCTCCAGTCACAATGCTGGTGCAGCAGGAC +
Preference number: 4 (lower is better)
Translates to: SKTGSFPEPRMM*EPPVTMLVQQD
Trigger: GTCCTGCTGCACCAGCATTGTGACTGGAGGCTCCAACATCATTCTGGGCTCTGGGAAGGACCCTGTTTTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000547920.1
CDS-3UTR TCA 90 bp AAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGCTGGGCAGACACCTaGAGTTCCTGGTACTTGGTC +
Preference number: 4 (lower is better)
Translates to: KTSVELWEMEGTPRNTLESWADT*SSWYLV
Trigger: GACCAAGTACCAGGAACTTCAGGTGTCTGCCCAGCT...CTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp CTGGGTCTGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTTGCCCAAGGATAAGATaGGAGCCAACAGATAAGGGG +
Preference number: 4 (lower is better)
Translates to: LGLESENGERATAGTHEACPRIR*EPTDKG
Trigger: CCCCTTATCTGTTGGCTCTCATCTTATCCTTGGGCA...AGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCAGACCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp CTGGGTCTGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTCCTCCAACTCCATCTTaGTCAGGAAAACCCCATCCA +
Preference number: 4 (lower is better)
Translates to: LGLESENGERATAGTHEAPPTPS*SGKPHP
Trigger: TGGATGGGGTTTTCCTGAGCAAGATGGAGTTGGAGG...AGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCAGACCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp GAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGTGCAGGCTGGCGTTCTaGTTCTTGAGGTTCTCAGTC +
Preference number: 4 (lower is better)
Translates to: EGTPRNTLESLKDPLIEWCRLAF*FLRFSV
Trigger: GACTGAGAACCTCAAGAAGCAGAACGCCAGCCTGCA...CCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp GGATGTCTTCAGACTCGACTCAACTGTCTTCTTCAGGATGGTGTGGCAGCTGGAAGCCTCCAGTCACAATaGTGGTGCAGCAGGACCCAG +
Preference number: 4 (lower is better)
Translates to: GCLQTRLNCLLQDGVAAGSLQSQ*WCSRTQ
Trigger: CTGGGTCCTGCTGCACCAGCATTGTGACTGGAGGCT...TCCAGCTGCCACACCATCCTGAAGAAGACAGTTGAGTCGAGTCTGAAGACATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000547920.1
CDS-3UTR GCA 90 bp TGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTGCTGGGGACACAGCTTTTGTTTTaGTGGGTGAGGTGTGCAAGC +
Preference number: 4 (lower is better)
Translates to: WKARMGKEQLQAPMRLLGTQLLF*WVRCAS
Trigger: GCTTGCACACCTCACCCAGCAAAACAAAAGCTGTGT...CCCCAGCAGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGCTGGGATGTGGAAGTGTGGCACGCCTGTaGGCCTCCTCCTCATACTTG +
Preference number: 4 (lower is better)
Translates to: RNTLESLKDPLIEWLGCGSVARL*ASSSYL
Trigger: CAAGTATGAGGAGGAGGCCCACAGGCGTGCCACACT...TCCACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGCTGGGATGTGGAGCCTGGGTCTGGAGCTaGCCCAGCTCTTCTTCATTC +
Preference number: 4 (lower is better)
Translates to: RNTLESLKDPLIEWLGCGAWVWS*PSSSSF
Trigger: GAATGAAGAAGAGCTGGGCCAGCTCCAGACCCAGGC...TCCACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp ACATCCTCATCCTGGATGCAGGAGTGCCAGGCTAATAGAGAAGCTGAGTCCCTTTTCTTCAGGATGGTGTaGCAGCTGGAGCCAGCGCTG +
Preference number: 4 (lower is better)
Translates to: TSSSWMQECQANREAESLFFRMV*QLEPAL
Trigger: CAGCGCTGGCTCCAGCTGCCACACCATCCTGAAGAA...AAGGGACTCAGCTTCTCTATTAGCCTGGCACTCCTGCATCCAGGATGAGGATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp GCTACAAGCACAGCTAAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAACATCAGTGGAGTTGTaGGAGATGGAGGGCACCCCA +
Preference number: 4 (lower is better)
Translates to: ATSTAKTSVELWEMEGTPTSVEL*EMEGTP
Trigger: TGGGGTGCCCTCCATCTCCCACAACTCCACTGATGT...TGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTTAGCTGTGCTTGTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp ATTGATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACTTTTGTTTTGCTGGGTaGGGTGTGCAAGCACTTAGA +
Preference number: 4 (lower is better)
Translates to: IDFCSIRCGLAWAVGSGHFCFAG*GVQALR
Trigger: TCTAAGTGCTTGCACACCTCACCCAGCAAAACAAAA...GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATCAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp AAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGACAGTCACGCAGCTaGAGACGGACAGACAGATTG +
Preference number: 4 (lower is better)
Translates to: KTSVELWEMEGTPRNTLERQSRS*RRTDRL
Trigger: CAATCTGTCTGTCCGTCTGCAGCTGCGTGACTGTCT...CTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000304620.5
CDS-3UTR GCA 90 bp ACATCCTCATCCTGGATGCAGGAGTGCCAGGCTAATAGAGAAGCTGAGTCCCTTCCACTCAACCCCTGTTaGTGCAGCAGATGCCACTTC +
Preference number: 4 (lower is better)
Translates to: TSSSWMQECQANREAESLPLNPC*CSRCHF
Trigger: GAAGTGGCATCTGCTGCAGCAACAGGGGTTGAGTGG...AAGGGACTCAGCTTCTCTATTAGCCTGGCACTCCTGCATCCAGGATGAGGATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp AGAGTGGCTGGGATGTGGAGTGAGATACCAATAGAACACGTCTGGACACAGATACGTTCTCCCTGGAGCTaGTCCAGCTGCTTCCTGAGC +
Preference number: 4 (lower is better)
Translates to: RVAGMWSEIPIEHVWTQIRSPWS*SSCFLS
Trigger: GCTCAGGAAGCAGCTGGAGCAGCTCCAGGGAGAACG...TATCTGTGTCCAGACGTGTTCTATTGGTATCTCACTCCACATCCCAGCCACTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp GGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATGAAGTTCCTGGTACTTaGTCTGGTACAAGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: GDGGHPKEHTGELEGSLDEVPGT*SGTRPQ
Trigger: CTGAGGCCTTGTACCAGACCAAGTACCAGGAACTTC...ATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp GATGGAGCGATTCATGAATCTGAGGAAAGGTCTGCCCTCCCTCTAAAGCAAGGAGAGGAGATAGTGACCTaGCTGGTGCACTCCCCAGAC +
Preference number: 4 (lower is better)
Translates to: DGAIHESEERSALPLKQGEEIVT*LVHSPD
Trigger: GTCTGGGGAGTGCACCAGCCAGGTCACTATCTCCTC...TCCTTGCTTTAGAGGGAGGGCAGACCTTTCCTCAGATTCATGAATCGCTCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp GGATGTCTTCAGACTCGACTCAACTGTCTTCTTCAGGATGGTGTGGCAGCTGGATGTTCAGGAAGGAGGTaGCTGCTGGGTCGCTCAGTA +
Preference number: 4 (lower is better)
Translates to: GCLQTRLNCLLQDGVAAGCSGRR*LLGRSV
Trigger: TACTGAGCGACCCAGCAGCCACCTCCTTCCTGAACA...TCCAGCTGCCACACCATCCTGAAGAAGACAGTTGAGTCGAGTCTGAAGACATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000547920.1
3UTR CAA 72 bp GAGGAGAGGAAGCTGGGGAGCCACACAGCTTTTGTTTaGCTGGGTGAGGTGTGCAAGCACTTAGAGCATTCA +
Preference number: 4 (lower is better)
Translates to: EERKLGSHTAFV*LGEVCKHLEHS
Trigger: TGAATGCTCTAAGTGCTTGCACACCTCACCCAGCAAAACAAAAGCTGTGTGGCTCCCCAGCTTCCTCTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp AATTTAATTGAACTACCTTGGATGAATTTAGTTTCCTTCTGGGATCCTAGTGGCAGGCTGAGCGAGCGCTaGAGCCCCTCTGGGCCCGGC +
Preference number: 4 (lower is better)
Translates to: NLIELPWMNLVSFWDPSGRLSER*SPSGPG
Trigger: GCCGGGCCCAGAGGGGCTTCAGCGCTCGCTCAGCCT...GCCACTAGGATCCCAGAAGGAAACTAAATTCATCCAAGGTAGTTCAATTAAATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000304620.5
CDS-3UTR GCA 90 bp ATTGATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACAGGAGAAAATTTTGGTaGACAGTCAGGAAGAAGGAG +
Preference number: 4 (lower is better)
Translates to: IDFCSIRCGLAWAVGSGHRRKFW*TVRKKE
Trigger: CTCCTTCTTCCTGACTGTGCACCAAAATTTTCTCCT...GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATCAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp GCTACAAGCACAGCTAAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAGAAGTTCCTGGTACTTaGTCTGGTACAAGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: ATSTAKTSVELWEMEGTPEVPGT*SGTRPQ
Trigger: CTGAGGCCTTGTACCAGACCAAGTACCAGGAACTTC...TGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTTAGCTGTGCTTGTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp GAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGCAGCTTTTGTTTTGCTaGGTGAGGTGTGCAAGCACT +
Preference number: 4 (lower is better)
Translates to: EGTPRNTLESLKDPLIEWQLLFC*VRCAST
Trigger: AGTGCTTGCACACCTCACCCAGCAAAACAAAAGCTG...CCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAAGGAACACACTGGAGGATCCCTTGATAGAGTaGCTGGGATGTGGAGTGAGA +
Preference number: 4 (lower is better)
Translates to: KTSVELWEMEGTPRNTLEDPLIE*LGCGVR
Trigger: TCTCACTCCACATCCCAGCCACTCTATCAAGGGATC...CTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCACACAACAGCTAAAACATCAGTaGAGTTGTGGGAGATGGAGG +
Preference number: 4 (lower is better)
Translates to: SRAGIQATSSPALVSFTQQLKHQ*SCGRWR
Trigger: CCTCCATCTCCCACAACTCCACTGATGTTTTAGCTG...TTGTGTGAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp ATTGATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACAATTTAGTTTCCTTCTaGGATCCTAGTGGCACTGTC +
Preference number: 4 (lower is better)
Translates to: IDFCSIRCGLAWAVGSGHNLVSF*DPSGTV
Trigger: GACAGTGCCACTAGGATCCCAGAAGGAAACTAAATT...GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATCAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp GGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATCAGTTGATGAGGAAGTaGGCTACAAGCACAGCTAAA +
Preference number: 4 (lower is better)
Translates to: GDGGHPKEHTGELEGSLDQLMRK*ATSTAK
Trigger: TTTAGCTGTGCTTGTAGCTCACTTCCTCATCAACTG...ATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp ACATCCTCATCCTGGATGCAGGAGTGCCAGGCTAATAGAGAAGCTGAGTCCCTTTGCCCAAGGATAAGATaGGAGCCAACAGATAAGGGG +
Preference number: 4 (lower is better)
Translates to: TSSSWMQECQANREAESLCPRIR*EPTDKG
Trigger: CCCCTTATCTGTTGGCTCTCATCTTATCCTTGGGCA...AAGGGACTCAGCTTCTCTATTAGCCTGGCACTCCTGCATCCAGGATGAGGATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp AGAGTGGCTGGGATGTGGAGTGAGATACCAATAGAACACGTCTGGACACAGATACTCAACCCCTGTTGCTaGAGCAGATGCCACTTCGTC +
Preference number: 4 (lower is better)
Translates to: RVAGMWSEIPIEHVWTQILNPCC*SRCHFV
Trigger: GACGAAGTGGCATCTGCTGCAGCAACAGGGGTTGAG...TATCTGTGTCCAGACGTGTTCTATTGGTATCTCACTCCACATCCCAGCCACTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp GGAAACAGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCGCTGAAAAGCCTTCTTaGATAATTTGGATGGAGCGA +
Preference number: 4 (lower is better)
Translates to: GNSRAGIQATSSPALVSFAEKPS*IIWMER
Trigger: TCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGC...GAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCTGTTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCACACAAGATCTCAATCTTCAGTaGGGTCAGCAGATTCTGGTT +
Preference number: 4 (lower is better)
Translates to: SRAGIQATSSPALVSFTQDLNLQ*GQQILV
Trigger: AACCAGAATCTGCTGACCCCACTGAAGATTGAGATC...TTGTGTGAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000304620.5
CDS-3UTR CCA 90 bp AGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGCTGGGATGTGGATCTGGAAAGCGAGAATaGGGAAAGAGCAACTGCAGG +
Preference number: 4 (lower is better)
Translates to: RNTLESLKDPLIEWLGCGSGKRE*GKSNCR
Trigger: CCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCAGA...TCCACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp ACATCCTCATCCTGGATGCAGGAGTGCCAGGCTAATAGAGAAGCTGAGTCCCTTTCTGGAAAGCGAGAATaGGGAAAGAGCAACTGCAGG +
Preference number: 4 (lower is better)
Translates to: TSSSWMQECQANREAESLSGKRE*GKSNCR
Trigger: CCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCAGA...AAGGGACTCAGCTTCTCTATTAGCCTGGCACTCCTGCATCCAGGATGAGGATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AGAGTGGCTGGGATGTGGAGTGAGATACCAATAGAACACGTCTGGACACAGATACTGCAGCCCAGACTATaGAGTTTGGGGTTGAGCCAG +
Preference number: 4 (lower is better)
Translates to: RVAGMWSEIPIEHVWTQILQPRL*SLGLSQ
Trigger: CTGGCTCAACCCCAAACTCCATAGTCTGGGCTGCAG...TATCTGTGTCCAGACGTGTTCTATTGGTATCTCACTCCACATCCCAGCCACTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
3UTR CAA 72 bp ACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTaGATAGAGTGGCTGGGATGTGGAGTGAGATACCAA +
Preference number: 4 (lower is better)
Translates to: TPRNTLESLKDP*IEWLGCGVRYQ
Trigger: TTGGTATCTCACTCCACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp GCTACAAGCACAGCTAAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAATCTCTTGGTGTAGCTaGGAGATCTGGACTTTCGTT +
Preference number: 4 (lower is better)
Translates to: ATSTAKTSVELWEMEGTPISWCS*EIWTFV
Trigger: AACGAAAGTCCAGATCTCTCAGCTACACCAAGAGAT...TGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTTAGCTGTGCTTGTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp AAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAAGGAACACACTGGAGCAGTTGATGAGGAAGTaGGCTACAAGCACAGCTAAA +
Preference number: 4 (lower is better)
Translates to: KTSVELWEMEGTPRNTLEQLMRK*ATSTAK
Trigger: TTTAGCTGTGCTTGTAGCTCACTTCCTCATCAACTG...CTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp AGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGCTGGGATGTGGAACACAGCTTTTGTTTTaGTGGGTGAGGTGTGCAAGC +
Preference number: 4 (lower is better)
Translates to: RNTLESLKDPLIEWLGCGTQLLF*WVRCAS
Trigger: GCTTGCACACCTCACCCAGCAAAACAAAAGCTGTGT...TCCACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp GGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATGCTGAAAAGCCTTCTTaGATAATTTGGATGGAGCGA +
Preference number: 4 (lower is better)
Translates to: GDGGHPKEHTGELEGSLDAEKPS*IIWMER
Trigger: TCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGC...ATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp TGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTGCTGGGGCCTTCTTGCATAATTTaGATGGAGCGATTCATGAAT +
Preference number: 4 (lower is better)
Translates to: WKARMGKEQLQAPMRLLGPSCII*MERFMN
Trigger: ATTCATGAATCGCTCCATCCAAATTATGCAAGAAGG...CCCCAGCAGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp GCTGAAAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAATCCTGGCACCCCACCTaGTTCCCACACTCCTGGCTT +
Preference number: 4 (lower is better)
Translates to: AEKPSCIIWMERFMNLRKSWHPT*FPHSWL
Trigger: AAGCCAGGAGTGTGGGAATCAGGTGGGGTGCCAGGA...TTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp GAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGTCCTTCACACAAAGCTaGAAAGCCTTCTTGCATAAT +
Preference number: 4 (lower is better)
Translates to: EGTPRNTLESLKDPLIEWSFTQS*KAFLHN
Trigger: ATTATGCAAGAAGGCTTTTCAGCTTTGTGTGAAGGA...CCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp GCTGAAAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAATCTCCTGGGTCTCCTaGGTCCGCACCACCTGGAAC +
Preference number: 4 (lower is better)
Translates to: AEKPSCIIWMERFMNLRKISWVS*VRTTWN
Trigger: GTTCCAGGTGGTGCGGACGCAGGAGACCCAGGAGAT...TTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000304620.5
CDS-3UTR GCA 90 bp AAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAGGTCTTCAGTGATGGCGGCCTaGAGGCTGGCGTTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: KAFLHNLDGAIHESEERSSVMAA*RLAFCF
Trigger: GAAGCAGAACGCCAGCCTGCAGGCCGCCATCACTGA...AGACCTTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp GCTGAAAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAACAGTCACAATGCTGGTaGAGCAGGACCCAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: AEKPSCIIWMERFMNLRKQSQCW*SRTQGC
Trigger: GCAGCCCTGGGTCCTGCTGCACCAGCATTGTGACTG...TTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp AGAGTGGCTGGGATGTGGAGTGAGATACCAATAGAACACGTCTGGACACAGATAGTCTGGACACAGATATaGCACAATTGCCTTCCGAGG +
Preference number: 4 (lower is better)
Translates to: RVAGMWSEIPIEHVWTQIVWTQI*HNCLPR
Trigger: CCTCGGAAGGCAATTGTGGCATATCTGTGTCCAGAC...TATCTGTGTCCAGACGTGTTCTATTGGTATCTCACTCCACATCCCAGCCACTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AATTTAATTGAACTACCTTGGATGAATTTAGTTTCCTTCTGGGATCCTAGTGGCGGCTGGCTTGGGCTGTaGGCAGCGGACACGGAGTTG +
Preference number: 4 (lower is better)
Translates to: NLIELPWMNLVSFWDPSGGWLGL*AADTEL
Trigger: CAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCC...GCCACTAGGATCCCAGAAGGAAACTAAATTCATCCAAGGTAGTTCAATTAAATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAAGGAACACACTGGAGAATTTAGTTTCCTTCTaGGATCCTAGTGGCACTGTC +
Preference number: 4 (lower is better)
Translates to: KTSVELWEMEGTPRNTLENLVSF*DPSGTV
Trigger: GACAGTGCCACTAGGATCCCAGAAGGAAACTAAATT...CTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp AAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAAGGAACACACTGGAGTCCTTCACACAAAGCTaGAAAGCCTTCTTGCATAAT +
Preference number: 4 (lower is better)
Translates to: KTSVELWEMEGTPRNTLESFTQS*KAFLHN
Trigger: ATTATGCAAGAAGGCTTTTCAGCTTTGTGTGAAGGA...CTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp AGAGTGGCTGGGATGTGGAGTGAGATACCAATAGAACACGTCTGGACACAGATATTGCTGGGTGAGGTGTaGAAGCACTTAGAGCATTCA +
Preference number: 4 (lower is better)
Translates to: RVAGMWSEIPIEHVWTQILLGEV*KHLEHS
Trigger: TGAATGCTCTAAGTGCTTGCACACCTCACCCAGCAA...TATCTGTGTCCAGACGTGTTCTATTGGTATCTCACTCCACATCCCAGCCACTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAGGTCTGAGGAGATAGTGACCTaGCTGGTGCACTCCCCAGAC +
Preference number: 4 (lower is better)
Translates to: KAFLHNLDGAIHESEERSEEIVT*LVHSPD
Trigger: GTCTGGGGAGTGCACCAGCCAGGTCACTATCTCCTC...AGACCTTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAGGTCTTTCTTCAGGATGGTGTaGCAGCTGGAGCCAGCGCTG +
Preference number: 4 (lower is better)
Translates to: KAFLHNLDGAIHESEERSFFRMV*QLEPAL
Trigger: CAGCGCTGGCTCCAGCTGCCACACCATCCTGAAGAA...AGACCTTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAGGTCTCCGAGGAGAGGAAGCTaGGGAGCCACACAGCTTTTG +
Preference number: 4 (lower is better)
Translates to: KAFLHNLDGAIHESEERSPRRGS*GATQLL
Trigger: CAAAAGCTGTGTGGCTCCCCAGCTTCCTCTCCTCGG...AGACCTTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp GGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATCCTTCTTGCATAATTTaGATGGAGCGATTCATGAAT +
Preference number: 4 (lower is better)
Translates to: GDGGHPKEHTGELEGSLDPSCII*MERFMN
Trigger: ATTCATGAATCGCTCCATCCAAATTATGCAAGAAGG...ATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR TCA 90 bp AATTTAATTGAACTACCTTGGATGAATTTAGTTTCCTTCTGGGATCCTAGTGGCTCCTGGCACCCCACCTaGTTCCCACACTCCTGGCTT +
Preference number: 4 (lower is better)
Translates to: NLIELPWMNLVSFWDPSGSWHPT*FPHSWL
Trigger: AAGCCAGGAGTGTGGGAATCAGGTGGGGTGCCAGGA...GCCACTAGGATCCCAGAAGGAAACTAAATTCATCCAAGGTAGTTCAATTAAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp GCTGAAAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAACCACTCAACCCCTGTTaGTGCAGCAGATGCCACTTC +
Preference number: 4 (lower is better)
Translates to: AEKPSCIIWMERFMNLRKPLNPC*CSRCHF
Trigger: GAAGTGGCATCTGCTGCAGCAACAGGGGTTGAGTGG...TTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp GCTGAAAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAACTGTCTTCTTCAGGATaGTGTGGCAGCTGGAGCCAG +
Preference number: 4 (lower is better)
Translates to: AEKPSCIIWMERFMNLRKLSSSG*CGSWSQ
Trigger: CTGGCTCCAGCTGCCACACCATCCTGAAGAAGACAG...TTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp AAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAGGTCTCGTAGTGTGACCTCCTaGAGCCCAGACTATGGAGTT +
Preference number: 4 (lower is better)
Translates to: KAFLHNLDGAIHESEERSRSVTS*SPDYGV
Trigger: AACTCCATAGTCTGGGCTGCAGGAGGTCACACTACG...AGACCTTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp GCTGAAAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAACATCCTCACCGGCTCTaGTCTCCTTCACACAAAGCT +
Preference number: 4 (lower is better)
Translates to: AEKPSCIIWMERFMNLRKHPHRL*SPSHKA
Trigger: AGCTTTGTGTGAAGGAGACCAGAGCCGGTGAGGATG...TTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp AAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAGGTCTGTCTGGACACAGATATaGCACAATTGCCTTCCGAGG +
Preference number: 4 (lower is better)
Translates to: KAFLHNLDGAIHESEERSVWTQI*HNCLPR
Trigger: CCTCGGAAGGCAATTGTGGCATATCTGTGTCCAGAC...AGACCTTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp GCTGAAAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAATCCTGGATGCAGGAGTaGCAGGCTAATAGAGAAGCT +
Preference number: 4 (lower is better)
Translates to: AEKPSCIIWMERFMNLRKSWMQE*QANREA
Trigger: AGCTTCTCTATTAGCCTGGCACTCCTGCATCCAGGA...TTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CCA 90 bp AAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAGGTCTCAGCTAAAACATCAGTaGAGTTGTGGGAGATGGAGG +
Preference number: 4 (lower is better)
Translates to: KAFLHNLDGAIHESEERSQLKHQ*SCGRWR
Trigger: CCTCCATCTCCCACAACTCCACTGATGTTTTAGCTG...AGACCTTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR GCA 90 bp AAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAAGGTCTAGGAGAAAATTTTGGTaGACAGTCAGGAAGAAGGAG +
Preference number: 4 (lower is better)
Translates to: KAFLHNLDGAIHESEERSRRKFW*TVRKKE
Trigger: CTCCTTCTTCCTGACTGTGCACCAAAATTTTCTCCT...AGACCTTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp ATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGCCCTGCTGCGGCCCCTaGAGCGAGCAGAACAGGCTG +
Preference number: 5 (lower is better)
Translates to: IFAASAVGWLGLWAADTEPCCGP*SEQNRL
Trigger: CAGCCTGTTCTGCTCGCTCAAGGGGCCGCAGCAGGG...CTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000304620.5
CDS-3UTR CAA 90 bp GATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGCAGCGGACACGGAGTaGGCCTTGCAGAGCCGGCTG +
Preference number: 5 (lower is better)
Translates to: DFCSIRCGLAWAVGSGHGAADTE*ALQSRL
Trigger: CAGCCGGCTCTGCAAGGCCAACTCCGTGTCCGCTGC...TCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR CAA 90 bp CAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTCTATGGAGTTTGGGGTaGAGCCAGGTCCCCCACCTG +
Preference number: 5 (lower is better)
Translates to: QHPLWAGLGCGQRTRSWPLWSLG*SQVPHL
Trigger: CAGGTGGGGGACCTGGCTCAACCCCAAACTCCATAG...AGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp CAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTCCCAGACTATGGAGTTaGGGGTTGAGCCAGGTCCCC +
Preference number: 5 (lower is better)
Translates to: QHPLWAGLGCGQRTRSWPPRLWS*GLSQVP
Trigger: GGGGACCTGGCTCAACCCCAAACTCCATAGTCTGGG...AGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp CAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGGCCTCCCTCCAACTCCATCTaGCTCAGGAAAACCCCATCC +
Preference number: 5 (lower is better)
Translates to: QHPLWAGLGCGQRTRSWPPSNSI*LRKTPS
Trigger: GGATGGGGTTTTCCTGAGCAAGATGGAGTTGGAGGG...AGGCCAACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp TGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTGCTGGGGCGGGCCAGGTTCTGCTaGGCCATCCTCAGAGCAGCC +
Preference number: 5 (lower is better)
Translates to: WKARMGKEQLQAPMRLLGRARFC*AILRAA
Trigger: GGCTGCTCTGAGGATGGCCAAGCAGAACCTGGCCCG...CCCCAGCAGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp ATTGATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGACACGGAGTTGGCCTaGCAGAGCCGGCTGATGGGG +
Preference number: 5 (lower is better)
Translates to: IDFCSIRCGLAWAVGSGHDTELA*QSRLMG
Trigger: CCCCATCAGCCGGCTCTGCAAGGCCAACTCCGTGTC...GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATCAAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR CAA 90 bp GGAAACAGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCGCAGCGGACACGGAGTaGGCCTTGCAGAGCCGGCTG +
Preference number: 5 (lower is better)
Translates to: GNSRAGIQATSSPALVSFAADTE*ALQSRL
Trigger: CAGCCGGCTCTGCAAGGCCAACTCCGTGTCCGCTGC...GAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCTGTTTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp GATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGACTCAGAGCCTCCAGCTaGCCCTCCAACTCCATCTTG +
Preference number: 5 (lower is better)
Translates to: DFCSIRCGLAWAVGSGHGLRASS*PSNSIL
Trigger: CAAGATGGAGTTGGAGGGCAAGCTGGAGGCTCTGAG...TCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp AGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCACACAAGACACGGAGTTGGCCTaGCAGAGCCGGCTGATGGGG +
Preference number: 5 (lower is better)
Translates to: SRAGIQATSSPALVSFTQDTELA*QSRLMG
Trigger: CCCCATCAGCCGGCTCTGCAAGGCCAACTCCGTGTC...TTGTGTGAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp ATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGGAGCCCAGAATGATGTaGGAGCCTCCAGTCACAATG +
Preference number: 5 (lower is better)
Translates to: IFAASAVGWLGLWAADTEEPRMM*EPPVTM
Trigger: CATTGTGACTGGAGGCTCCAACATCATTCTGGGCTC...CTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR CAA 90 bp GGATGTCTTCAGACTCGACTCAACTGTCTTCTTCAGGATGGTGTGGCAGCTGGAGCAGCGGACACGGAGTaGGCCTTGCAGAGCCGGCTG +
Preference number: 5 (lower is better)
Translates to: GCLQTRLNCLLQDGVAAGAADTE*ALQSRL
Trigger: CAGCCGGCTCTGCAAGGCCAACTCCGTGTCCGCTGC...TCCAGCTGCCACACCATCCTGAAGAAGACAGTTGAGTCGAGTCTGAAGACATCC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000547920.1
CDS-3UTR CAA 90 bp GGAAACAGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCGCCACTCAACCCCTGTaGCTGCAGCAGATGCCACTT +
Preference number: 5 (lower is better)
Translates to: GNSRAGIQATSSPALVSFATQPL*LQQMPL
Trigger: AAGTGGCATCTGCTGCAGCAACAGGGGTTGAGTGGC...GAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCTGTTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp ATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGCACACAGCTTTTGTTTaGCTGGGTGAGGTGTGCAAG +
Preference number: 5 (lower is better)
Translates to: IFAASAVGWLGLWAADTEHTAFV*LGEVCK
Trigger: CTTGCACACCTCACCCAGCAAAACAAAAGCTGTGTG...CTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp TTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTAGCTTGAAGGATCCCTaGATAGAGTGGCTGGGATGT +
Preference number: 5 (lower is better)
Translates to: FCSIRCGLAWAVGSGHGVSLKDP*IEWLGC
Trigger: ACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCT...AACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp GGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATGCCACTCAACCCCTGTaGCTGCAGCAGATGCCACTT +
Preference number: 5 (lower is better)
Translates to: GDGGHPKEHTGELEGSLDATQPL*LQQMPL
Trigger: AAGTGGCATCTGCTGCAGCAACAGGGGTTGAGTGGC...ATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp ATTGATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGAGCCCAGAATGATGTaGGAGCCTCCAGTCACAATG +
Preference number: 5 (lower is better)
Translates to: IDFCSIRCGLAWAVGSGHEPRMM*EPPVTM
Trigger: CATTGTGACTGGAGGCTCCAACATCATTCTGGGCTC...GTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAATCAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000304620.5
ENST00000359499.8
ENST00000547920.1
CDS-3UTR CAA 90 bp ATTTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGAAGAGGTCAAGCTGCTaGATCAAGGTCACACCACTA +
Preference number: 5 (lower is better)
Translates to: IFAASAVGWLGLWAADTEKRSSC*IKVTPL
Trigger: TAGTGGTGTGACCTTGATCAAGCAGCTTGACCTCTT...CTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp CTGGGTCTGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTGCCTCCTCCTCATACTaGGACTTATACTCCTCCTCC +
Preference number: 5 (lower is better)
Translates to: LGLESENGERATAGTHEAASSSY*DLYSSS
Trigger: GGAGGAGGAGTATAAGTCCAAGTATGAGGAGGAGGC...AGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCAGACCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp GAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGCCCTCCAACTCCATCTaGCTCAGGAAAACCCCATCC +
Preference number: 5 (lower is better)
Translates to: EGTPRNTLESLKDPLIEWPSNSI*LRKTPS
Trigger: GGATGGGGTTTTCCTGAGCAAGATGGAGTTGGAGGG...CCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp GGAAACAGCAGAGCTGGGATTCAAGCCACATCCTCACCGGCTCTGGTCTCCTTCGAGCCCAGAATGATGTaGGAGCCTCCAGTCACAATG +
Preference number: 5 (lower is better)
Translates to: GNSRAGIQATSSPALVSFEPRMM*EPPVTM
Trigger: CATTGTGACTGGAGGCTCCAACATCATTCTGGGCTC...GAAGGAGACCAGAGCCGGTGAGGATGTGGCTTGAATCCCAGCTCTGCTGTTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp CTGGGTCTGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTGGAGCCACACAGCTTTaGTTTTGCTGGGTGAGGTGT +
Preference number: 5 (lower is better)
Translates to: LGLESENGERATAGTHEAGATQL*FCWVRC
Trigger: ACACCTCACCCAGCAAAACAAAAGCTGTGTGGCTCC...AGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCAGACCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp ACATCCTCATCCTGGATGCAGGAGTGCCAGGCTAATAGAGAAGCTGAGTCCCTTCCCAGACTATGGAGTTaGGGGTTGAGCCAGGTCCCC +
Preference number: 5 (lower is better)
Translates to: TSSSWMQECQANREAESLPRLWS*GLSQVP
Trigger: GGGGACCTGGCTCAACCCCAAACTCCATAGTCTGGG...AAGGGACTCAGCTTCTCTATTAGCCTGGCACTCCTGCATCCAGGATGAGGATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp GAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGGGAGCCACACAGCTTTaGTTTTGCTGGGTGAGGTGT +
Preference number: 5 (lower is better)
Translates to: EGTPRNTLESLKDPLIEWGATQL*FCWVRC
Trigger: ACACCTCACCCAGCAAAACAAAAGCTGTGTGGCTCC...CCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp TGGAAAGCGAGAATGGGGAAAGAGCAACTGCAGGCACCCATGAGGCTGCTGGGGAACACACTGGAGAGCTaGAAGGATCCCTTGATAGAG +
Preference number: 5 (lower is better)
Translates to: WKARMGKEQLQAPMRLLGNTLES*KDPLIE
Trigger: CTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTT...CCCCAGCAGCCTCATGGGTGCCTGCAGTTGCTCTTTCCCCATTCTCGCTTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp TTTTGCAGCATCCGCTGTGGGCTGGCTTGGGCTGTGGGCAGCGGACACGGAGTTGCCTTCTTGCATAATTaGGATGGAGCGATTCATGAA +
Preference number: 5 (lower is better)
Translates to: FCSIRCGLAWAVGSGHGVAFLHN*DGAIHE
Trigger: TTCATGAATCGCTCCATCCAAATTATGCAAGAAGGC...AACTCCGTGTCCGCTGCCCACAGCCCAAGCCAGCCCACAGCGGATGCTGCAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp GCTACAAGCACAGCTAAAACATCAGTGGAGTTGTGGGAGATGGAGGGCACCCCAGCCTCCTCCTCATACTaGGACTTATACTCCTCCTCC +
Preference number: 5 (lower is better)
Translates to: ATSTAKTSVELWEMEGTPASSSY*DLYSSS
Trigger: GGAGGAGGAGTATAAGTCCAAGTATGAGGAGGAGGC...TGGGGTGCCCTCCATCTCCCACAACTCCACTGATGTTTTAGCTGTGCTTGTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp GAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGAGACGGACAGACAGATaGTCAAGGTGTGTGAGTTTC +
Preference number: 5 (lower is better)
Translates to: EGTPRNTLESLKDPLIEWRRTDR*SRCVSF
Trigger: GAAACTCACACACCTTGACAATCTGTCTGTCCGTCT...CCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000304620.5
CDS-3UTR CAA 90 bp GAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGGTCAGCAGATTCTGGTaGATGGTCACTTCTTGGATG +
Preference number: 5 (lower is better)
Translates to: EGTPRNTLESLKDPLIEWVSRFW*MVTSWM
Trigger: CATCCAAGAAGTGACCATCAACCAGAATCTGCTGAC...CCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000304620.5
CDS-3UTR CAA 90 bp AGAGTGGCTGGGATGTGGAGTGAGATACCAATAGAACACGTCTGGACACAGATACTCAGAGCCTCCAGCTaGCCCTCCAACTCCATCTTG +
Preference number: 5 (lower is better)
Translates to: RVAGMWSEIPIEHVWTQILRASS*PSNSIL
Trigger: CAAGATGGAGTTGGAGGGCAAGCTGGAGGCTCTGAG...TATCTGTGTCCAGACGTGTTCTATTGGTATCTCACTCCACATCCCAGCCACTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp ACATCCTCATCCTGGATGCAGGAGTGCCAGGCTAATAGAGAAGCTGAGTCCCTTAAAACATCAGTGGAGTaGTGGGAGATGGAGGGCACC +
Preference number: 5 (lower is better)
Translates to: TSSSWMQECQANREAESLKTSVE*WEMEGT
Trigger: GGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT...AAGGGACTCAGCTTCTCTATTAGCCTGGCACTCCTGCATCCAGGATGAGGATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp GGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATGCCTCATGTTCACACTaGCCCAAGGATAAGATGAGA +
Preference number: 5 (lower is better)
Translates to: GDGGHPKEHTGELEGSLDASCSH*PKDKMR
Trigger: TCTCATCTTATCCTTGGGCAAGTGTGAACATGAGGC...ATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp GGAGATGGAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAAGAGGTCAAGCTGCTaGATCAAGGTCACACCACTA +
Preference number: 5 (lower is better)
Translates to: GDGGHPKEHTGELEGSLDKRSSC*IKVTPL
Trigger: TAGTGGTGTGACCTTGATCAAGCAGCTTGACCTCTT...ATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTCCATCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp GCTGAAAAGCCTTCTTGCATAATTTGGATGGAGCGATTCATGAATCTGAGGAAACGGGCCAGGTTCTGCTaGGCCATCCTCAGAGCAGCC +
Preference number: 5 (lower is better)
Translates to: AEKPSCIIWMERFMNLRKRARFC*AILRAA
Trigger: GGCTGCTCTGAGGATGGCCAAGCAGAACCTGGCCCG...TTTCCTCAGATTCATGAATCGCTCCATCCAAATTATGCAAGAAGGCTTTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp AGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGCTGGGATGTGGACACACAGCTTTTGTTTaGCTGGGTGAGGTGTGCAAG +
Preference number: 5 (lower is better)
Translates to: RNTLESLKDPLIEWLGCGHTAFV*LGEVCK
Trigger: CTTGCACACCTCACCCAGCAAAACAAAAGCTGTGTG...TCCACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp AGAGTGGCTGGGATGTGGAGTGAGATACCAATAGAACACGTCTGGACACAGATAAAAACATCAGTGGAGTaGTGGGAGATGGAGGGCACC +
Preference number: 5 (lower is better)
Translates to: RVAGMWSEIPIEHVWTQIKTSVE*WEMEGT
Trigger: GGTGCCCTCCATCTCCCACAACTCCACTGATGTTTT...TATCTGTGTCCAGACGTGTTCTATTGGTATCTCACTCCACATCCCAGCCACTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp AGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGCTGGGATGTGGAGCCTCATGTTCACACTaGCCCAAGGATAAGATGAGA +
Preference number: 5 (lower is better)
Translates to: RNTLESLKDPLIEWLGCGASCSH*PKDKMR
Trigger: TCTCATCTTATCCTTGGGCAAGTGTGAACATGAGGC...TCCACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp GAGGGCACCCCAAGGAACACACTGGAGAGCTTGAAGGATCCCTTGATAGAGTGGGCCTTCTTGCATAATTaGGATGGAGCGATTCATGAA +
Preference number: 5 (lower is better)
Translates to: EGTPRNTLESLKDPLIEWAFLHN*DGAIHE
Trigger: TTCATGAATCGCTCCATCCAAATTATGCAAGAAGGC...CCACTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTTCCTTGGGGTGCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp AATTTAATTGAACTACCTTGGATGAATTTAGTTTCCTTCTGGGATCCTAGTGGCCTATGGAGTTTGGGGTaGAGCCAGGTCCCCCACCTG +
Preference number: 5 (lower is better)
Translates to: NLIELPWMNLVSFWDPSGLWSLG*SQVPHL
Trigger: CAGGTGGGGGACCTGGCTCAACCCCAAACTCCATAG...GCCACTAGGATCCCAGAAGGAAACTAAATTCATCCAAGGTAGTTCAATTAAATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp AATTTAATTGAACTACCTTGGATGAATTTAGTTTCCTTCTGGGATCCTAGTGGCAGCTTGAAGGATCCCTaGATAGAGTGGCTGGGATGT +
Preference number: 5 (lower is better)
Translates to: NLIELPWMNLVSFWDPSGSLKDP*IEWLGC
Trigger: ACATCCCAGCCACTCTATCAAGGGATCCTTCAAGCT...GCCACTAGGATCCCAGAAGGAAACTAAATTCATCCAAGGTAGTTCAATTAAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS-3UTR CAA 90 bp AATTTAATTGAACTACCTTGGATGAATTTAGTTTCCTTCTGGGATCCTAGTGGCAACACACTGGAGAGCTaGAAGGATCCCTTGATAGAG +
Preference number: 5 (lower is better)
Translates to: NLIELPWMNLVSFWDPSGNTLES*KDPLIE
Trigger: CTCTATCAAGGGATCCTTCAAGCTCTCCAGTGTGTT...GCCACTAGGATCCCAGAAGGAAACTAAATTCATCCAAGGTAGTTCAATTAAATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304620.5
ENST00000359499.8
CDS CCA 72 bp GTTCTGATCTCCTGGGTCTCCTGCGTCCGCACCACCTaGAACTGGGGATCGATCTCAATCTTCAGTGGGGTC +
Preference number: 6 (lower is better)
Translates to: VLISWVSCVRTT*NWGSISIFSGV
Trigger: GACCCCACTGAAGATTGAGATCGATCCCCAGTTCCAGGTGGTGCGGACGCAGGAGACCCAGGAGATCAGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000304620.5
CDS CAA 72 bp ACCCAGAATCTAAGCCACCCTAACAGACTTCCCCTCTaGGCCATTCTCCTCATGGCCACAGGAAGCCTGCCC +
Preference number: 6 (lower is better)
Translates to: TQNLSHPNRLPL*AILLMATGSLP
Trigger: GGGCAGGCTTCCTGTGGCCATGAGGAGAATGGCCAAGAGGGGAAGTCTGTTAGGGTGGCTTAGATTCTGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000551581.1
CDS CCA 72 bp CACCACCTGGAACTGGGGATCGATCTCAATCTTCAGTaGGGTCAGCAGATTCTGGTTGATGGTCACTTCTTG +
Preference number: 6 (lower is better)
Translates to: HHLELGIDLNLQ*GQQILVDGHFL
Trigger: CAAGAAGTGACCATCAACCAGAATCTGCTGACCCCACTGAAGATTGAGATCGATCCCCAGTTCCAGGTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000304620.5