Pregenerated sensors for KRT6C (Homo sapiens)
Ensembl gene IDs: ENSG00000170465Ensembl transcript IDs: ENST00000553087.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCATCTGTAGGGGAGGTGGTAACTTTTTACCTGACTGTTGAGACCTaGCCTTGCTTGTGCCTCAGAGGCTCATCCTCTTGGGTGGGATTC | + |
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Preference number: 5 (lower is better) Translates to: PSVGEVVTFYLTVET*PCLCLRGSSSWVGF Trigger: GAATCCCACCCAAGAGGATGAGCCTCTGAGGCACAAGCAAGGCCAGGTCTCAACAGTCAGGTAAAAAGTTACCACCTCCCCTACAGATGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000553087.1 |
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| CDS GCA 90 bp | GTAGGGGAGGTGGTAACTTTTTACCTGACTGTTGAGACCTGGCCTTaGTTGTGCCTCAGAGGCTCATCCTCTTGGGTGGGATTCACTTCT | + |
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Preference number: 5 (lower is better) Translates to: VGEVVTFYLTVETWP*LCLRGSSSWVGFTS Trigger: AGAAGTGAATCCCACCCAAGAGGATGAGCCTCTGAGGCACAAGCAAGGCCAGGTCTCAACAGTCAGGTAAAAAGTTACCACCTCCCCTAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000553087.1 |
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| CDS TCA 90 bp | ATTATGACCATCTGTAGGGGAGGTGGTAACTTTTTACCTGACTGTTaGGACCTGGCCTTGCTTGTGCCTCAGAGGCTCATCCTCTTGGGT | + |
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Preference number: 5 (lower is better) Translates to: IMTICRGGGNFLPDC*DLALLVPQRLILLG Trigger: ACCCAAGAGGATGAGCCTCTGAGGCACAAGCAAGGCCAGGTCTCAACAGTCAGGTAAAAAGTTACCACCTCCCCTACAGATGGTCATAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000553087.1 |
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| CDS GCA 90 bp | GAGGTGGTAACTTTTTACCTGACTGTTGAGACCTGGCCTTGCTTGTaGCTCAGAGGCTCATCCTCTTGGGTGGGATTCACTTCTCTATTG | + |
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Preference number: 5 (lower is better) Translates to: EVVTFYLTVETWPCL*LRGSSSWVGFTSLL Trigger: CAATAGAGAAGTGAATCCCACCCAAGAGGATGAGCCTCTGAGGCACAAGCAAGGCCAGGTCTCAACAGTCAGGTAAAAAGTTACCACCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000553087.1 |
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| CDS CCA 90 bp | GCCCCTTGTATTAAGCACCCGCATGAGAATGTGCGTTGCATCTTATaGGAGACACTACAATGGACCCAAAAACAAGCCATATGGAAGATG | + |
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Preference number: 5 (lower is better) Translates to: APCIKHPHENVRCIL*ETLQWTQKQAIWKM Trigger: CATCTTCCATATGGCTTGTTTTTGGGTCCATTGTAGTGTCTCCCATAAGATGCAACGCACATTCTCATGCGGGTGCTTAATACAAGGGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000553087.1 |
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| CDS GCA 90 bp | AAGTCCTATGCCCCTTGTATTAAGCACCCGCATGAGAATGTGCGTTaGATCTTATGGGAGACACTACAATGGACCCAAAAACAAGCCATA | + |
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Preference number: 5 (lower is better) Translates to: KSYAPCIKHPHENVR*ILWETLQWTQKQAI Trigger: TATGGCTTGTTTTTGGGTCCATTGTAGTGTCTCCCATAAGATGCAACGCACATTCTCATGCGGGTGCTTAATACAAGGGGCATAGGACTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000553087.1 |
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| CDS CCA 90 bp | CACCCGCATGAGAATGTGCGTTGCATCTTATGGGAGACACTACAATaGACCCAAAAACAAGCCATATGGAAGATGAATGCTCGGTTTGTA | + |
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Preference number: 5 (lower is better) Translates to: HPHENVRCILWETLQ*TQKQAIWKMNARFV Trigger: TACAAACCGAGCATTCATCTTCCATATGGCTTGTTTTTGGGTCCATTGTAGTGTCTCCCATAAGATGCAACGCACATTCTCATGCGGGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000553087.1 |
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| CDS CCA 72 bp | GGGGAGGTGGTAACTTTTTACCTGACTGTTGAGACCTaGCCTTGCTTGTGCCTCAGAGGCTCATCCTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: GEVVTFYLTVET*PCLCLRGSSSW Trigger: CCAAGAGGATGAGCCTCTGAGGCACAAGCAAGGCCAGGTCTCAACAGTCAGGTAAAAAGTTACCACCTCCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000553087.1 |
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| CDS GCA 72 bp | CCTATGCCCCTTGTATTAAGCACCCGCATGAGAATGTaGGTTGCATCTTATGGGAGACACTACAATGGACCC | + |
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Preference number: 6 (lower is better) Translates to: PMPLVLSTRMRM*VASYGRHYNGP Trigger: GGGTCCATTGTAGTGTCTCCCATAAGATGCAACGCACATTCTCATGCGGGTGCTTAATACAAGGGGCATAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553087.1 |
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| CDS TCA 72 bp | GAGGCTCATCCTCTTGGGTGGGATTCACTTCTCTATTaGGTTCTCACTGAGGGCAAGAACTACACATGTTCC | + |
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Preference number: 6 (lower is better) Translates to: EAHPLGWDSLLY*VLTEGKNYTCS Trigger: GGAACATGTGTAGTTCTTGCCCTCAGTGAGAACTCAATAGAGAAGTGAATCCCACCCAAGAGGATGAGCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553087.1 |
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| CDS GCA 72 bp | GCCCCTTGTATTAAGCACCCGCATGAGAATGTGCGTTaGATCTTATGGGAGACACTACAATGGACCCAAAAA | + |
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Preference number: 6 (lower is better) Translates to: APCIKHPHENVR*ILWETLQWTQK Trigger: TTTTTGGGTCCATTGTAGTGTCTCCCATAAGATGCAACGCACATTCTCATGCGGGTGCTTAATACAAGGGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553087.1 |
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| CDS TCA 72 bp | TCCATTTGGCAATATTTGTCTAGTCTGGGAGTCAAGTaGCAAAGTCCTATGCCCCTTGTATTAAGCACCCGC | + |
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Preference number: 6 (lower is better) Translates to: SIWQYLSSLGVK*QSPMPLVLSTR Trigger: GCGGGTGCTTAATACAAGGGGCATAGGACTTTGTCACTTGACTCCCAGACTAGACAAATATTGCCAAATGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553087.1 |
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| CDS CCA 72 bp | TGGGAGACACTACAATGGACCCAAAAACAAGCCATATaGAAGATGAATGCTCGGTTTGTACTGAGTGCTGTT | + |
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Preference number: 6 (lower is better) Translates to: WETLQWTQKQAI*KMNARFVLSAV Trigger: AACAGCACTCAGTACAAACCGAGCATTCATCTTCCATATGGCTTGTTTTTGGGTCCATTGTAGTGTCTCCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000553087.1 |
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| CDS CCA 72 bp | ATTAAGCACCCGCATGAGAATGTGCGTTGCATCTTATaGGAGACACTACAATGGACCCAAAAACAAGCCATA | + |
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Preference number: 6 (lower is better) Translates to: IKHPHENVRCIL*ETLQWTQKQAI Trigger: TATGGCTTGTTTTTGGGTCCATTGTAGTGTCTCCCATAAGATGCAACGCACATTCTCATGCGGGTGCTTAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000553087.1 |
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