Pregenerated sensors for KRT6B (Homo sapiens)
Ensembl gene IDs: ENSG00000185479Ensembl transcript IDs: ENST00000252252.4
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGTATTGATGAGAAGAAAAGTGAGGGCATCCCAGCTCTACCCGGGAGGGCAGGGGGAGGACAAGCAACCTaGGGAGAGGGCTCTGCTGCC | + |
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Preference number: 2 (lower is better) Translates to: GIDEKKSEGIPALPGRAGGGQAT*GEGSAA Trigger: GGCAGCAGAGCCCTCTCCTCAGGTTGCTTGTCCTCC...CCCTGCCCTCCCGGGTAGAGCTGGGATGCCCTCACTTTTCTTCTCATCAATACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000252252.4 |
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| CDS-3UTR TCA 90 bp | GGTATTGATGAGAAGAAAAGTGAGGGCATCCCAGCTCTACCCGGGAGGGCAGGGAGTGCTGATAACTGTTaGCTTGATGGTAAGCAACAG | + |
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Preference number: 4 (lower is better) Translates to: GIDEKKSEGIPALPGRAGSADNC*LDGKQQ Trigger: CTGTTGCTTACCATCAAGTCAACAGTTATCAGCACT...CCCTGCCCTCCCGGGTAGAGCTGGGATGCCCTCACTTTTCTTCTCATCAATACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000252252.4 |
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| CDS-3UTR TCA 90 bp | CCTGTAATAATACGGGAACTAAAAAGGACATTCGCATGTCTGAGTGCTGATAACGGAGGACAAGCAACCTaGGGAGAGGGCTCTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: PVIIRELKRTFACLSADNGGQAT*GEGSAA Trigger: GGCAGCAGAGCCCTCTCCTCAGGTTGCTTGTCCTCC...GTTATCAGCACTCAGACATGCGAATGTCCTTTTTAGTTCCCGTATTATTACAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000252252.4 |
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| CDS-3UTR TCA 90 bp | GTGGAACAGGTATTGATGAGAAGAAAAGTGAGGGCATCCCAGCTCTACCCGGGAGGACATTCGCATGTCTaGGTGCTGATAACTGTTGAC | + |
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Preference number: 4 (lower is better) Translates to: VEQVLMRRKVRASQLYPGGHSHV*VLITVD Trigger: GTCAACAGTTATCAGCACTCAGACATGCGAATGTCC...TCCCGGGTAGAGCTGGGATGCCCTCACTTTTCTTCTCATCAATACCTGTTCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000252252.4 |
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| CDS-3UTR CCA 90 bp | CCTGTAATAATACGGGAACTAAAAAGGACATTCGCATGTCTGAGTGCTGATAACTGTGGGACTGAGAGCTaGCGGCAGCACTTCAGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: PVIIRELKRTFACLSADNCGTES*RQHFSA Trigger: AGCACTGAAGTGCTGCCGCCAGCTCTCAGTCCCACA...GTTATCAGCACTCAGACATGCGAATGTCCTTTTTAGTTCCCGTATTATTACAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000252252.4 |
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| CDS-3UTR TCA 90 bp | CCTGTAATAATACGGGAACTAAAAAGGACATTCGCATGTCTGAGTGCTGATAACCAGCTGGACCTAGACTaGGTTTCAGTTCTTATGGGG | + |
|
Preference number: 4 (lower is better) Translates to: PVIIRELKRTFACLSADNQLDLD*VSVLMG Trigger: CCCCATAAGAACTGAAACTCAGTCTAGGTCCAGCTG...GTTATCAGCACTCAGACATGCGAATGTCCTTTTTAGTTCCCGTATTATTACAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000252252.4 |
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| CDS-3UTR GCA 90 bp | CCTGTAATAATACGGGAACTAAAAAGGACATTCGCATGTCTGAGTGCTGATAACCATCTGGGACAGCTCTaGATCATACAAGGCTCTCAG | + |
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Preference number: 4 (lower is better) Translates to: PVIIRELKRTFACLSADNHLGQL*IIQGSQ Trigger: CTGAGAGCCTTGTATGATGCAGAGCTGTCCCAGATG...GTTATCAGCACTCAGACATGCGAATGTCCTTTTTAGTTCCCGTATTATTACAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000252252.4 |
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| CDS-3UTR GCA 90 bp | CCTGTAATAATACGGGAACTAAAAAGGACATTCGCATGTCTGAGTGCTGATAACCTGGAGACGGTGGACTaGACTACAGAGATGTTGACT | + |
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Preference number: 4 (lower is better) Translates to: PVIIRELKRTFACLSADNLETVD*TTEMLT Trigger: AGTCAACATCTCTGTAGTGCAGTCCACCGTCTCCAG...GTTATCAGCACTCAGACATGCGAATGTCCTTTTTAGTTCCCGTATTATTACAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000252252.4 |
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| CDS-3UTR CCA 90 bp | CCTGTAATAATACGGGAACTAAAAAGGACATTCGCATGTCTGAGTGCTGATAACGAGTTTCAGTTCTTATaGGGATATAGGTCATTTTCT | + |
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Preference number: 4 (lower is better) Translates to: PVIIRELKRTFACLSADNEFQFL*GYRSFS Trigger: AGAAAATGACCTATATCCCCATAAGAACTGAAACTC...GTTATCAGCACTCAGACATGCGAATGTCCTTTTTAGTTCCCGTATTATTACAGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000252252.4 |
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| CDS-3UTR CAA 90 bp | AGCAACAGGAGCTCAGTGGAACAGGTATTGATGAGAAGAAAAGTGAGGGCATCCATGGCGGCCTGTAGGTaGGCACACTGCTTCTTGACG | + |
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Preference number: 5 (lower is better) Translates to: SNRSSVEQVLMRRKVRASMAACR*AHCFLT Trigger: CGTCAAGAAGCAGTGTGCCAACCTACAGGCCGCCAT...GGATGCCCTCACTTTTCTTCTCATCAATACCTGTTCCACTGAGCTCCTGTTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000252252.4 |
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| CDS-3UTR CAA 90 bp | GTGGAACAGGTATTGATGAGAAGAAAAGTGAGGGCATCCCAGCTCTACCCGGGACTGATAACTGTTGACTaGATGGTAAGCAACAGGAGC | + |
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Preference number: 5 (lower is better) Translates to: VEQVLMRRKVRASQLYPGLITVD*MVSNRS Trigger: GCTCCTGTTGCTTACCATCAAGTCAACAGTTATCAG...TCCCGGGTAGAGCTGGGATGCCCTCACTTTTCTTCTCATCAATACCTGTTCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000252252.4 |
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| CDS-3UTR CAA 90 bp | CCTGTAATAATACGGGAACTAAAAAGGACATTCGCATGTCTGAGTGCTGATAACGAGGTGGTGGTGTACTaGATGGTGGAACTGCCGCCT | + |
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Preference number: 5 (lower is better) Translates to: PVIIRELKRTFACLSADNEVVVY*MVELPP Trigger: AGGCGGCAGTTCCACCATCAAGTACACCACCACCTC...GTTATCAGCACTCAGACATGCGAATGTCCTTTTTAGTTCCCGTATTATTACAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000252252.4 |
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| CDS-3UTR CAA 90 bp | CCTGTAATAATACGGGAACTAAAAAGGACATTCGCATGTCTGAGTGCTGATAACGCAGCTCCTCGTACTTaGTCTGGTACCAGGACTCAG | + |
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Preference number: 5 (lower is better) Translates to: PVIIRELKRTFACLSADNAAPRT*SGTRTQ Trigger: CTGAGTCCTGGTACCAGACAAAGTACGAGGAGCTGC...GTTATCAGCACTCAGACATGCGAATGTCCTTTTTAGTTCCCGTATTATTACAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000252252.4 |
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