RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KRT36 (Homo sapiens)

Ensembl gene IDs: ENSG00000126337

Ensembl transcript IDs: ENST00000328119.10, ENST00000328119.11, ENST00000393986.2

Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp CGTAGGGGGACCCCTCTAGAGAAGGGCAGGGTCGTTAAGCCTCCAGGAGCCACACTGTGGTCAGGGCCCTaGCCTGGTGGACCAAGTGGG +
Preference number: 2 (lower is better)
Translates to: RRGTPLEKGRVVKPPGATLWSGP*PGGPSG
Trigger: CCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAG...TGTGGCTCCTGGAGGCTTAACGACCCTGCCCTTCTCTAGAGGGGTCCCCCTACG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000328119.10
ENST00000393986.2
3UTR-3UTR GCA 90 bp CCTGCTAAGCGTAGGGGGACCCCTCTAGAGAAGGGCAGGGTCGTTAAGCCTCCACTGTGGTCAGGGCCCTaGCCTGGTGGACCAAGTGGG +
Preference number: 2 (lower is better)
Translates to: PAKRRGTPLEKGRVVKPPLWSGP*PGGPSG
Trigger: CCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAG...TGGAGGCTTAACGACCCTGCCCTTCTCTAGAGGGGTCCCCCTACGCTTAGCAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000328119.10
ENST00000393986.2
3UTR CAA 90 bp CCAGGAGAACACACTTTATTGGGTAAATTTCCAGGAAACCTGGTTTaGCATGGCGTAAAAGCACAGTTAAGTCCGGAAACACAATACGGG +
Preference number: 2 (lower is better)
Translates to: PGEHTLLGKFPGNLV*HGVKAQLSPETQYG
Trigger: CCCGTATTGTGTTTCCGGACTTAACTGTGCTTTTACGCCATGCAAAACCAGGTTTCCTGGAAATTTACCCAATAAAGTGTGTTCTCCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000328119.10
ENST00000393986.2
CDS-3UTR GCA 90 bp AGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGTGGGCTCACAGCGGGCGGGACTaGACGTGCTCCCTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: RGVLLPVVRALPWWTKWAHSGRD*TCSLEE
Trigger: CTCCTCCAGGGAGCACGTGCAGTCCCGCCCGCTGTG...AGCCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CCA 90 bp ACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGTGGGCCCTGGTGGACCAAGTaGGCTGTCACAGCGGGCGGG +
Preference number: 4 (lower is better)
Translates to: TGVSSFLWSGPCPGGPSGPWWTK*AVTAGG
Trigger: CCCGCCCGCTGTGACAGCCCACTTGGTCCACCAGGG...CCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR GCA 90 bp ACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGTGGGTGGTGCGGATCTGAGTaGCAACCTGGGGAGCCGGGG +
Preference number: 4 (lower is better)
Translates to: TGVSSFLWSGPCPGGPSGWCGSE*QPGEPG
Trigger: CCCCGGCTCCCCAGGTTGGCACTCAGATCCGCACCA...CCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CCA 90 bp AGCCACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGGTCAGGGCCCTGCCCTaGTGGACCAAGTGGGCTGTC +
Preference number: 4 (lower is better)
Translates to: SHRGVLLPVVRALPWWTKVRALP*WTKWAV
Trigger: GACAGCCCACTTGGTCCACCAGGGCAGGGCCCTGAC...CTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGTGGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR TCA 90 bp GGGACCCCTCTAGAGAAGGGCAGGGTCGTTAAGCCTCCAGGAGCCACAGGGGTGCCAAGGGAAGGGCCCTaGGCCGGGACTCAGCGAGAA +
Preference number: 4 (lower is better)
Translates to: GTPLEKGRVVKPPGATGVPREGP*AGTQRE
Trigger: TTCTCGCTGAGTCCCGGCTCAGGGCCCTTCCCTTGG...CACCCCTGTGGCTCCTGGAGGCTTAACGACCCTGCCCTTCTCTAGAGGGGTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR GCA 90 bp AGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGTGGGCTGGGCGGGACTGCACGTaGTCCCTGGAGGAGATGACT +
Preference number: 4 (lower is better)
Translates to: RGVLLPVVRALPWWTKWAGRDCT*SLEEMT
Trigger: AGTCATCTCCTCCAGGGAGCACGTGCAGTCCCGCCC...AGCCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR GCA 90 bp GGGACCCCTCTAGAGAAGGGCAGGGTCGTTAAGCCTCCAGGAGCCACAGGGGTGCTGTGGTCAGGGCCCTaGCCTGGTGGACCAAGTGGG +
Preference number: 4 (lower is better)
Translates to: GTPLEKGRVVKPPGATGVLWSGP*PGGPSG
Trigger: CCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAG...CACCCCTGTGGCTCCTGGAGGCTTAACGACCCTGCCCTTCTCTAGAGGGGTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CCA 90 bp AGCCACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGAGGGCCCTGCCCTGGTaGACCAAGTGGGCTGTCACA +
Preference number: 4 (lower is better)
Translates to: SHRGVLLPVVRALPWWTKRALPW*TKWAVT
Trigger: TGTGACAGCCCACTTGGTCCACCAGGGCAGGGCCCT...CTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGTGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CCA 90 bp AGCCACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGGCCGTGGCACAAGGTTaGGGAGGAAGCTTGCAGTCC +
Preference number: 4 (lower is better)
Translates to: SHRGVLLPVVRALPWWTKAVAQG*GGSLQS
Trigger: GGACTGCAAGCTTCCTCCCCAACCTTGTGCCACGGC...CTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGTGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR GCA 90 bp GAGCCACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGTTGGGGAGGAAGCTTaGAGTCCTCTCCCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: EPQGCPPSCGQGPALVDQVGEEA*SPLPPA
Trigger: TGCTGGAGGGAGAGGACTGCAAGCTTCCTCCCCAAC...TTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGTGGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CCA 90 bp AGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGTGGGCTAACTCGTACCACTCCTaGATGCGGCTCTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: RGVLLPVVRALPWWTKWANSYHS*MRLSSS
Trigger: GGAGCTGGAGAGCCGCATCCAGGAGTGGTACGAGTT...AGCCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CCA 90 bp AGCCACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGCAGGCTTGCATGCCGTaGCACAAGGTTGGGGAGGAA +
Preference number: 4 (lower is better)
Translates to: SHRGVLLPVVRALPWWTKQACMP*HKVGEE
Trigger: TTCCTCCCCAACCTTGTGCCACGGCATGCAAGCCTG...CTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGTGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CCA 90 bp GAGCCACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAATTCAGCTCCTCAGTCTaGGTGTTGAACCAGGCCTCC +
Preference number: 4 (lower is better)
Translates to: EPQGCPPSCGQGPALVDQFSSSV*VLNQAS
Trigger: GGAGGCCTGGTTCAACACCCAGACTGAGGAGCTGAA...TTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGTGGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CCA 90 bp AGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGTGGGCTAGTCGGTCCCCAAGTTaGCAACGGAGTACACTGACT +
Preference number: 4 (lower is better)
Translates to: RGVLLPVVRALPWWTKWASRSPS*QRSTLT
Trigger: AGTCAGTGTACTCCGTTGCCAACTTGGGGACCGACT...AGCCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR TCA 90 bp AGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGTGGGCTCAGATGTATGGGATCTaGAACTCGTACCACTCCTGG +
Preference number: 4 (lower is better)
Translates to: RGVLLPVVRALPWWTKWAQMYGI*NSYHSW
Trigger: CCAGGAGTGGTACGAGTTTCAGATCCCATACATCTG...AGCCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CCA 90 bp CGTAGGGGGACCCCTCTAGAGAAGGGCAGGGTCGTTAAGCCTCCAGGAGCCACACGGTTTCGGCCAGGGTaGATTCCAAGGAATTCCGCA +
Preference number: 4 (lower is better)
Translates to: RRGTPLEKGRVVKPPGATRFRPG*IPRNSA
Trigger: TGCGGAATTCCTTGGAATCCACCCTGGCCGAAACCG...TGTGGCTCCTGGAGGCTTAACGACCCTGCCCTTCTCTAGAGGGGTCCCCCTACG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CCA 90 bp AAGCGTAGGGGGACCCCTCTAGAGAAGGGCAGGGTCGTTAAGCCTCCAGGAGCCTCAGGAGGGACACTGTaGACCAGAGAGGTGCCTCTA +
Preference number: 4 (lower is better)
Translates to: KRRGTPLEKGRVVKPPGASGGTL*TREVPL
Trigger: TAGAGGCACCTCTCTGGTCCACAGTGTCCCTCCTGA...GGCTCCTGGAGGCTTAACGACCCTGCCCTTCTCTAGAGGGGTCCCCCTACGCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CCA 90 bp AGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGTGGGCTGTCTGGGCAGATGTATaGGATCTGAAACTCGTACCA +
Preference number: 4 (lower is better)
Translates to: RGVLLPVVRALPWWTKWAVWADV*DLKLVP
Trigger: TGGTACGAGTTTCAGATCCCATACATCTGCCCAGAC...AGCCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CCA 90 bp CGTAGGGGGACCCCTCTAGAGAAGGGCAGGGTCGTTAAGCCTCCAGGAGCCACAGTGCCTCTAGGGTTGTaGGGAGAGGAATGTACCTTC +
Preference number: 4 (lower is better)
Translates to: RRGTPLEKGRVVKPPGATVPLGL*GEECTF
Trigger: GAAGGTACATTCCTCTCCCCACAACCCTAGAGGCAC...TGTGGCTCCTGGAGGCTTAACGACCCTGCCCTTCTCTAGAGGGGTCCCCCTACG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR GCA 90 bp CCTGCTAAGCGTAGGGGGACCCCTCTAGAGAAGGGCAGGGTCGTTAAGCCTCCAAATAACAGGCTTGCATaGCGTGGCACAAGGTTGGGG +
Preference number: 4 (lower is better)
Translates to: PAKRRGTPLEKGRVVKPPNNRLA*RGTRLG
Trigger: CCCCAACCTTGTGCCACGGCATGCAAGCCTGTTATT...TGGAGGCTTAACGACCCTGCCCTTCTCTAGAGGGGTCCCCCTACGCTTAGCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CCA 90 bp AGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGTGGGCTAGCAGGATCTTCTGCTaGAAATCTTCGATGGTCTTG +
Preference number: 4 (lower is better)
Translates to: RGVLLPVVRALPWWTKWASRIFC*KSSMVL
Trigger: CAAGACCATCGAAGATTTCCAGCAGAAGATCCTGCT...AGCCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CCA 90 bp CGTAGGGGGACCCCTCTAGAGAAGGGCAGGGTCGTTAAGCCTCCAGGAGCCACAAAACCTGGTTTTGCATaGCGTAAAAGCACAGTTAAG +
Preference number: 4 (lower is better)
Translates to: RRGTPLEKGRVVKPPGATKPGFA*RKSTVK
Trigger: CTTAACTGTGCTTTTACGCCATGCAAAACCAGGTTT...TGTGGCTCCTGGAGGCTTAACGACCCTGCCCTTCTCTAGAGGGGTCCCCCTACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR TCA 90 bp TTTCCAGGAAACCTGGTTTTGCATGGCGTAAAAGCACAGTTAAGTCCGGAAACAGTGATGGTGCGGATCTaGGTGCCAACCTGGGGAGCC +
Preference number: 4 (lower is better)
Translates to: FPGNLVLHGVKAQLSPETVMVRI*VPTWGA
Trigger: GGCTCCCCAGGTTGGCACTCAGATCCGCACCATCAC...TGTTTCCGGACTTAACTGTGCTTTTACGCCATGCAAAACCAGGTTTCCTGGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR TCA 90 bp TTTCCAGGAAACCTGGTTTTGCATGGCGTAAAAGCACAGTTAAGTCCGGAAACACAGAGAGGCCCGACCTaGGCATCAGGAGGGACACTG +
Preference number: 4 (lower is better)
Translates to: FPGNLVLHGVKAQLSPETQRGPT*ASGGTL
Trigger: CAGTGTCCCTCCTGATGCTCAGGTCGGGCCTCTCTG...TGTTTCCGGACTTAACTGTGCTTTTACGCCATGCAAAACCAGGTTTCCTGGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR TCA 90 bp TTTCCAGGAAACCTGGTTTTGCATGGCGTAAAAGCACAGTTAAGTCCGGAAACACCTCCAGGATCTTGTTaGGATCCACTGGGGGAGCAG +
Preference number: 4 (lower is better)
Translates to: FPGNLVLHGVKAQLSPETPPGSC*DPLGEQ
Trigger: CTGCTCCCCCAGTGGATCTCAACAAGATCCTGGAGG...TGTTTCCGGACTTAACTGTGCTTTTACGCCATGCAAAACCAGGTTTCCTGGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR TCA 90 bp TTTCCAGGAAACCTGGTTTTGCATGGCGTAAAAGCACAGTTAAGTCCGGAAACACCTCAGTCTGGGTGTTaGACCAGGCCTCCACATCTC +
Preference number: 4 (lower is better)
Translates to: FPGNLVLHGVKAQLSPETPQSGC*TRPPHL
Trigger: GAGATGTGGAGGCCTGGTTCAACACCCAGACTGAGG...TGTTTCCGGACTTAACTGTGCTTTTACGCCATGCAAAACCAGGTTTCCTGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR TCA 90 bp TTTCCAGGAAACCTGGTTTTGCATGGCGTAAAAGCACAGTTAAGTCCGGAAACAGGCAACGGAGTACACTaGCTTCCTCCTCGTGATTCT +
Preference number: 4 (lower is better)
Translates to: FPGNLVLHGVKAQLSPETGNGVH*LPPRDS
Trigger: AGAATCACGAGGAGGAAGTCAGTGTACTCCGTTGCC...TGTTTCCGGACTTAACTGTGCTTTTACGCCATGCAAAACCAGGTTTCCTGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR GCA 90 bp TTTCCAGGAAACCTGGTTTTGCATGGCGTAAAAGCACAGTTAAGTCCGGAAACAGTCAGCAGGATCTTCTaGTGGAAATCTTCGATGGTC +
Preference number: 4 (lower is better)
Translates to: FPGNLVLHGVKAQLSPETVSRIF*WKSSMV
Trigger: GACCATCGAAGATTTCCAGCAGAAGATCCTGCTGAC...TGTTTCCGGACTTAACTGTGCTTTTACGCCATGCAAAACCAGGTTTCCTGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393986.2
3UTR CAA 72 bp CACACTTTATTGGGTAAATTTCCAGGAAACCTGGTTTaGCATGGCGTAAAAGCACAGTTAAGTCCGGAAACA +
Preference number: 4 (lower is better)
Translates to: HTLLGKFPGNLV*HGVKAQLSPET
Trigger: TGTTTCCGGACTTAACTGTGCTTTTACGCCATGCAAAACCAGGTTTCCTGGAAATTTACCCAATAAAGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000328119.10
ENST00000393986.2
CDS GCA 90 bp CCTCCAGGAGCCACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTaGCCTGGTGGACCAAGTGGGCTGTCACAGCGGGCGGGACTGCAC +
Preference number: 5 (lower is better)
Translates to: PPGATGVSSFLWSGP*PGGPSGLSQRAGLH
Trigger: GTGCAGTCCCGCCCGCTGTGACAGCCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGTGGCTCCTGGAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000328119.11
ENST00000393986.2
CDS CCA 90 bp AGCCACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTaGACCAAGTGGGCTGTCACAGCGGGCGGGACTGCACGTGCTCCC +
Preference number: 5 (lower is better)
Translates to: SHRGVLLPVVRALPW*TKWAVTAGGTARAP
Trigger: GGGAGCACGTGCAGTCCCGCCCGCTGTGACAGCCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGTGGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000328119.11
ENST00000393986.2
CDS CCA 90 bp GGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGTaGGCTGTCACAGCGGGCGGGACTGCACGTGCTCCCTGGAGGAGA +
Preference number: 5 (lower is better)
Translates to: GVLLPVVRALPWWTK*AVTAGGTARAPWRR
Trigger: TCTCCTCCAGGGAGCACGTGCAGTCCCGCCCGCTGTGACAGCCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000328119.11
ENST00000393986.2
CDS CCA 90 bp AGGAGCCACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTaGTGGACCAAGTGGGCTGTCACAGCGGGCGGGACTGCACGTGCT +
Preference number: 5 (lower is better)
Translates to: RSHRGVLLPVVRALP*WTKWAVTAGGTARA
Trigger: AGCACGTGCAGTCCCGCCCGCTGTGACAGCCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGTGGCTCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000328119.11
ENST00000393986.2
CDS GCA 90 bp GGCCCTGCCCTGGTGGACCAAGTGGGCTGTCACAGCGGGCGGGACTaGACGTGCTCCCTGGAGGAGATGACTTTCCCATCTCTGATCTCC +
Preference number: 5 (lower is better)
Translates to: GPALVDQVGCHSGRD*TCSLEEMTFPSLIS
Trigger: GGAGATCAGAGATGGGAAAGTCATCTCCTCCAGGGAGCACGTGCAGTCCCGCCCGCTGTGACAGCCCACTTGGTCCACCAGGGCAGGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000328119.11
ENST00000393986.2
CDS-3UTR CAA 90 bp GAGCCACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAATGCCGTGGCACAAGGTaGGGGAGGAAGCTTGCAGTC +
Preference number: 5 (lower is better)
Translates to: EPQGCPPSCGQGPALVDQCRGTR*GRKLAV
Trigger: GACTGCAAGCTTCCTCCCCAACCTTGTGCCACGGCA...TTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGTGGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS GCA 90 bp GCCCTGGTGGACCAAGTGGGCTGTCACAGCGGGCGGGACTGCACGTaGTCCCTGGAGGAGATGACTTTCCCATCTCTGATCTCCTCGGTG +
Preference number: 5 (lower is better)
Translates to: ALVDQVGCHSGRDCT*SLEEMTFPSLISSV
Trigger: CACCGAGGAGATCAGAGATGGGAAAGTCATCTCCTCCAGGGAGCACGTGCAGTCCCGCCCGCTGTGACAGCCCACTTGGTCCACCAGGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000328119.11
ENST00000393986.2
CDS-3UTR CAA 90 bp CGTAGGGGGACCCCTCTAGAGAAGGGCAGGGTCGTTAAGCCTCCAGGAGCCACAGGTTGGGGAGGAAGCTaGCAGTCCTCTCCCTCCAGC +
Preference number: 5 (lower is better)
Translates to: RRGTPLEKGRVVKPPGATGWGGS*QSSPSS
Trigger: GCTGGAGGGAGAGGACTGCAAGCTTCCTCCCCAACC...TGTGGCTCCTGGAGGCTTAACGACCCTGCCCTTCTCTAGAGGGGTCCCCCTACG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CAA 90 bp AGCCACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGGAGGTGCCTCTAGGGTaGTGGGGAGAGGAATGTACC +
Preference number: 5 (lower is better)
Translates to: SHRGVLLPVVRALPWWTKEVPLG*WGEECT
Trigger: GGTACATTCCTCTCCCCACAACCCTAGAGGCACCTC...CTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGTGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS GCA 90 bp GCAGGAGCCCACAGAACGGATGGAGGACACCCGAGAGATGCCGCCTaGTGTGCCACAGAGGCCCTTGATAGACCCAGTGGAGAAGGTAGG +
Preference number: 5 (lower is better)
Translates to: AGAHRTDGGHPRDAA*CATEALDRPSGEGR
Trigger: CCTACCTTCTCCACTGGGTCTATCAAGGGCCTCTGTGGCACAGCAGGCGGCATCTCTCGGGTGTCCTCCATCCGTTCTGTGGGCTCCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000328119.11
CDS-3UTR CAA 90 bp ACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGTGGGTCCTCCAGGATCTTGTaGAGATCCACTGGGGGAGCA +
Preference number: 5 (lower is better)
Translates to: TGVSSFLWSGPCPGGPSGSSRIL*RSTGGA
Trigger: TGCTCCCCCAGTGGATCTCAACAAGATCCTGGAGGA...CCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CAA 90 bp ACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGTGGGTCCTCAGTCTGGGTGTaGAACCAGGCCTCCACATCT +
Preference number: 5 (lower is better)
Translates to: TGVSSFLWSGPCPGGPSGSSVWV*NQASTS
Trigger: AGATGTGGAGGCCTGGTTCAACACCCAGACTGAGGA...CCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS CCA 90 bp GCATCAGGAGGGACACTGTGGACCAGAGAGGTGCCTCTAGGGTTGTaGGGAGAGGAATGTACCTTCCCTGGAGCAGGTGACCAGCTCGTC +
Preference number: 5 (lower is better)
Translates to: ASGGTLWTREVPLGL*GEECTFPGAGDQLV
Trigger: GACGAGCTGGTCACCTGCTCCAGGGAAGGTACATTCCTCTCCCCACAACCCTAGAGGCACCTCTCTGGTCCACAGTGTCCCTCCTGATGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CAA 90 bp CCTGCTAAGCGTAGGGGGACCCCTCTAGAGAAGGGCAGGGTCGTTAAGCCTCCACAGTCGGTCCCCAAGTaGGCAACGGAGTACACTGAC +
Preference number: 5 (lower is better)
Translates to: PAKRRGTPLEKGRVVKPPQSVPK*ATEYTD
Trigger: GTCAGTGTACTCCGTTGCCAACTTGGGGACCGACTG...TGGAGGCTTAACGACCCTGCCCTTCTCTAGAGGGGTCCCCCTACGCTTAGCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CAA 90 bp AGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGTGGGCTATATCCTCCAGGATCTaGTTGAGATCCACTGGGGGA +
Preference number: 5 (lower is better)
Translates to: RGVLLPVVRALPWWTKWAISSRI*LRSTGG
Trigger: TCCCCCAGTGGATCTCAACAAGATCCTGGAGGATAT...AGCCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CAA 90 bp AGCCACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGACTCTAATAACAGGCTaGCATGCCGTGGCACAAGGT +
Preference number: 5 (lower is better)
Translates to: SHRGVLLPVVRALPWWTKTLITG*HAVAQG
Trigger: ACCTTGTGCCACGGCATGCAAGCCTGTTATTAGAGT...CTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGTGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CAA 90 bp AGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGTGGGCTCCAGGAAACCTGGTTTaGCATGGCGTAAAAGCACAG +
Preference number: 5 (lower is better)
Translates to: RGVLLPVVRALPWWTKWAPGNLV*HGVKAQ
Trigger: CTGTGCTTTTACGCCATGCAAAACCAGGTTTCCTGG...AGCCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CAA 90 bp AAGCGTAGGGGGACCCCTCTAGAGAAGGGCAGGGTCGTTAAGCCTCCAGGAGCCCCTTTTTCCTTATTGTaGACTGCACAGCCAACCCCC +
Preference number: 5 (lower is better)
Translates to: KRRGTPLEKGRVVKPPGAPFSLL*TAQPTP
Trigger: GGGGGTTGGCTGTGCAGTCAACAATAAGGAAAAAGG...GGCTCCTGGAGGCTTAACGACCCTGCCCTTCTCTAGAGGGGTCCCCCTACGCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CAA 90 bp GAGCCACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAAATACGGGGAGTGTTTaGGTAGAAAAACCTGCTAAG +
Preference number: 5 (lower is better)
Translates to: EPQGCPPSCGQGPALVDQNTGSV*VEKPAK
Trigger: CTTAGCAGGTTTTTCTACCAAAACACTCCCCGTATT...TTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGTGGCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS-3UTR CAA 90 bp AAGCGTAGGGGGACCCCTCTAGAGAAGGGCAGGGTCGTTAAGCCTCCAGGAGCCGCTGCCCTCAGTGTCTaGCCTTTTTCCTTATTGTTG +
Preference number: 5 (lower is better)
Translates to: KRRGTPLEKGRVVKPPGAAALSV*PFSLLL
Trigger: CAACAATAAGGAAAAAGGCAAGACACTGAGGGCAGC...GGCTCCTGGAGGCTTAACGACCCTGCCCTTCTCTAGAGGGGTCCCCCTACGCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS GCA 72 bp GCCACAGGGGTGTCCTCCTTCCTGTGGTCAGGGCCCTaGCCTGGTGGACCAAGTGGGCTGTCACAGCGGGCG +
Preference number: 6 (lower is better)
Translates to: ATGVSSFLWSGP*PGGPSGLSQRA
Trigger: CGCCCGCTGTGACAGCCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACCCCTGTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000328119.11
ENST00000393986.2
CDS CCA 72 bp CTTCCTGTGGTCAGGGCCCTGCCCTGGTGGACCAAGTaGGCTGTCACAGCGGGCGGGACTGCACGTGCTCCC +
Preference number: 6 (lower is better)
Translates to: LPVVRALPWWTK*AVTAGGTARAP
Trigger: GGGAGCACGTGCAGTCCCGCCCGCTGTGACAGCCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000328119.11
ENST00000393986.2
CDS CCA 72 bp GGTGTCCTCCTTCCTGTGGTCAGGGCCCTGCCCTGGTaGACCAAGTGGGCTGTCACAGCGGGCGGGACTGCA +
Preference number: 6 (lower is better)
Translates to: GVLLPVVRALPW*TKWAVTAGGTA
Trigger: TGCAGTCCCGCCCGCTGTGACAGCCCACTTGGTCCACCAGGGCAGGGCCCTGACCACAGGAAGGAGGACACC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000328119.11
ENST00000393986.2
CDS GCA 72 bp GCCAGAGAGGCCCGACCTAGCAGAAGAGATGTACCCTaGAGCACCGGCGAGACTGGGGACCCTGCAGGAGCC +
Preference number: 6 (lower is better)
Translates to: AREARPSRRDVP*STGETGDPAGA
Trigger: GGCTCCTGCAGGGTCCCCAGTCTCGCCGGTGCTGCAGGGTACATCTCTTCTGCTAGGTCGGGCCTCTCTGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000328119.11
CDS GCA 72 bp AGATGTACCCTGCAGCACCGGCGAGACTGGGGACCCTaGAGGAGCCCACAGAACGGATGGAGGACACCCGAG +
Preference number: 6 (lower is better)
Translates to: RCTLQHRRDWGP*RSPQNGWRTPE
Trigger: CTCGGGTGTCCTCCATCCGTTCTGTGGGCTCCTGCAGGGTCCCCAGTCTCGCCGGTGCTGCAGGGTACATCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000328119.11
CDS CAA 90 bp ATGGAGGACACCCGAGAGATGCCGCCTGCTGTGCCACAGAGGCCCTaGATAGACCCAGTGGAGAAGGTAGGGGTGCAGGTCTGGGTGGCC +
Preference number: 6 (lower is better)
Translates to: MEDTREMPPAVPQRP*IDPVEKVGVQVWVA
Trigger: GGCCACCCAGACCTGCACCCCTACCTTCTCCACTGGGTCTATCAAGGGCCTCTGTGGCACAGCAGGCGGCATCTCTCGGGTGTCCTCCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000328119.11
CDS GCA 72 bp GACCAAGTGGGCTGTCACAGCGGGCGGGACTGCACGTaGTCCCTGGAGGAGATGACTTTCCCATCTCTGATC +
Preference number: 6 (lower is better)
Translates to: DQVGCHSGRDCT*SLEEMTFPSLI
Trigger: GATCAGAGATGGGAAAGTCATCTCCTCCAGGGAGCACGTGCAGTCCCGCCCGCTGTGACAGCCCACTTGGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000328119.11
ENST00000393986.2
CDS CCA 72 bp GGGACACTGTGGACCAGAGAGGTGCCTCTAGGGTTGTaGGGAGAGGAATGTACCTTCCCTGGAGCAGGTGAC +
Preference number: 6 (lower is better)
Translates to: GTLWTREVPLGL*GEECTFPGAGD
Trigger: GTCACCTGCTCCAGGGAAGGTACATTCCTCTCCCCACAACCCTAGAGGCACCTCTCTGGTCCACAGTGTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393986.2
CDS CAA 72 bp GTCAAAGGTAAAAGTCTTTCAGCTGCCCTCAGTGTCTaGCCTTTTTCCTTATTGTTGACTGCACAGCCAACC +
Preference number: 6 (lower is better)
Translates to: VKGKSLSAALSV*PFSLLLTAQPT
Trigger: GGTTGGCTGTGCAGTCAACAATAAGGAAAAAGGCAAGACACTGAGGGCAGCTGAAAGACTTTTACCTTTGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393986.2