Pregenerated sensors for KRT18 (Homo sapiens)
Ensembl gene IDs: ENSG00000111057Ensembl transcript IDs: ENST00000388837.6, ENST00000548015.1, ENST00000548496.1, ENST00000549078.5, ENST00000550600.5
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GAAGACACAGGAGCACCCACGGAGCAACGGCCCAGTGCTCAGTGGATACCAGTGGGAGAAGTGATCTCCTaGTCCCAGCACGTGTGGGTA | + |
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Preference number: 2 (lower is better) Translates to: EDTGAPTEQRPSAQWIPVGEVIS*SQHVWV Trigger: TACCCACACGTGCTGGGATCAGGAGATCACTTCTCC...CACTGGTATCCACTGAGCACTGGGCCGTTGCTCCGTGGGTGCTCCTGTGTCTTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| 3UTR-3UTR GCA 90 bp | TCCTCCAGAAAAGGGAAACTCAAGGCCAAACTTCATTTGCATACTAAGTACAGCGGAGCAACGGCCCAGTaGTCAGTGGATACCAGTGAA | + |
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Preference number: 2 (lower is better) Translates to: SSRKGKLKAKLHLHTKYSGATAQ*SVDTSE Trigger: TTCACTGGTATCCACTGAGCACTGGGCCGTTGCTCC...GCTGTACTTAGTATGCAAATGAAGTTTGGCCTTGAGTTTCCCTTTTCTGGAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| 3UTR-3UTR TCA 90 bp | AAGGGAAACTCAAGGCCAAACTTCATTTGCATACTAAGTACAGCTAGGGACAATGACTTTGGGGAGAAGTaGTCTCCTGATCCCAGCACG | + |
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Preference number: 2 (lower is better) Translates to: KGNSRPNFICILSTARDNDFGEK*SPDPST Trigger: CGTGCTGGGATCAGGAGATCACTTCTCCCCAAAGTC...ATTGTCCCTAGCTGTACTTAGTATGCAAATGAAGTTTGGCCTTGAGTTTCCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| 3UTR-3UTR GCA 90 bp | CCTGACCTCTACCTTTATCTCCAAATCACCCTCAGCCTCTTCCTCCAGAAAAGGGGACAATACTTAGTTTaGTTTCTTCAAGGGGGAGAC | + |
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Preference number: 2 (lower is better) Translates to: PDLYLYLQITLSLFLQKRGQYLV*FLQGGD Trigger: GTCTCCCCCTTGAAGAAAGCAAACTAAGTATTGTCC...CCTTTTCTGGAGGAAGAGGCTGAGGGTGATTTGGAGATAAAGGTAGAGGTCAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| 3UTR TCA 72 bp | CCACGGAGCAACGGCCCAGTGCTCAGTGGATACCAGTaGACAGACACATGGGGTGCTTCCAAAAGCTCAGAC | + |
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Preference number: 3 (lower is better) Translates to: PRSNGPVLSGYQ*TDTWGASKSSD Trigger: GTCTGAGCTTTTGGAAGCACCCCATGTGTCTGTTCACTGGTATCCACTGAGCACTGGGCCGTTGCTCCGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| 3UTR-3UTR CAA 90 bp | AAGGGAAACTCAAGGCCAAACTTCATTTGCATACTAAGTACAGCTAGGGACAATGTAACTGTTACTCCCTaGAAGACACAGGAGCACCCA | + |
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Preference number: 3 (lower is better) Translates to: KGNSRPNFICILSTARDNVTVTP*KTQEHP Trigger: TGGGTGCTCCTGTGTCTTCAAGGGAGTAACAGTTAC...ATTGTCCCTAGCTGTACTTAGTATGCAAATGAAGTTTGGCCTTGAGTTTCCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| CDS-3UTR CCA 90 bp | GCCCAGTGCTCAGTGGATACCAGTGAACAGACACATGGGGTGCTTCCAAAAGCTGTGGCCAACCGGGCATaGACACGGACAGCAGGTGTT | + |
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Preference number: 4 (lower is better) Translates to: AQCSVDTSEQTHGVLPKAVANRA*TRTAGV Trigger: AACACCTGCTGTCCGTGTCCATGCCCGGTTGGCCAC...AGCTTTTGGAAGCACCCCATGTGTCTGTTCACTGGTATCCACTGAGCACTGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| CDS-3UTR CCA 90 bp | CCTGACCTCTACCTTTATCTCCAAATCACCCTCAGCCTCTTCCTCCAGAAAAGGCCCCCAGAAACGGGGTaGCCAACCGGGCATGGACAC | + |
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Preference number: 4 (lower is better) Translates to: PDLYLYLQITLSLFLQKRPPETG*PTGHGH Trigger: GTGTCCATGCCCGGTTGGCCACCCCGTTTCTGGGGG...CCTTTTCTGGAGGAAGAGGCTGAGGGTGATTTGGAGATAAAGGTAGAGGTCAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| CDS-3UTR GCA 90 bp | TGTAACTGTTACTCCCTTGAAGACACAGGAGCACCCACGGAGCAACGGCCCAGTGGAGCAACGGCCCAGTaGTCAGTGGATACCAGTGAA | + |
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Preference number: 4 (lower is better) Translates to: CNCYSLEDTGAPTEQRPSGATAQ*SVDTSE Trigger: TTCACTGGTATCCACTGAGCACTGGGCCGTTGCTCC...ACTGGGCCGTTGCTCCGTGGGTGCTCCTGTGTCTTCAAGGGAGTAACAGTTACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| 3UTR CAA 72 bp | TTCTTCAAGGGGGAGACCTCTGTAACTGTTACTCCCTaGAAGACACAGGAGCACCCACGGAGCAACGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: FFKGETSVTVTP*KTQEHPRSNGP Trigger: TGGGCCGTTGCTCCGTGGGTGCTCCTGTGTCTTCAAGGGAGTAACAGTTACAGAGGTCTCCCCCTTGAAGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| CDS-3UTR TCA 90 bp | GCCCAGTGCTCAGTGGATACCAGTGAACAGACACATGGGGTGCTTCCAAAAGCTCTCAGTGGATACCAGTaGACAGACACATGGGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: AQCSVDTSEQTHGVLPKALSGYQ*TDTWGA Trigger: AGCACCCCATGTGTCTGTTCACTGGTATCCACTGAG...AGCTTTTGGAAGCACCCCATGTGTCTGTTCACTGGTATCCACTGAGCACTGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| CDS-3UTR TCA 90 bp | AGTGCTCAGTGGATACCAGTGAACAGACACATGGGGTGCTTCCAAAAGCTCAGAGACTTTGGGGAGAAGTaGTCTCCTGATCCCAGCACG | + |
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Preference number: 4 (lower is better) Translates to: SAQWIPVNRHMGCFQKLRDFGEK*SPDPST Trigger: CGTGCTGGGATCAGGAGATCACTTCTCCCCAAAGTC...TCTGAGCTTTTGGAAGCACCCCATGTGTCTGTTCACTGGTATCCACTGAGCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| CDS-3UTR TCA 90 bp | TCCTCCAGAAAAGGGAAACTCAAGGCCAAACTTCATTTGCATACTAAGTACAGCGGAGAAGTGATCTCCTaGTCCCAGCACGTGTGGGTA | + |
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Preference number: 4 (lower is better) Translates to: SSRKGKLKAKLHLHTKYSGEVIS*SQHVWV Trigger: TACCCACACGTGCTGGGATCAGGAGATCACTTCTCC...GCTGTACTTAGTATGCAAATGAAGTTTGGCCTTGAGTTTCCCTTTTCTGGAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| CDS-3UTR GCA 90 bp | TCCTCCAGAAAAGGGAAACTCAAGGCCAAACTTCATTTGCATACTAAGTACAGCAACAGACACATGGGGTaGTTCCAAAAGCTCAGACTT | + |
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Preference number: 4 (lower is better) Translates to: SSRKGKLKAKLHLHTKYSNRHMG*FQKLRL Trigger: AAGTCTGAGCTTTTGGAAGCACCCCATGTGTCTGTT...GCTGTACTTAGTATGCAAATGAAGTTTGGCCTTGAGTTTCCCTTTTCTGGAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| CDS-3UTR GCA 90 bp | TCCTCCAGAAAAGGGAAACTCAAGGCCAAACTTCATTTGCATACTAAGTACAGCGGACAATACTTAGTTTaGTTTCTTCAAGGGGGAGAC | + |
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Preference number: 4 (lower is better) Translates to: SSRKGKLKAKLHLHTKYSGQYLV*FLQGGD Trigger: GTCTCCCCCTTGAAGAAAGCAAACTAAGTATTGTCC...GCTGTACTTAGTATGCAAATGAAGTTTGGCCTTGAGTTTCCCTTTTCTGGAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| CDS-3UTR GCA 90 bp | TCCTCCAGAAAAGGGAAACTCAAGGCCAAACTTCATTTGCATACTAAGTACAGCAGGCCAAACTTCATTTaGATACTAAGTACAGCTAGG | + |
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Preference number: 4 (lower is better) Translates to: SSRKGKLKAKLHLHTKYSRPNFI*ILSTAR Trigger: CCTAGCTGTACTTAGTATGCAAATGAAGTTTGGCCT...GCTGTACTTAGTATGCAAATGAAGTTTGGCCTTGAGTTTCCCTTTTCTGGAGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| CDS GCA 90 bp | CTGCCCCTCTTGGGAAGCCTCAGCAGGCTGGCTAGCTGGCTGGCCTaGCTGCCCAGAAGTGAGTCGCTACTAACAAGTCCTCTTCCTGGC | + |
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Preference number: 5 (lower is better) Translates to: LPLLGSLSRLASWLA*LPRSESLLTSPLPG Trigger: GCCAGGAAGAGGACTTGTTAGTAGCGACTCACTTCTGGGCAGGCAGGCCAGCCAGCTAGCCAGCCTGCTGAGGCTTCCCAAGAGGGGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548015.1 |
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| CDS CCA 90 bp | CCCAGCACTCTGCCCCTCTTGGGAAGCCTCAGCAGGCTGGCTAGCTaGCTGGCCTGCCTGCCCAGAAGTGAGTCGCTACTAACAAGTCCT | + |
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Preference number: 5 (lower is better) Translates to: PSTLPLLGSLSRLAS*LACLPRSESLLTSP Trigger: AGGACTTGTTAGTAGCGACTCACTTCTGGGCAGGCAGGCCAGCCAGCTAGCCAGCCTGCTGAGGCTTCCCAAGAGGGGCAGAGTGCTGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548015.1 |
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| CDS-3UTR CAA 90 bp | GCCCAGTGCTCAGTGGATACCAGTGAACAGACACATGGGGTGCTTCCAAAAGCTGTAACTGTTACTCCCTaGAAGACACAGGAGCACCCA | + |
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Preference number: 5 (lower is better) Translates to: AQCSVDTSEQTHGVLPKAVTVTP*KTQEHP Trigger: TGGGTGCTCCTGTGTCTTCAAGGGAGTAACAGTTAC...AGCTTTTGGAAGCACCCCATGTGTCTGTTCACTGGTATCCACTGAGCACTGGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| CDS-3UTR CAA 90 bp | TCCTCCAGAAAAGGGAAACTCAAGGCCAAACTTCATTTGCATACTAAGTACAGCCCAAAAGCTCAGACTTaGGGGAGAAGTGATCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: SSRKGKLKAKLHLHTKYSPKAQT*GRSDLL Trigger: CAGGAGATCACTTCTCCCCAAAGTCTGAGCTTTTGG...GCTGTACTTAGTATGCAAATGAAGTTTGGCCTTGAGTTTCCCTTTTCTGGAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| CDS GCA 90 bp | ATCCAGAACCTTCTCAACTCATGCCACCTACTAAGAGAAGTTCTGTaGCCATTGCAAACCAGCAACTTGAGTCAGCAATTAGGTGGTAAT | + |
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Preference number: 5 (lower is better) Translates to: IQNLLNSCHLLREVL*PLQTSNLSQQLGGN Trigger: ATTACCACCTAATTGCTGACTCAAGTTGCTGGTTTGCAATGGGCACAGAACTTCTCTTAGTAGGTGGCATGAGTTGAGAAGGTTCTGGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549078.5 |
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| CDS-3UTR CAA 90 bp | AAGGGAAACTCAAGGCCAAACTTCATTTGCATACTAAGTACAGCTAGGGACAATGGGACAATACTTAGTTaGCTTTCTTCAAGGGGGAGA | + |
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Preference number: 5 (lower is better) Translates to: KGNSRPNFICILSTARDNGTILS*LSSRGR Trigger: TCTCCCCCTTGAAGAAAGCAAACTAAGTATTGTCCC...ATTGTCCCTAGCTGTACTTAGTATGCAAATGAAGTTTGGCCTTGAGTTTCCCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000550600.5 |
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| CDS CCA 72 bp | GCTCATGCCCCCAGAAACGGGGTGGCCAACCGGGCATaGACACGGACAGCAGGTGTTGTTGGCCCTCGAGGC | + |
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Preference number: 6 (lower is better) Translates to: AHAPRNGVANRA*TRTAGVVGPRG Trigger: GCCTCGAGGGCCAACAACACCTGCTGTCCGTGTCCATGCCCGGTTGGCCACCCCGTTTCTGGGGGCATGAGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000388837.6 |
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| CDS CCA 72 bp | GAGCGAGTGGTGAAGCTCATGCCCCCAGAAACGGGGTaGCCAACCGGGCATGGACACGGACAGCAGGTGTTG | + |
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Preference number: 6 (lower is better) Translates to: ERVVKLMPPETG*PTGHGHGQQVL Trigger: CAACACCTGCTGTCCGTGTCCATGCCCGGTTGGCCACCCCGTTTCTGGGGGCATGAGCTTCACCACTCGCTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000388837.6 ENST00000550600.5 |
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| CDS CCA 72 bp | CTGCCCCTCTTGGGAAGCCTCAGCAGGCTGGCTAGCTaGCTGGCCTGCCTGCCCAGAAGTGAGTCGCTACTA | + |
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Preference number: 6 (lower is better) Translates to: LPLLGSLSRLAS*LACLPRSESLL Trigger: TAGTAGCGACTCACTTCTGGGCAGGCAGGCCAGCCAGCTAGCCAGCCTGCTGAGGCTTCCCAAGAGGGGCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548015.1 |
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| CDS GCA 72 bp | TTGGGAAGCCTCAGCAGGCTGGCTAGCTGGCTGGCCTaGCTGCCCAGAAGTGAGTCGCTACTAACAAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: LGSLSRLASWLA*LPRSESLLTSP Trigger: AGGACTTGTTAGTAGCGACTCACTTCTGGGCAGGCAGGCCAGCCAGCTAGCCAGCCTGCTGAGGCTTCCCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000548015.1 |
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| CDS TCA 72 bp | CTCCTCCCAAAGGAAGGCCTCTTGTTTACTCCTAGATaGCTCAGCCTTAGCCACATCCGCTTAACCCTCCAA | + |
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Preference number: 6 (lower is better) Translates to: LLPKEGLLFTPR*LSLSHIRLTLQ Trigger: TTGGAGGGTTAAGCGGATGTGGCTAAGGCTGAGTCATCTAGGAGTAAACAAGAGGCCTTCCTTTGGGAGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000548015.1 |
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| CDS CAA 90 bp | CCCAGAGTCCCAGGACTGCTCATCCCTTCACTTTTGGAAACTTTTTaGGGCACCTGCTATGTGCCAAGTACTGGGATAAGGGATAGGAGT | + |
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Preference number: 6 (lower is better) Translates to: PRVPGLLIPSLLETF*GTCYVPSTGIRDRS Trigger: ACTCCTATCCCTTATCCCAGTACTTGGCACATAGCAGGTGCCCAAAAAAGTTTCCAAAAGTGAAGGGATGAGCAGTCCTGGGACTCTGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000548496.1 |
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| CDS GCA 72 bp | GGGCCCCTATCTCTGATCCAGAACCTTCTCAACTCATaGCACCTACTAAGAGAAGTTCTGTGCCCATTGCAA | + |
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Preference number: 6 (lower is better) Translates to: GPLSLIQNLLNS*HLLREVLCPLQ Trigger: TTGCAATGGGCACAGAACTTCTCTTAGTAGGTGGCATGAGTTGAGAAGGTTCTGGATCAGAGATAGGGGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549078.5 |
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| CDS CAA 90 bp | TGCCACCTACTAAGAGAAGTTCTGTGCCCATTGCAAACCAGCAACTaGAGTCAGCAATTAGGTGGTAATCCCCTGAGCACCATTCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: CHLLREVLCPLQTSN*SQQLGGNPLSTILG Trigger: GCCAAGAATGGTGCTCAGGGGATTACCACCTAATTGCTGACTCAAGTTGCTGGTTTGCAATGGGCACAGAACTTCTCTTAGTAGGTGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549078.5 |
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| CDS CAA 72 bp | CTAAGAGAAGTTCTGTGCCCATTGCAAACCAGCAACTaGAGTCAGCAATTAGGTGGTAATCCCCTGAGCACC | + |
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Preference number: 6 (lower is better) Translates to: LREVLCPLQTSN*SQQLGGNPLST Trigger: GGTGCTCAGGGGATTACCACCTAATTGCTGACTCAAGTTGCTGGTTTGCAATGGGCACAGAACTTCTCTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549078.5 |
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| CDS CAA 90 bp | AACCTTCTCAACTCATGCCACCTACTAAGAGAAGTTCTGTGCCCATaGCAAACCAGCAACTTGAGTCAGCAATTAGGTGGTAATCCCCTG | + |
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Preference number: 6 (lower is better) Translates to: NLLNSCHLLREVLCP*QTSNLSQQLGGNPL Trigger: CAGGGGATTACCACCTAATTGCTGACTCAAGTTGCTGGTTTGCAATGGGCACAGAACTTCTCTTAGTAGGTGGCATGAGTTGAGAAGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549078.5 |
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| CDS GCA 72 bp | CTTCTCAACTCATGCCACCTACTAAGAGAAGTTCTGTaGCCATTGCAAACCAGCAACTTGAGTCAGCAATTA | + |
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Preference number: 6 (lower is better) Translates to: LLNSCHLLREVL*PLQTSNLSQQL Trigger: TAATTGCTGACTCAAGTTGCTGGTTTGCAATGGGCACAGAACTTCTCTTAGTAGGTGGCATGAGTTGAGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549078.5 |
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| CDS TCA 72 bp | AGTGGAGGGAAATGCAAAGAGGAAACTGACTCTTTCTaGGCTAAAGGAACTCATGATATGAGGGATAGGATT | + |
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Preference number: 6 (lower is better) Translates to: SGGKCKEETDSF*AKGTHDMRDRI Trigger: AATCCTATCCCTCATATCATGAGTTCCTTTAGCTCAGAAAGAGTCAGTTTCCTCTTTGCATTTCCCTCCACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000548496.1 |
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