RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KRT13 (Homo sapiens)

Ensembl gene IDs: ENSG00000171401

Ensembl transcript IDs: ENST00000246635.8, ENST00000336861.7, ENST00000464634.2, ENST00000468313.5, ENST00000475217.1, ENST00000587118.1, ENST00000587544.5

Found 134 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp CAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGAGAGCAGAGGGTCTCCTGCAGGGAACTaGCGGCTCTCTCCTCCTCTG +
Preference number: 2 (lower is better)
Translates to: QRAHHQERVRTGGPESRGSPAGN*RLSPPL
Trigger: CAGAGGAGGAGAGAGCCGGCAGTTCCCTGCAGGAGA...CCCTCTGCTCTCAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
3UTR-3UTR GCA 90 bp GGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCAGTCACTGGCACTCCATCTCACTaGGGAGCTCGCTCAGCTGGG +
Preference number: 2 (lower is better)
Translates to: GWISKALPALTPTGPAVTGTPSH*GARSAG
Trigger: CCCAGCTGAGCGAGCTCCGCAGTGAGATGGAGTGCC...AGTGACTGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000464634.2
3UTR-3UTR CCA 90 bp AGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGAGAGCAGAGGGAAGAGGGACTGAGCCTTaGGTCCAGCAGCCCCTCCTC +
Preference number: 2 (lower is better)
Translates to: RGPTIRRESGQGVLRAEGRGTEP*VQQPLL
Trigger: GAGGAGGGGCTGCTGGACCCAAGGCTCAGTCCCTCT...TCCCTCTGCTCTCAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
3UTR-3UTR GCA 90 bp GTGAGGGGTCTCCTCTCTGACATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTGGGCTAGCTGGGCTCTaGTTCAGGTGCCAGTCACGG +
Preference number: 2 (lower is better)
Translates to: VRGLLSDMRGWISKALPAGLAGL*FRCQSR
Trigger: CCGTGACTGGCACCTGAAGCAGAGCCCAGCTAGCCC...AGCAGGCAGGGCCTTAGAGATCCACCCCCTCATGTCAGAGAGGAGACCCCTCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000464634.2
3UTR-3UTR CCA 90 bp GTGAGGGGTCTCCTCTCTGACATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTCCGCTCAGGGCTAGCTaGGCTCTGCTTCAGGTGCCA +
Preference number: 2 (lower is better)
Translates to: VRGLLSDMRGWISKALPAPLRAS*ALLQVP
Trigger: TGGCACCTGAAGCAGAGCCCAGCTAGCCCTGAGCGG...AGCAGGCAGGGCCTTAGAGATCCACCCCCTCATGTCAGAGAGGAGACCCCTCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000464634.2
3UTR-3UTR GCA 90 bp ACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGTCTCCTGCAGGGAACTaGCGGCTCTCTCCTCCTCTG +
Preference number: 2 (lower is better)
Translates to: TGREEHRGPTIRRESGQGSPAGN*RLSPPL
Trigger: CAGAGGAGGAGAGAGCCGGCAGTTCCCTGCAGGAGA...CCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
3UTR-3UTR TCA 90 bp CACTATCCTAAGAAAGAGGCTGGAGAGGACCTACTTGGCGTCCTGGCCCTCGAGTGTCAATCTCCAGGATaGCCCGGTTGTTTTCAATGG +
Preference number: 2 (lower is better)
Translates to: HYPKKEAGEDLLGVLALECQSPG*PGCFQW
Trigger: CCATTGAAAACAACCGGGTCATCCTGGAGATTGACA...CTCGAGGGCCAGGACGCCAAGTAGGTCCTCTCCAGCCTCTTTCTTAGGATAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000464634.2
3UTR-3UTR CCA 90 bp AGTGTTGGTAGACACCTCCTTGTTCAGCTCTGCACTCTTGGTGTGGAACCATTCGGTTGTTTTCAATGGTaGCGGTCAGGATCTTGTCCC +
Preference number: 2 (lower is better)
Translates to: SVGRHLLVQLCTLGVEPFGCFQW*RSGSCP
Trigger: GGGACAAGATCCTGACCGCCACCATTGAAAACAACC...GAATGGTTCCACACCAAGAGTGCAGAGCTGAACAAGGAGGTGTCTACCAACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000464634.2
3UTR-3UTR CAA 90 bp GGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCAGTCACTGTGGCGGTCAGGATCTaGTCCCGGAGCTCTTCAATG +
Preference number: 3 (lower is better)
Translates to: GWISKALPALTPTGPAVTVAVRI*SRSSSM
Trigger: CATTGAAGAGCTCCGGGACAAGATCCTGACCGCCAC...AGTGACTGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000464634.2
3UTR CCA 72 bp CAGACAGTGAGGGGTCTCCTCTCTGACATGAGGGGGTaGATCTCTAAGGCCCTGCCTGCTCTGACACCCACG +
Preference number: 3 (lower is better)
Translates to: QTVRGLLSDMRG*ISKALPALTPT
Trigger: CGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCCCCTCATGTCAGAGAGGAGACCCCTCACTGTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
3UTR-3UTR CAA 90 bp CACTATCCTAAGAAAGAGGCTGGAGAGGACCTACTTGGCGTCCTGGCCCTCGAGCTCAATCTCCAGGCCTaGGAGCGTGCGCCTGAGCTC +
Preference number: 3 (lower is better)
Translates to: HYPKKEAGEDLLGVLALELNLQA*ERAPEL
Trigger: GAGCTCAGGCGCACGCTCCAAGGCCTGGAGATTGAG...CTCGAGGGCCAGGACGCCAAGTAGGTCCTCTCCAGCCTCTTTCTTAGGATAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000464634.2
3UTR-3UTR CAA 90 bp GGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCAGTCACTTTCAGCTCTGCACTCTaGGTGTGGAACCATTCCTCA +
Preference number: 3 (lower is better)
Translates to: GWISKALPALTPTGPAVTFSSAL*VWNHSS
Trigger: TGAGGAATGGTTCCACACCAAGAGTGCAGAGCTGAA...AGTGACTGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000464634.2
CDS-3UTR GCA 90 bp CCAGCAGCCCCTCCTCTCTCCTGCAGGGAACTGCCGGCTCTCTCCTCCTCTGGGGGGCTAGCTGGGCTCTaGTTCAGGTGCCAGTCACGG +
Preference number: 4 (lower is better)
Translates to: PAAPPLSCRELPALSSSGGLAGL*FRCQSR
Trigger: CCGTGACTGGCACCTGAAGCAGAGCCCAGCTAGCCC...CCCAGAGGAGGAGAGAGCCGGCAGTTCCCTGCAGGAGAGAGGAGGGGCTGCTGG
67% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR GCA 90 bp AGCAGCCCCTCCTCTCTCCTGCAGGGAACTGCCGGCTCTCTCCTCCTCTGGGTGGCGGCACTCCGTCTCTaGCACCGTGTTCTCCAGCCC +
Preference number: 4 (lower is better)
Translates to: SSPSSLLQGTAGSLLLWVAALRL*HRVLQP
Trigger: GGGCTGGAGAACACGGTGGCAGAGACGGAGTGCCGC...CACCCAGAGGAGGAGAGAGCCGGCAGTTCCCTGCAGGAGAGAGGAGGGGCTGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR TCA 90 bp ATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCAAGGCCCTGCCTGCTCTaGCACCCACGGGTCCTGCAG +
Preference number: 4 (lower is better)
Translates to: MRGWISKALPALTPTGPARPCLL*HPRVLQ
Trigger: CTGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCT...TGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCCCCTCAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR TCA 90 bp CAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGAGAGCAGAGGGAGGTGCTACGGGGGCTaGCGCTTCCTGCTGAGGAAG +
Preference number: 4 (lower is better)
Translates to: QRAHHQERVRTGGPESRGRCYGG*RFLLRK
Trigger: CTTCCTCAGCAGGAAGCGTCAGCCCCCGTAGCACCT...CCCTCTGCTCTCAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000246635.8
CDS-3UTR TCA 90 bp CCAGCAGCCCCTCCTCTCTCCTGCAGGGAACTGCCGGCTCTCTCCTCCTCTGGGTCTTCTCATTGCCAGTaGGGAGGCCGCCATCACAAG +
Preference number: 4 (lower is better)
Translates to: PAAPPLSCRELPALSSSGSSHCQ*GGRHHK
Trigger: CTTGTGATGGCGGCCTCCTCACTGGCAATGAGAAGA...CCCAGAGGAGGAGAGAGCCGGCAGTTCCCTGCAGGAGAGAGGAGGGGCTGCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR GCA 90 bp CTCCTCTCTGACATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCGCGGCACTCCGTCTCTaGCACCGTGTTCTCCAGCCC +
Preference number: 4 (lower is better)
Translates to: LLSDMRGWISKALPALTPAALRL*HRVLQP
Trigger: GGGCTGGAGAACACGGTGGCAGAGACGGAGTGCCGC...GGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCCCCTCATGTCAGAGAGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR GCA 90 bp GCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGAGAGCAGAGGCACTCCATCTCACTaGGGAGCTCGCTCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: AQRAHHQERVRTGGPESRGTPSH*GARSAG
Trigger: CCCAGCTGAGCGAGCTCCGCAGTGAGATGGAGTGCC...TCTGCTCTCAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR GCA 90 bp ATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCAGGCACTCCATCTCACTaGGGAGCTCGCTCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: MRGWISKALPALTPTGPAGTPSH*GARSAG
Trigger: CCCAGCTGAGCGAGCTCCGCAGTGAGATGGAGTGCC...TGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCCCCTCAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CCA 90 bp AGCAGCCCCTCCTCTCTCCTGCAGGGAACTGCCGGCTCTCTCCTCCTCTGGGTGAACCACCTCCATAGCTaGCAGAGGAGCTCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: SSPSSLLQGTAGSLLLWVNHLHS*QRSSAG
Trigger: GCCTGCAGAGCTCCTCTGCCAGCTATGGAGGTGGTT...CACCCAGAGGAGGAGAGAGCCGGCAGTTCCCTGCAGGAGAGAGGAGGGGCTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CCA 90 bp GCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGAGAGCAGACGGAGCTCGCTCAGCTaGGCCTCGATGCTGCTGATG +
Preference number: 4 (lower is better)
Translates to: AQRAHHQERVRTGGPESRRSSLS*ASMLLM
Trigger: CATCAGCAGCATCGAGGCCCAGCTGAGCGAGCTCCG...TCTGCTCTCAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CCA 90 bp GGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCAGTCACTCGGAGCTCGCTCAGCTaGGCCTCGATGCTGCTGATG +
Preference number: 4 (lower is better)
Translates to: GWISKALPALTPTGPAVTRSSLS*ASMLLM
Trigger: CATCAGCAGCATCGAGGCCCAGCTGAGCGAGCTCCG...AGTGACTGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CCA 90 bp AGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGGGGGCTGACGCTTCTTaGCGTCCTGGCCCTCGAGCA +
Preference number: 4 (lower is better)
Translates to: REEHRGPTIRRESGQGVLGADAS*RPGPRA
Trigger: TGCTCGAGGGCCAGGACGCCAAGAAGCGTCAGCCCC...CAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000336861.7
CDS-3UTR GCA 90 bp GGGACGCCAGGCAGATTTAAGGCCTACGGACATCAGAAGTGCGGCGACCAGAGGCTGGCAGAGGAGCTCTaGAGGCGGAGGCTCATGGTG +
Preference number: 4 (lower is better)
Translates to: GTPGRFKAYGHQKCGDQRLAEEL*RRRLMV
Trigger: CACCATGAGCCTCCGCCTGCAGAGCTCCTCTGCCAG...CCTCTGGTCGCCGCACTTCTGATGTCCGTAGGCCTTAAATCTGCCTGGCGTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000336861.7
CDS-3UTR GCA 90 bp CGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTGGCACTCCATCTCACTaGGGAGCTCGCTCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: RKRRAQRAHHQERVRTGGGTPSH*GARSAG
Trigger: CCCAGCTGAGCGAGCTCCGCAGTGAGATGGAGTGCC...ACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR GCA 90 bp CTCCTCTCTGACATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCGGCACTCCATCTCACTaGGGAGCTCGCTCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: LLSDMRGWISKALPALTPGTPSH*GARSAG
Trigger: CCCAGCTGAGCGAGCTCCGCAGTGAGATGGAGTGCC...GGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCCCCTCATGTCAGAGAGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CCA 90 bp CAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGAGAGCAGAGGGAACCACCTCCATAGCTaGCAGAGGAGCTCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: QRAHHQERVRTGGPESRGNHLHS*QRSSAG
Trigger: GCCTGCAGAGCTCCTCTGCCAGCTATGGAGGTGGTT...CCCTCTGCTCTCAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CCA 90 bp CGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGCCGCTCAGGGCTAGCTaGGCTCTGCTTCAGGTGCCA +
Preference number: 4 (lower is better)
Translates to: RPEEKSTEGPPSGESQDRPLRAS*ALLQVP
Trigger: TGGCACCTGAAGCAGAGCCCAGCTAGCCCTGAGCGG...CCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CCA 90 bp CTCCTCTCTGACATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCCGGAGCTCGCTCAGCTaGGCCTCGATGCTGCTGATG +
Preference number: 4 (lower is better)
Translates to: LLSDMRGWISKALPALTPRSSLS*ASMLLM
Trigger: CATCAGCAGCATCGAGGCCCAGCTGAGCGAGCTCCG...GGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCCCCTCATGTCAGAGAGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR TCA 90 bp GAGGAGAGAGATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGATCCATAGCCCCCAGCTaGTCCCCCGGACACAAACCG +
Preference number: 4 (lower is better)
Translates to: EERDPTGREEHRGPTIRRSIAPS*SPGHKP
Trigger: CGGTTTGTGTCCGGGGGATCAGCTGGGGGCTATGGA...TCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGATCTCTCTCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR TCA 90 bp AGAGGAGAGAGATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGTCCATAGCCCCCAGCTaGTCCCCCGGACACAAACCG +
Preference number: 4 (lower is better)
Translates to: RGERSDRKRRAQRAHHQESIAPS*SPGHKP
Trigger: CGGTTTGTGTCCGGGGGATCAGCTGGGGGCTATGGA...CTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGATCTCTCTCCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR TCA 90 bp AGAGATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAAGGTGCTACGGGGGCTaGCGCTTCTTGGCGTCCTGG +
Preference number: 4 (lower is better)
Translates to: RDPTGREEHRGPTIRRESRCYGG*RFLASW
Trigger: CCAGGACGCCAAGAAGCGTCAGCCCCCGTAGCACCT...TGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGATCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000336861.7
CDS-3UTR TCA 90 bp TGCTCTGACACCCACGGGTCCTGCAGTCACTATCCTAAGAAAGAGGCTGGAGAGAGGCCCTGCCTGCTCTaGCACCCACGGGTCCTGCAG +
Preference number: 4 (lower is better)
Translates to: CSDTHGSCSHYPKKEAGERPCLL*HPRVLQ
Trigger: CTGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCT...CTCTCCAGCCTCTTTCTTAGGATAGTGACTGCAGGACCCGTGGGTGTCAGAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR TCA 90 bp CTCCTCTCTGACATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCGAGGGGTCTCCTCTCTaGCATGAGGGGGTGGATCTC +
Preference number: 4 (lower is better)
Translates to: LLSDMRGWISKALPALTPEGSPL*HEGVDL
Trigger: GAGATCCACCCCCTCATGTCAGAGAGGAGACCCCTC...GGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCCCCTCATGTCAGAGAGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR GCA 90 bp GAGAGATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCGGGCTAGCTGGGCTCTaGTTCAGGTGCCAGTCACGG +
Preference number: 4 (lower is better)
Translates to: ERSDRKRRAQRAHHQERVGLAGL*FRCQSR
Trigger: CCGTGACTGGCACCTGAAGCAGAGCCCAGCTAGCCC...GACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGATCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR GCA 90 bp TGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCAGTCACTATCGGGCTAGCTGGGCTCTaGTTCAGGTGCCAGTCACGG +
Preference number: 4 (lower is better)
Translates to: WISKALPALTPTGPAVTIGLAGL*FRCQSR
Trigger: CCGTGACTGGCACCTGAAGCAGAGCCCAGCTAGCCC...GATAGTGACTGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR GCA 90 bp AGAGGGAGGGGACGCCAGGCAGATTTAAGGCCTACGGACATCAGAAGTGCGGCGCGCGGGTCAGGTCAATaGCTGGGGTGGCATCCATCT +
Preference number: 4 (lower is better)
Translates to: RGRGRQADLRPTDIRSAARGSGQ*LGWHPS
Trigger: AGATGGATGCCACCCCAGGCATTGACCTGACCCGCG...CGCCGCACTTCTGATGTCCGTAGGCCTTAAATCTGCCTGGCGTCCCCTCCCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000336861.7
CDS-3UTR GCA 90 bp AGAGATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGCGGCACTCCGTCTCTaGCACCGTGTTCTCCAGCCC +
Preference number: 4 (lower is better)
Translates to: RDPTGREEHRGPTIRRESAALRL*HRVLQP
Trigger: GGGCTGGAGAACACGGTGGCAGAGACGGAGTGCCGC...TGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGATCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR GCA 90 bp GGGACGCCAGGCAGATTTAAGGCCTACGGACATCAGAAGTGCGGCGACCAGAGGTCTCCTGCAGGGAACTaGCGGCTCTCTCCTCCTCTG +
Preference number: 4 (lower is better)
Translates to: GTPGRFKAYGHQKCGDQRSPAGN*RLSPPL
Trigger: CAGAGGAGGAGAGAGCCGGCAGTTCCCTGCAGGAGA...CCTCTGGTCGCCGCACTTCTGATGTCCGTAGGCCTTAAATCTGCCTGGCGTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000336861.7
CDS-3UTR CCA 90 bp ATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCAAACCACCTCCATAGCTaGCAGAGGAGCTCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: MRGWISKALPALTPTGPANHLHS*QRSSAG
Trigger: GCCTGCAGAGCTCCTCTGCCAGCTATGGAGGTGGTT...TGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCCCCTCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CCA 90 bp GAGAGATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCCGGAGCTCGCTCAGCTaGGCCTCGATGCTGCTGATG +
Preference number: 4 (lower is better)
Translates to: ERSDRKRRAQRAHHQERVRSSLS*ASMLLM
Trigger: CATCAGCAGCATCGAGGCCCAGCTGAGCGAGCTCCG...GACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGATCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CCA 90 bp CAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGAGAGCAGAGGGGGAAACCAATCATCTTaGCGTCCTGGCCCTCGAGCA +
Preference number: 4 (lower is better)
Translates to: QRAHHQERVRTGGPESRGGNQSS*RPGPRA
Trigger: TGCTCGAGGGCCAGGACGCCAAGATGATTGGTTTCC...CCCTCTGCTCTCAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000246635.8
CDS-3UTR CCA 90 bp ATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGAGGGACTGAGCCTTaGGTCCAGCAGCCCCTCCTC +
Preference number: 4 (lower is better)
Translates to: IRPEEKSTEGPPSGESQDRGTEP*VQQPLL
Trigger: GAGGAGGGGCTGCTGGACCCAAGGCTCAGTCCCTCT...GTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR GCA 90 bp AGAGAGATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCTGGCAGAGGAGCTCTaGAGGCGGAGGCTCATGGTG +
Preference number: 4 (lower is better)
Translates to: REIRPEEKSTEGPPSGESLAEEL*RRRLMV
Trigger: CACCATGAGCCTCCGCCTGCAGAGCTCCTCTGCCAG...ACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGATCTCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR GCA 90 bp ATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACCGCGGGTCAGGTCAATaGCTGGGGTGGCATCCATCT +
Preference number: 4 (lower is better)
Translates to: IRPEEKSTEGPPSGESQDRGSGQ*LGWHPS
Trigger: AGATGGATGCCACCCCAGGCATTGACCTGACCCGCG...GTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR GCA 90 bp GGTCTCCTCTCTGACATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACGCGGGTCAGGTCAATaGCTGGGGTGGCATCCATCT +
Preference number: 4 (lower is better)
Translates to: GLLSDMRGWISKALPALTRGSGQ*LGWHPS
Trigger: AGATGGATGCCACCCCAGGCATTGACCTGACCCGCG...TGTCAGAGCAGGCAGGGCCTTAGAGATCCACCCCCTCATGTCAGAGAGGAGACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR GCA 90 bp AGCAGCCCCTCCTCTCTCCTGCAGGGAACTGCCGGCTCTCTCCTCCTCTGGGTGCTCCTTGTTCAGCTCTaGACTCTTGGTGTGGAACCA +
Preference number: 4 (lower is better)
Translates to: SSPSSLLQGTAGSLLLWVLLVQL*TLGVEP
Trigger: TGGTTCCACACCAAGAGTGCAGAGCTGAACAAGGAG...CACCCAGAGGAGGAGAGAGCCGGCAGTTCCCTGCAGGAGAGAGGAGGGGCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR GCA 90 bp GAGAGATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCTCTCCTGCAGGGAACTaGCGGCTCTCTCCTCCTCTG +
Preference number: 4 (lower is better)
Translates to: ERSDRKRRAQRAHHQERVSPAGN*RLSPPL
Trigger: CAGAGGAGGAGAGAGCCGGCAGTTCCCTGCAGGAGA...GACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGATCTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CCA 90 bp AGCAGCCCCTCCTCTCTCCTGCAGGGAACTGCCGGCTCTCTCCTCCTCTGGGTGGGTTGTTTTCAATGGTaGCGGTCAGGATCTTGTCCC +
Preference number: 4 (lower is better)
Translates to: SSPSSLLQGTAGSLLLWVGCFQW*RSGSCP
Trigger: GGGACAAGATCCTGACCGCCACCATTGAAAACAACC...CACCCAGAGGAGGAGAGAGCCGGCAGTTCCCTGCAGGAGAGAGGAGGGGCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CCA 90 bp AGAGATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAAGAGGGACTGAGCCTTaGGTCCAGCAGCCCCTCCTC +
Preference number: 4 (lower is better)
Translates to: RDPTGREEHRGPTIRRESRGTEP*VQQPLL
Trigger: GAGGAGGGGCTGCTGGACCCAAGGCTCAGTCCCTCT...TGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR TCA 90 bp AGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGAGAGCAGAGGGAGCTGACGCTTCCTGCTaGGGAAGGGAAACCAATCAT +
Preference number: 4 (lower is better)
Translates to: RGPTIRRESGQGVLRAEGADASC*GRETNH
Trigger: ATGATTGGTTTCCCTTCCTCAGCAGGAAGCGTCAGC...TCCCTCTGCTCTCAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000246635.8
CDS-3UTR GCA 90 bp AGATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGGTGCAGATAGAAGCTTaGTTGGCCTGGGCCGAGGAC +
Preference number: 4 (lower is better)
Translates to: RSDRKRRAQRAHHQERVRVQIEA*LAWAED
Trigger: GTCCTCGGCCCAGGCCAAGCAAGCTTCTATCTGCAC...CCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGATCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000246635.8
CDS-3UTR GCA 90 bp AATGGTCTTGTAGTAGGGGCTGTAGTCCCGCTCAGGGCTAGCTGGGCTCTGCTTCGCGGGTCAGGTCAATaGCTGGGGTGGCATCCATCT +
Preference number: 4 (lower is better)
Translates to: NGLVVGAVVPLRASWALLRGSGQ*LGWHPS
Trigger: AGATGGATGCCACCCCAGGCATTGACCTGACCCGCG...AAGCAGAGCCCAGCTAGCCCTGAGCGGGACTACAGCCCCTACTACAAGACCATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000464634.2
CDS-3UTR TCA 90 bp AGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGGGACACAAACCGAGTTaGACAGGTAGAGACACCACG +
Preference number: 4 (lower is better)
Translates to: REEHRGPTIRRESGQGVLGHKPS*TGRDTT
Trigger: CGTGGTGTCTCTACCTGTTCAACTCGGTTTGTGTCC...CAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR TCA 90 bp GGTCTCCTCTCTGACATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTCTGACATCTTCTCATTGCCAGTaGGGAGGCCGCCATCACAAG +
Preference number: 4 (lower is better)
Translates to: GLLSDMRGWISKALPALTSSHCQ*GGRHHK
Trigger: CTTGTGATGGCGGCCTCCTCACTGGCAATGAGAAGA...TGTCAGAGCAGGCAGGGCCTTAGAGATCCACCCCCTCATGTCAGAGAGGAGACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000587544.5
CDS-3UTR GCA 90 bp GCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGAGAGCAGACTCCTTGTTCAGCTCTaGACTCTTGGTGTGGAACCA +
Preference number: 4 (lower is better)
Translates to: AQRAHHQERVRTGGPESRLLVQL*TLGVEP
Trigger: TGGTTCCACACCAAGAGTGCAGAGCTGAACAAGGAG...TCTGCTCTCAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR GCA 90 bp GTGTTGGTAGACACCTCCTTGTTCAGCTCTGCACTCTTGGTGTGGAACCATTCCGCGGCACTCCGTCTCTaGCACCGTGTTCTCCAGCCC +
Preference number: 4 (lower is better)
Translates to: VLVDTSLFSSALLVWNHSAALRL*HRVLQP
Trigger: GGGCTGGAGAACACGGTGGCAGAGACGGAGTGCCGC...GGAATGGTTCCACACCAAGAGTGCAGAGCTGAACAAGGAGGTGTCTACCAACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000464634.2
CDS-3UTR CCA 90 bp AATGGTCTTGTAGTAGGGGCTGTAGTCCCGCTCAGGGCTAGCTGGGCTCTGCTTAACCACCTCCATAGCTaGCAGAGGAGCTCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: NGLVVGAVVPLRASWALLNHLHS*QRSSAG
Trigger: GCCTGCAGAGCTCCTCTGCCAGCTATGGAGGTGGTT...AAGCAGAGCCCAGCTAGCCCTGAGCGGGACTACAGCCCCTACTACAAGACCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000464634.2
CDS-3UTR CCA 90 bp AGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGAGAGCAGAGGGAGGTTGTTTTCAATGGTaGCGGTCAGGATCTTGTCCC +
Preference number: 4 (lower is better)
Translates to: RGPTIRRESGQGVLRAEGGCFQW*RSGSCP
Trigger: GGGACAAGATCCTGACCGCCACCATTGAAAACAACC...TCCCTCTGCTCTCAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CCA 90 bp ATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCAGGTTGTTTTCAATGGTaGCGGTCAGGATCTTGTCCC +
Preference number: 4 (lower is better)
Translates to: MRGWISKALPALTPTGPAGCFQW*RSGSCP
Trigger: GGGACAAGATCCTGACCGCCACCATTGAAAACAACC...TGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCCCCTCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CCA 90 bp ATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCACCCGGTTGTTTTCAATaGTGGCGGTCAGGATCTTGT +
Preference number: 4 (lower is better)
Translates to: MRGWISKALPALTPTGPAPGCFQ*WRSGSC
Trigger: ACAAGATCCTGACCGCCACCATTGAAAACAACCGGG...TGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCCCCTCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR TCA 90 bp ATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACGGACACAAACCGAGTTaGACAGGTAGAGACACCACG +
Preference number: 4 (lower is better)
Translates to: IRPEEKSTEGPPSGESQDGHKPS*TGRDTT
Trigger: CGTGGTGTCTCTACCTGTTCAACTCGGTTTGTGTCC...GTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR TCA 90 bp GGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCAGTCACTTGTCAATCTCCAGGATaGCCCGGTTGTTTTCAATGG +
Preference number: 4 (lower is better)
Translates to: GWISKALPALTPTGPAVTCQSPG*PGCFQW
Trigger: CCATTGAAAACAACCGGGTCATCCTGGAGATTGACA...AGTGACTGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR GCA 90 bp TGCTCTGACACCCACGGGTCCTGCAGTCACTATCCTAAGAAAGAGGCTGGAGAGGTGCAGATAGAAGCTTaGTTGGCCTGGGCCGAGGAC +
Preference number: 4 (lower is better)
Translates to: CSDTHGSCSHYPKKEAGEVQIEA*LAWAED
Trigger: GTCCTCGGCCCAGGCCAAGCAAGCTTCTATCTGCAC...CTCTCCAGCCTCTTTCTTAGGATAGTGACTGCAGGACCCGTGGGTGTCAGAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CCA 90 bp ACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGCCCGGTTGTTTTCAATaGTGGCGGTCAGGATCTTGT +
Preference number: 4 (lower is better)
Translates to: TGREEHRGPTIRRESGQGPGCFQ*WRSGSC
Trigger: ACAAGATCCTGACCGCCACCATTGAAAACAACCGGG...CCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CCA 90 bp CGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCCGGTTGTTTTCAATaGTGGCGGTCAGGATCTTGT +
Preference number: 4 (lower is better)
Translates to: RKRRAQRAHHQERVRTGGPGCFQ*WRSGSC
Trigger: ACAAGATCCTGACCGCCACCATTGAAAACAACCGGG...ACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CCA 90 bp AGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGTCAGCTCTGCACTCTTaGTGTGGAACCATTCCTCAG +
Preference number: 4 (lower is better)
Translates to: REEHRGPTIRRESGQGVLSALHS*CGTIPQ
Trigger: CTGAGGAATGGTTCCACACCAAGAGTGCAGAGCTGA...CAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CCA 90 bp GGACGCCAGGCAGATTTAAGGCCTACGGACATCAGAAGTGCGGCGACCAGAGGCTCAGCTCTGCACTCTTaGTGTGGAACCATTCCTCAG +
Preference number: 4 (lower is better)
Translates to: GRQADLRPTDIRSAATRGSALHS*CGTIPQ
Trigger: CTGAGGAATGGTTCCACACCAAGAGTGCAGAGCTGA...GCCTCTGGTCGCCGCACTTCTGATGTCCGTAGGCCTTAAATCTGCCTGGCGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000336861.7
CDS-3UTR CCA 90 bp GTGAGGGGTCTCCTCTCTGACATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTTCAGCTCTGCACTCTTaGTGTGGAACCATTCCTCAG +
Preference number: 4 (lower is better)
Translates to: VRGLLSDMRGWISKALPASALHS*CGTIPQ
Trigger: CTGAGGAATGGTTCCACACCAAGAGTGCAGAGCTGA...AGCAGGCAGGGCCTTAGAGATCCACCCCCTCATGTCAGAGAGGAGACCCCTCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR TCA 90 bp CGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTTGTCAATCTCCAGGATaGCCCGGTTGTTTTCAATGG +
Preference number: 4 (lower is better)
Translates to: RKRRAQRAHHQERVRTGGCQSPG*PGCFQW
Trigger: CCATTGAAAACAACCGGGTCATCCTGGAGATTGACA...ACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR TCA 90 bp ACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGTGTCAATCTCCAGGATaGCCCGGTTGTTTTCAATGG +
Preference number: 4 (lower is better)
Translates to: TGREEHRGPTIRRESGQGCQSPG*PGCFQW
Trigger: CCATTGAAAACAACCGGGTCATCCTGGAGATTGACA...CCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR TCA 90 bp GTGAGGGGTCTCCTCTCTGACATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTTGTCAATCTCCAGGATaGCCCGGTTGTTTTCAATGG +
Preference number: 4 (lower is better)
Translates to: VRGLLSDMRGWISKALPACQSPG*PGCFQW
Trigger: CCATTGAAAACAACCGGGTCATCCTGGAGATTGACA...AGCAGGCAGGGCCTTAGAGATCCACCCCCTCATGTCAGAGAGGAGACCCCTCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR GCA 90 bp TGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCAGTCACTATCCTCCTTGTTCAGCTCTaGACTCTTGGTGTGGAACCA +
Preference number: 4 (lower is better)
Translates to: WISKALPALTPTGPAVTILLVQL*TLGVEP
Trigger: TGGTTCCACACCAAGAGTGCAGAGCTGAACAAGGAG...GATAGTGACTGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CCA 90 bp AGATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACCTGGCCGACCACCTaGTTGCTAAATTCCTTCATC +
Preference number: 4 (lower is better)
Translates to: RSDRKRRAQRAHHQERVRTWPTT*LLNSFI
Trigger: GATGAAGGAATTTAGCAACCAGGTGGTCGGCCAGGT...CCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR TCA 90 bp TGCTCTGACACCCACGGGTCCTGCAGTCACTATCCTAAGAAAGAGGCTGGAGAGGGACACAAACCGAGTTaGACAGGTAGAGACACCACG +
Preference number: 4 (lower is better)
Translates to: CSDTHGSCSHYPKKEAGEGHKPS*TGRDTT
Trigger: CGTGGTGTCTCTACCTGTTCAACTCGGTTTGTGTCC...CTCTCCAGCCTCTTTCTTAGGATAGTGACTGCAGGACCCGTGGGTGTCAGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000587544.5
CDS-3UTR GCA 90 bp AATGGTCTTGTAGTAGGGGCTGTAGTCCCGCTCAGGGCTAGCTGGGCTCTGCTTCGGTCGTTGAGGTTCTaGATGGTGATCGAGTTGAAC +
Preference number: 4 (lower is better)
Translates to: NGLVVGAVVPLRASWALLRSLRF*MVIELN
Trigger: GTTCAACTCGATCACCATGCAGAACCTCAACGACCG...AAGCAGAGCCCAGCTAGCCCTGAGCGGGACTACAGCCCCTACTACAAGACCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000464634.2
CDS-3UTR CCA 90 bp AATGGTCTTGTAGTAGGGGCTGTAGTCCCGCTCAGGGCTAGCTGGGCTCTGCTTACCTGGCCGACCACCTaGTTGCTAAATTCCTTCATC +
Preference number: 4 (lower is better)
Translates to: NGLVVGAVVPLRASWALLTWPTT*LLNSFI
Trigger: GATGAAGGAATTTAGCAACCAGGTGGTCGGCCAGGT...AAGCAGAGCCCAGCTAGCCCTGAGCGGGACTACAGCCCCTACTACAAGACCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000464634.2
CDS-3UTR GCA 90 bp AGTGTTGGTAGACACCTCCTTGTTCAGCTCTGCACTCTTGGTGTGGAACCATTCGTGCAGATAGAAGCTTaGTTGGCCTGGGCCGAGGAC +
Preference number: 4 (lower is better)
Translates to: SVGRHLLVQLCTLGVEPFVQIEA*LAWAED
Trigger: GTCCTCGGCCCAGGCCAAGCAAGCTTCTATCTGCAC...GAATGGTTCCACACCAAGAGTGCAGAGCTGAACAAGGAGGTGTCTACCAACACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000464634.2
CDS-3UTR GCA 90 bp TGCTCTGACACCCACGGGTCCTGCAGTCACTATCCTAAGAAAGAGGCTGGAGAGCTCCTTGTTCAGCTCTaGACTCTTGGTGTGGAACCA +
Preference number: 4 (lower is better)
Translates to: CSDTHGSCSHYPKKEAGELLVQL*TLGVEP
Trigger: TGGTTCCACACCAAGAGTGCAGAGCTGAACAAGGAG...CTCTCCAGCCTCTTTCTTAGGATAGTGACTGCAGGACCCGTGGGTGTCAGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR GCA 90 bp TGCTCTGACACCCACGGGTCCTGCAGTCACTATCCTAAGAAAGAGGCTGGAGAGGACACCCACGGGTCCTaGAGTCACTATCCTAAGAAA +
Preference number: 4 (lower is better)
Translates to: CSDTHGSCSHYPKKEAGEDTHGS*SHYPKK
Trigger: TTTCTTAGGATAGTGACTGCAGGACCCGTGGGTGTC...CTCTCCAGCCTCTTTCTTAGGATAGTGACTGCAGGACCCGTGGGTGTCAGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CCA 90 bp TGCTCTGACACCCACGGGTCCTGCAGTCACTATCCTAAGAAAGAGGCTGGAGAGCCCGGTTGTTTTCAATaGTGGCGGTCAGGATCTTGT +
Preference number: 4 (lower is better)
Translates to: CSDTHGSCSHYPKKEAGEPGCFQ*WRSGSC
Trigger: ACAAGATCCTGACCGCCACCATTGAAAACAACCGGG...CTCTCCAGCCTCTTTCTTAGGATAGTGACTGCAGGACCCGTGGGTGTCAGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CCA 90 bp TGCTCTGACACCCACGGGTCCTGCAGTCACTATCCTAAGAAAGAGGCTGGAGAGACCTGGCCGACCACCTaGTTGCTAAATTCCTTCATC +
Preference number: 4 (lower is better)
Translates to: CSDTHGSCSHYPKKEAGETWPTT*LLNSFI
Trigger: GATGAAGGAATTTAGCAACCAGGTGGTCGGCCAGGT...CTCTCCAGCCTCTTTCTTAGGATAGTGACTGCAGGACCCGTGGGTGTCAGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CCA 90 bp CAGGCAGATTTAAGGCCTACGGACATCAGAAGTGCGGCGACCAGAGGCATTAGAACCTGGCCGACCACCTaGTTGCTAAATTCCTTCATC +
Preference number: 4 (lower is better)
Translates to: QADLRPTDIRSAATRGIRTWPTT*LLNSFI
Trigger: GATGAAGGAATTTAGCAACCAGGTGGTCGGCCAGGT...TCTAATGCCTCTGGTCGCCGCACTTCTGATGTCCGTAGGCCTTAAATCTGCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000336861.7
CDS-3UTR GCA 90 bp GTGTTGGTAGACACCTCCTTGTTCAGCTCTGCACTCTTGGTGTGGAACCATTCCGACACCCACGGGTCCTaGAGTCACTATCCTAAGAAA +
Preference number: 4 (lower is better)
Translates to: VLVDTSLFSSALLVWNHSDTHGS*SHYPKK
Trigger: TTTCTTAGGATAGTGACTGCAGGACCCGTGGGTGTC...GGAATGGTTCCACACCAAGAGTGCAGAGCTGAACAAGGAGGTGTCTACCAACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000464634.2
CDS-3UTR CAA 90 bp CAGCAGCCCCTCCTCTCTCCTGCAGGGAACTGCCGGCTCTCTCCTCCTCTGGGTCTCAATCTCCAGGCCTaGGAGCGTGCGCCTGAGCTC +
Preference number: 5 (lower is better)
Translates to: QQPLLSPAGNCRLSPPLGLNLQA*ERAPEL
Trigger: GAGCTCAGGCGCACGCTCCAAGGCCTGGAGATTGAG...ACCCAGAGGAGGAGAGAGCCGGCAGTTCCCTGCAGGAGAGAGGAGGGGCTGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CAA 90 bp GGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCAGTCACTCTGGAGAGGACCTACTaGGCGTCCTGGCCCTCGAGC +
Preference number: 5 (lower is better)
Translates to: GWISKALPALTPTGPAVTLERTY*ASWPSS
Trigger: GCTCGAGGGCCAGGACGCCAAGTAGGTCCTCTCCAG...AGTGACTGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS GCA 90 bp GGTGCTACGGGGGCTGACGCTTCCTGGGAAACAAGAGACAAGACATaGTCAGGCTGGAGAAGACCCACCTCAGGACAGGGCAGGGCCCCC +
Preference number: 5 (lower is better)
Translates to: GATGADASWETRDKT*SGWRRPTSGQGRAP
Trigger: GGGGGCCCTGCCCTGTCCTGAGGTGGGTCTTCTCCAGCCTGAGCATGTCTTGTCTCTTGTTTCCCAGGAAGCGTCAGCCCCCGTAGCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000468313.5
CDS-3UTR CAA 90 bp AGCAGCCCCTCCTCTCTCCTGCAGGGAACTGCCGGCTCTCTCCTCCTCTGGGTGGTGGCGGTCAGGATCTaGTCCCGGAGCTCTTCAATG +
Preference number: 5 (lower is better)
Translates to: SSPSSLLQGTAGSLLLWVVAVRI*SRSSSM
Trigger: CATTGAAGAGCTCCGGGACAAGATCCTGACCGCCAC...CACCCAGAGGAGGAGAGAGCCGGCAGTTCCCTGCAGGAGAGAGGAGGGGCTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CAA 90 bp GTGAGGGGTCTCCTCTCTGACATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTCTCAATCTCCAGGCCTaGGAGCGTGCGCCTGAGCTC +
Preference number: 5 (lower is better)
Translates to: VRGLLSDMRGWISKALPALNLQA*ERAPEL
Trigger: GAGCTCAGGCGCACGCTCCAAGGCCTGGAGATTGAG...AGCAGGCAGGGCCTTAGAGATCCACCCCCTCATGTCAGAGAGGAGACCCCTCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CAA 90 bp AGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGAGAGCAGAGGGAGGGAAACCAATCATCTaGGCGTCCTGGCCCTCGAGC +
Preference number: 5 (lower is better)
Translates to: RGPTIRRESGQGVLRAEGGKPII*ASWPSS
Trigger: GCTCGAGGGCCAGGACGCCAAGATGATTGGTTTCCC...TCCCTCTGCTCTCAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000246635.8
CDS-3UTR CAA 90 bp GGTCTCCTCTCTGACATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACTGGAGAGGACCTACTaGGCGTCCTGGCCCTCGAGC +
Preference number: 5 (lower is better)
Translates to: GLLSDMRGWISKALPALTLERTY*ASWPSS
Trigger: GCTCGAGGGCCAGGACGCCAAGTAGGTCCTCTCCAG...TGTCAGAGCAGGCAGGGCCTTAGAGATCCACCCCCTCATGTCAGAGAGGAGACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CAA 90 bp GGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCAGTCACTCAGATAGAAGCTTGCTaGGCCTGGGCCGAGGACTGT +
Preference number: 5 (lower is better)
Translates to: GWISKALPALTPTGPAVTQIEAC*AWAEDC
Trigger: ACAGTCCTCGGCCCAGGCCAAGCAAGCTTCTATCTG...AGTGACTGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CAA 90 bp CGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTGGTGCAGATAGAAGCTaGCTTGGCCTGGGCCGAGGA +
Preference number: 5 (lower is better)
Translates to: RKRRAQRAHHQERVRTGGGADRS*LGLGRG
Trigger: TCCTCGGCCCAGGCCAAGCAAGCTTCTATCTGCACC...ACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000246635.8
CDS TCA 90 bp CTAACTCTGCCTCCCCCTACACCACGGGGCTGTTCCCTTACCTGCTaGGGAAGGGAAACCAATCATCTTGGCGTCCTGGCCCTCGAGCAG +
Preference number: 5 (lower is better)
Translates to: LTLPPPTPRGCSLTC*GRETNHLGVLALEQ
Trigger: CTGCTCGAGGGCCAGGACGCCAAGATGATTGGTTTCCCTTCCTCAGCAGGTAAGGGAACAGCCCCGTGGTGTAGGGGGAGGCAGAGTTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000468313.5
CDS-3UTR CAA 90 bp AGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGGTGGCGGTCAGGATCTaGTCCCGGAGCTCTTCAATG +
Preference number: 5 (lower is better)
Translates to: REEHRGPTIRRESGQGVLVAVRI*SRSSSM
Trigger: CATTGAAGAGCTCCGGGACAAGATCCTGACCGCCAC...CAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CAA 90 bp GTGAGGGGTCTCCTCTCTGACATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTGTGGCGGTCAGGATCTaGTCCCGGAGCTCTTCAATG +
Preference number: 5 (lower is better)
Translates to: VRGLLSDMRGWISKALPAVAVRI*SRSSSM
Trigger: CATTGAAGAGCTCCGGGACAAGATCCTGACCGCCAC...AGCAGGCAGGGCCTTAGAGATCCACCCCCTCATGTCAGAGAGGAGACCCCTCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CAA 90 bp AGATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGCAGATAGAAGCTTGCTaGGCCTGGGCCGAGGACTGT +
Preference number: 5 (lower is better)
Translates to: RSDRKRRAQRAHHQERVRQIEAC*AWAEDC
Trigger: ACAGTCCTCGGCCCAGGCCAAGCAAGCTTCTATCTG...CCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGATCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000246635.8
CDS-3UTR CAA 90 bp AATGGTCTTGTAGTAGGGGCTGTAGTCCCGCTCAGGGCTAGCTGGGCTCTGCTTGGTGCAGATAGAAGCTaGCTTGGCCTGGGCCGAGGA +
Preference number: 5 (lower is better)
Translates to: NGLVVGAVVPLRASWALLGADRS*LGLGRG
Trigger: TCCTCGGCCCAGGCCAAGCAAGCTTCTATCTGCACC...AAGCAGAGCCCAGCTAGCCCTGAGCGGGACTACAGCCCCTACTACAAGACCATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000464634.2
CDS TCA 90 bp ATGTCTTGGCAGCCTCAGACTAGCACCCTCCCTAGGCCACTGTCTTaGGATCCATCCCCTGAAAGTCAGGAGGGACTCGGCTTGGTGCCA +
Preference number: 5 (lower is better)
Translates to: MSWQPQTSTLPRPLS*DPSPESQEGLGLVP
Trigger: TGGCACCAAGCCGAGTCCCTCCTGACTTTCAGGGGATGGATCTCAAGACAGTGGCCTAGGGAGGGTGCTAGTCTGAGGCTGCCAAGACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587118.1
CDS-3UTR CAA 90 bp AATGGTCTTGTAGTAGGGGCTGTAGTCCCGCTCAGGGCTAGCTGGGCTCTGCTTCAGATAGAAGCTTGCTaGGCCTGGGCCGAGGACTGT +
Preference number: 5 (lower is better)
Translates to: NGLVVGAVVPLRASWALLQIEAC*AWAEDC
Trigger: ACAGTCCTCGGCCCAGGCCAAGCAAGCTTCTATCTG...AAGCAGAGCCCAGCTAGCCCTGAGCGGGACTACAGCCCCTACTACAAGACCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000464634.2
CDS-3UTR CAA 90 bp GCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGAGAGCAGATTCAGCTCTGCACTCTaGGTGTGGAACCATTCCTCA +
Preference number: 5 (lower is better)
Translates to: AQRAHHQERVRTGGPESRFSSAL*VWNHSS
Trigger: TGAGGAATGGTTCCACACCAAGAGTGCAGAGCTGAA...TCTGCTCTCAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CAA 90 bp GGGTGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCAGTCACTTTGGTAGACACCTCCTaGTTCAGCTCTGCACTCTTG +
Preference number: 5 (lower is better)
Translates to: GWISKALPALTPTGPAVTLVDTS*FSSALL
Trigger: CAAGAGTGCAGAGCTGAACAAGGAGGTGTCTACCAA...AGTGACTGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CAA 90 bp CAGGCAGATTTAAGGCCTACGGACATCAGAAGTGCGGCGACCAGAGGCATTAGACTCAATCTCCAGGCCTaGGAGCGTGCGCCTGAGCTC +
Preference number: 5 (lower is better)
Translates to: QADLRPTDIRSAATRGIRLNLQA*ERAPEL
Trigger: GAGCTCAGGCGCACGCTCCAAGGCCTGGAGATTGAG...TCTAATGCCTCTGGTCGCCGCACTTCTGATGTCCGTAGGCCTTAAATCTGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000336861.7
CDS-3UTR CAA 90 bp GGGACGCCAGGCAGATTTAAGGCCTACGGACATCAGAAGTGCGGCGACCAGAGGATGGTGAGAGCAGGATaGAGAGCAGGTGCAGATAGA +
Preference number: 5 (lower is better)
Translates to: GTPGRFKAYGHQKCGDQRMVRAG*RAGADR
Trigger: TCTATCTGCACCTGCTCTCAATCCTGCTCTCACCAT...CCTCTGGTCGCCGCACTTCTGATGTCCGTAGGCCTTAAATCTGCCTGGCGTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000336861.7
CDS-3UTR CAA 90 bp AGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGGGGTCCTGTTGGTAGACACCTCCTaGTTCAGCTCTGCACTCTTG +
Preference number: 5 (lower is better)
Translates to: REEHRGPTIRRESGQGVLLVDTS*FSSALL
Trigger: CAAGAGTGCAGAGCTGAACAAGGAGGTGTCTACCAA...CAGGACCCCCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CAA 90 bp CGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTCAGGACAGGTTGGTAGACACCTCCTaGTTCAGCTCTGCACTCTTG +
Preference number: 5 (lower is better)
Translates to: RPEEKSTEGPPSGESQDRLVDTS*FSSALL
Trigger: CAAGAGTGCAGAGCTGAACAAGGAGGTGTCTACCAA...CCTGTCCTGACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CAA 90 bp TGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCAGTCACTATCATGGTGAGAGCAGGATaGAGAGCAGGTGCAGATAGA +
Preference number: 5 (lower is better)
Translates to: WISKALPALTPTGPAVTIMVRAG*RAGADR
Trigger: TCTATCTGCACCTGCTCTCAATCCTGCTCTCACCAT...GATAGTGACTGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CAA 90 bp GGTCTCCTCTCTGACATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTCTGACAATGGTGAGAGCAGGATaGAGAGCAGGTGCAGATAGA +
Preference number: 5 (lower is better)
Translates to: GLLSDMRGWISKALPALTMVRAG*RAGADR
Trigger: TCTATCTGCACCTGCTCTCAATCCTGCTCTCACCAT...TGTCAGAGCAGGCAGGGCCTTAGAGATCCACCCCCTCATGTCAGAGAGGAGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CAA 90 bp AGAGGAGAGAGATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGTTCAGCTCTGCACTCTaGGTGTGGAACCATTCCTCA +
Preference number: 5 (lower is better)
Translates to: RGERSDRKRRAQRAHHQEFSSAL*VWNHSS
Trigger: TGAGGAATGGTTCCACACCAAGAGTGCAGAGCTGAA...CTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGATCTCTCTCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CAA 90 bp GGTCTCCTCTCTGACATGAGGGGGTGGATCTCTAAGGCCCTGCCTGCTCTGACATTCAGCTCTGCACTCTaGGTGTGGAACCATTCCTCA +
Preference number: 5 (lower is better)
Translates to: GLLSDMRGWISKALPALTFSSAL*VWNHSS
Trigger: TGAGGAATGGTTCCACACCAAGAGTGCAGAGCTGAA...TGTCAGAGCAGGCAGGGCCTTAGAGATCCACCCCCTCATGTCAGAGAGGAGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CAA 90 bp TGGATCTCTAAGGCCCTGCCTGCTCTGACACCCACGGGTCCTGCAGTCACTATCTTGGTAGACACCTCCTaGTTCAGCTCTGCACTCTTG +
Preference number: 5 (lower is better)
Translates to: WISKALPALTPTGPAVTILVDTS*FSSALL
Trigger: CAAGAGTGCAGAGCTGAACAAGGAGGTGTCTACCAA...GATAGTGACTGCAGGACCCGTGGGTGTCAGAGCAGGCAGGGCCTTAGAGATCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000464634.2
ENST00000587544.5
CDS-3UTR CAA 90 bp AGTGTTGGTAGACACCTCCTTGTTCAGCTCTGCACTCTTGGTGTGGAACCATTCCTCAATCTCCAGGCCTaGGAGCGTGCGCCTGAGCTC +
Preference number: 5 (lower is better)
Translates to: SVGRHLLVQLCTLGVEPFLNLQA*ERAPEL
Trigger: GAGCTCAGGCGCACGCTCCAAGGCCTGGAGATTGAG...GAATGGTTCCACACCAAGAGTGCAGAGCTGAACAAGGAGGTGTCTACCAACACT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000464634.2
CDS-3UTR CAA 90 bp AGAGAGATCCGACCGGAAGAGAAGAGCACAGAGGGCCCACCATCAGGAGAGAGTATGGTGAGAGCAGGATaGAGAGCAGGTGCAGATAGA +
Preference number: 5 (lower is better)
Translates to: REIRPEEKSTEGPPSGESMVRAG*RAGADR
Trigger: TCTATCTGCACCTGCTCTCAATCCTGCTCTCACCAT...ACTCTCTCCTGATGGTGGGCCCTCTGTGCTCTTCTCTTCCGGTCGGATCTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000246635.8
ENST00000336861.7
CDS-3UTR CAA 90 bp AATGGTCTTGTAGTAGGGGCTGTAGTCCCGCTCAGGGCTAGCTGGGCTCTGCTTTTCAGCTCTGCACTCTaGGTGTGGAACCATTCCTCA +
Preference number: 5 (lower is better)
Translates to: NGLVVGAVVPLRASWALLFSSAL*VWNHSS
Trigger: TGAGGAATGGTTCCACACCAAGAGTGCAGAGCTGAA...AAGCAGAGCCCAGCTAGCCCTGAGCGGGACTACAGCCCCTACTACAAGACCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000464634.2
CDS CCA 90 bp CCCTGGAGGGCTCACAAACTCCTCATTAGTCAGGTGGTGCGTGGATaGAGACTCTTTATTGTCCCCAAAGATGGCTCTTCCCAAGACAGC +
Preference number: 5 (lower is better)
Translates to: PWRAHKLLISQVVRG*RLFIVPKDGSSQDS
Trigger: GCTGTCTTGGGAAGAGCCATCTTTGGGGACAATAAAGAGTCTCCATCCACGCACCACCTGACTAATGAGGAGTTTGTGAGCCCTCCAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000468313.5
CDS GCA 90 bp TGTCTTGAGATCCATCCCCTGAAAGTCAGGAGGGACTCGGCTTGGTaGCACATATCTCACAATCACTTTGCTAGAGCTGACTTCCCAGCT +
Preference number: 5 (lower is better)
Translates to: CLEIHPLKVRRDSAW*HISHNHFARADFPA
Trigger: AGCTGGGAAGTCAGCTCTAGCAAAGTGATTGTGAGATATGTGGCACCAAGCCGAGTCCCTCCTGACTTTCAGGGGATGGATCTCAAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587118.1
CDS CCA 90 bp CACTGTCTTGAGATCCATCCCCTGAAAGTCAGGAGGGACTCGGCTTaGTGCCACATATCTCACAATCACTTTGCTAGAGCTGACTTCCCA +
Preference number: 5 (lower is better)
Translates to: HCLEIHPLKVRRDSA*CHISHNHFARADFP
Trigger: TGGGAAGTCAGCTCTAGCAAAGTGATTGTGAGATATGTGGCACCAAGCCGAGTCCCTCCTGACTTTCAGGGGATGGATCTCAAGACAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587118.1
CDS TCA 90 bp GCTGCATCCCCTCCAATCGTTTCTAACACTTTAATATTCCATGTCTaGGCACCCTGGGGGAGATGCAGGGAGTGCATTTCTGAGGAACGA +
Preference number: 5 (lower is better)
Translates to: AASPPIVSNTLIFHV*APWGRCRECISEER
Trigger: TCGTTCCTCAGAAATGCACTCCCTGCATCTCCCCCAGGGTGCTCAGACATGGAATATTAAAGTGTTAGAAACGATTGGAGGGGATGCAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000587118.1
CDS CCA 90 bp CACATATCTCACAATCACTTTGCTAGAGCTGACTTCCCAGCTGAGTaGAGGGGAAATCCAACAAATATTCCCATCCCTTTGAATTTCTTG +
Preference number: 5 (lower is better)
Translates to: HISHNHFARADFPAE*RGNPTNIPIPLNFL
Trigger: CAAGAAATTCAAAGGGATGGGAATATTTGTTGGATTTCCCCTCCACTCAGCTGGGAAGTCAGCTCTAGCAAAGTGATTGTGAGATATGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587118.1
CDS TCA 72 bp CCTCCCCCTACACCACGGGGCTGTTCCCTTACCTGCTaGGGAAGGGAAACCAATCATCTTGGCGTCCTGGCC +
Preference number: 6 (lower is better)
Translates to: PPPTPRGCSLTC*GRETNHLGVLA
Trigger: GGCCAGGACGCCAAGATGATTGGTTTCCCTTCCTCAGCAGGTAAGGGAACAGCCCCGTGGTGTAGGGGGAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000468313.5
CDS TCA 72 bp CAGCCTCAGACTAGCACCCTCCCTAGGCCACTGTCTTaGGATCCATCCCCTGAAAGTCAGGAGGGACTCGGC +
Preference number: 6 (lower is better)
Translates to: QPQTSTLPRPLS*DPSPESQEGLG
Trigger: GCCGAGTCCCTCCTGACTTTCAGGGGATGGATCTCAAGACAGTGGCCTAGGGAGGGTGCTAGTCTGAGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587118.1
CDS CCA 72 bp GGAAGTGCCTCGGCTTATCATTTCAAGCCCCTGGGCTaGACTCTAGTGCCTCCTAGCTGTGCCCCCAGCTCA +
Preference number: 6 (lower is better)
Translates to: GSASAYHFKPLG*TLVPPSCAPSS
Trigger: TGAGCTGGGGGCACAGCTAGGAGGCACTAGAGTCCAGCCCAGGGGCTTGAAATGATAAGCCGAGGCACTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000475217.1
CDS CCA 72 bp CCCCCTGGAGGGCTCACAAACTCCTCATTAGTCAGGTaGTGCGTGGATGGAGACTCTTTATTGTCCCCAAAG +
Preference number: 6 (lower is better)
Translates to: PPGGLTNSSLVR*CVDGDSLLSPK
Trigger: CTTTGGGGACAATAAAGAGTCTCCATCCACGCACCACCTGACTAATGAGGAGTTTGTGAGCCCTCCAGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000468313.5
CDS CAA 72 bp GGGACTCGGCTTGGTGCCACATATCTCACAATCACTTaGCTAGAGCTGACTTCCCAGCTGAGTGGAGGGGAA +
Preference number: 6 (lower is better)
Translates to: GTRLGATYLTIT*LELTSQLSGGE
Trigger: TTCCCCTCCACTCAGCTGGGAAGTCAGCTCTAGCAAAGTGATTGTGAGATATGTGGCACCAAGCCGAGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587118.1
CDS GCA 72 bp CCTGGAGGGCTCACAAACTCCTCATTAGTCAGGTGGTaGGTGGATGGAGACTCTTTATTGTCCCCAAAGATG +
Preference number: 6 (lower is better)
Translates to: PGGLTNSSLVRW*VDGDSLLSPKM
Trigger: CATCTTTGGGGACAATAAAGAGTCTCCATCCACGCACCACCTGACTAATGAGGAGTTTGTGAGCCCTCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000468313.5
CDS GCA 72 bp ATCCATCCCCTGAAAGTCAGGAGGGACTCGGCTTGGTaGCACATATCTCACAATCACTTTGCTAGAGCTGAC +
Preference number: 6 (lower is better)
Translates to: IHPLKVRRDSAW*HISHNHFARAD
Trigger: GTCAGCTCTAGCAAAGTGATTGTGAGATATGTGGCACCAAGCCGAGTCCCTCCTGACTTTCAGGGGATGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587118.1
CDS CCA 72 bp GAGATCCATCCCCTGAAAGTCAGGAGGGACTCGGCTTaGTGCCACATATCTCACAATCACTTTGCTAGAGCT +
Preference number: 6 (lower is better)
Translates to: EIHPLKVRRDSA*CHISHNHFARA
Trigger: AGCTCTAGCAAAGTGATTGTGAGATATGTGGCACCAAGCCGAGTCCCTCCTGACTTTCAGGGGATGGATCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587118.1
CDS CCA 72 bp GCTCACAAACTCCTCATTAGTCAGGTGGTGCGTGGATaGAGACTCTTTATTGTCCCCAAAGATGGCTCTTCC +
Preference number: 6 (lower is better)
Translates to: AHKLLISQVVRG*RLFIVPKDGSS
Trigger: GGAAGAGCCATCTTTGGGGACAATAAAGAGTCTCCATCCACGCACCACCTGACTAATGAGGAGTTTGTGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000468313.5
CDS CCA 72 bp CACAATCACTTTGCTAGAGCTGACTTCCCAGCTGAGTaGAGGGGAAATCCAACAAATATTCCCATCCCTTTG +
Preference number: 6 (lower is better)
Translates to: HNHFARADFPAE*RGNPTNIPIPL
Trigger: CAAAGGGATGGGAATATTTGTTGGATTTCCCCTCCACTCAGCTGGGAAGTCAGCTCTAGCAAAGTGATTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587118.1
CDS CAA 90 bp GAGTGGAGGGGAAATCCAACAAATATTCCCATCCCTTTGAATTTCTaGTCTAAACGTTTATATTCCAAAGCAGTGAAAGCCTGCTCCACA +
Preference number: 6 (lower is better)
Translates to: EWRGNPTNIPIPLNF*SKRLYSKAVKACST
Trigger: TGTGGAGCAGGCTTTCACTGCTTTGGAATATAAACGTTTAGACAAGAAATTCAAAGGGATGGGAATATTTGTTGGATTTCCCCTCCACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587118.1
CDS TCA 72 bp AGTGGAGGGGAAATCCAACAAATATTCCCATCCCTTTaGATTTCTTGTCTAAACGTTTATATTCCAAAGCAG +
Preference number: 6 (lower is better)
Translates to: SGGEIQQIFPSL*ISCLNVYIPKQ
Trigger: CTGCTTTGGAATATAAACGTTTAGACAAGAAATTCAAAGGGATGGGAATATTTGTTGGATTTCCCCTCCACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587118.1
CDS CAA 72 bp GAGTGGAGGGGAAATCCAACAAATATTCCCATCCCTTaGAATTTCTTGTCTAAACGTTTATATTCCAAAGCA +
Preference number: 6 (lower is better)
Translates to: EWRGNPTNIPIP*NFLSKRLYSKA
Trigger: TGCTTTGGAATATAAACGTTTAGACAAGAAATTCAAAGGGATGGGAATATTTGTTGGATTTCCCCTCCACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587118.1
CDS CAA 72 bp GGAAATCCAACAAATATTCCCATCCCTTTGAATTTCTaGTCTAAACGTTTATATTCCAAAGCAGTGAAAGCC +
Preference number: 6 (lower is better)
Translates to: GNPTNIPIPLNF*SKRLYSKAVKA
Trigger: GGCTTTCACTGCTTTGGAATATAAACGTTTAGACAAGAAATTCAAAGGGATGGGAATATTTGTTGGATTTCC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000587118.1