Pregenerated sensors for KDM4E (Homo sapiens)
Ensembl gene IDs: ENSG00000235268Ensembl transcript IDs: ENST00000450979.2
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCGTTGTAACAGTGCCCTaGGGACACAGGCTGTGTGGG | + |
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Preference number: 4 (lower is better) Translates to: TRQVSLVNLISSSPHQCPVVTVP*GHRLCG Trigger: CCCACACAGCCTGTGTCCTCAGGGCACTGTTACAAC...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR CCA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCGGCTGTGTGGGACACTaGGCTGTGAGGTTTGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: TRQVSLVNLISSSPHQCPGCVGH*AVRFGR Trigger: TCTCCCAAACCTCACAGCCCAGTGTCCCACACAGCC...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR TCA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCCTCTTGGATGCAGGCTaGACAGTTGGCTCCTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: TRQVSLVNLISSSPHQCPLLDAG*TVGSSV Trigger: GACTGAGGAGCCAACTGTTCAGCCTGCATCCAAGAG...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR GCA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCTCTCGGGTTGCACAATaGGCACAAAGGGGTCCATGG | + |
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Preference number: 4 (lower is better) Translates to: TRQVSLVNLISSSPHQCPSRVAQ*AQRGPW Trigger: CCATGGACCCCTTTGTGCGCATTGTGCAACCCGAGA...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR TCA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCCATCCCCAGGGTAAGTaGCTGGGTCTGGGTATGATA | + |
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Preference number: 4 (lower is better) Translates to: TRQVSLVNLISSSPHQCPHPQGK*LGLGMI Trigger: TATCATACCCAGACCCAGTCACTTACCCTGGGGATG...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR GCA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCTGGGTGTCCTCTAGATaGCTGAGAGTTCTGGGGAGT | + |
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Preference number: 4 (lower is better) Translates to: TRQVSLVNLISSSPHQCPWVSSR*LRVLGS Trigger: ACTCCCCAGAACTCTCAGGCATCTAGAGGACACCCA...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR CCA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCTTGTCATCAAATCATTaGCAAGCGGGAGCTGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: TRQVSLVNLISSSPHQCPLSSNH*QAGAEA Trigger: GGCCTCAGCTCCCGCTTGCCAATGATTTGATGACAA...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR TCA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCTGTCCTCTAGATGCCTaGGAGTTCTGGGGAGTAATT | + |
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Preference number: 4 (lower is better) Translates to: TRQVSLVNLISSSPHQCPCPLDA*EFWGVI Trigger: AATTACTCCCCAGAACTCTCAGGCATCTAGAGGACA...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR TCA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCGACTGGGTCTGGGTATaGTATGCAGAGCTTTGGAAT | + |
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Preference number: 4 (lower is better) Translates to: TRQVSLVNLISSSPHQCPDWVWV*YAELWN Trigger: ATTCCAAAGCTCTGCATATCATACCCAGACCCAGTC...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR GCA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCGGTCTGGGTATGATATaGAGAGCTTTGGAATGCGGA | + |
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Preference number: 4 (lower is better) Translates to: TRQVSLVNLISSSPHQCPGLGMI*RALECG Trigger: TCCGCATTCCAAAGCTCTGCATATCATACCCAGACC...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR GCA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCGTAAAAGTGGTCCATTaGTACAGCCTTGCCCATGTT | + |
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Preference number: 4 (lower is better) Translates to: TRQVSLVNLISSSPHQCPVKVVH*YSLAHV Trigger: AACATGGGCAAGGCTGTAGCAATGGACCACTTTTAC...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR CAA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCACCTCGACCTTGACCTaGACCACGACCACGACCACG | + |
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Preference number: 5 (lower is better) Translates to: TRQVSLVNLISSSPHQCPTSTLT*TTTTTT Trigger: CGTGGTCGTGGTCGTGGTCAAGGTCAAGGTCGAGGT...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR CAA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCCTGAGGCCTGTGGCCTaGAGCTCTACTCCTTGTACC | + |
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Preference number: 5 (lower is better) Translates to: TRQVSLVNLISSSPHQCPLRPVA*SSTPCT Trigger: GGTACAAGGAGTAGAGCTCAAGGCCACAGGCCTCAG...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR CAA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCCTCATAACTCTCGGGTaGCACAATGCGCACAAAGGG | + |
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Preference number: 5 (lower is better) Translates to: TRQVSLVNLISSSPHQCPLITLG*HNAHKG Trigger: CCCTTTGTGCGCATTGTGCAACCCGAGAGTTATGAG...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR CAA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCTCCATTGCTACAGCCTaGCCCATGTTCACCAGGCAA | + |
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Preference number: 5 (lower is better) Translates to: TRQVSLVNLISSSPHQCPSIATA*PMFTRQ Trigger: TTGCCTGGTGAACATGGGCAAGGCTGTAGCAATGGA...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR CAA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCATGATATGCAGAGCTTaGGAATGCGGATCCAGGCAC | + |
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Preference number: 5 (lower is better) Translates to: TRQVSLVNLISSSPHQCPMICRA*ECGSRH Trigger: GTGCCTGGATCCGCATTCCAAAGCTCTGCATATCAT...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR CAA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCCTTGAGCTCTACTCCTaGTACCCATTAAAAGGCGCC | + |
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Preference number: 5 (lower is better) Translates to: TRQVSLVNLISSSPHQCPLELYS*YPLKGA Trigger: GGCGCCTTTTAATGGGTACAAGGAGTAGAGCTCAAG...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR CAA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCCGTAAAAGTGGTCCATaGCTACAGCCTTGCCCATGT | + |
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Preference number: 5 (lower is better) Translates to: TRQVSLVNLISSSPHQCPRKSGP*LQPCPC Trigger: ACATGGGCAAGGCTGTAGCAATGGACCACTTTTACG...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS-3UTR CAA 90 bp | ACCAGGCAAGTGTCCCTGGTGAACTTAATCAGTTCCAGTCCCCACCAGTGTCCCCTCAAAGGGACAGATTaGTCATCAAATCATTGGCAA | + |
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Preference number: 5 (lower is better) Translates to: TRQVSLVNLISSSPHQCPLKGTD*SSNHWQ Trigger: TTGCCAATGATTTGATGACAAATCTGTCCCTTTGAG...GGGACACTGGTGGGGACTGGAACTGATTAAGTTCACCAGGGACACTTGCCTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS GCA 72 bp | GTTCTCGAGTACAACAACCATGACCACGACCACGACTaGAACCTCGACCTTGACCTTGACCACGACCACGAC | + |
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Preference number: 6 (lower is better) Translates to: VLEYNNHDHDHD*NLDLDLDHDHD Trigger: GTCGTGGTCGTGGTCAAGGTCAAGGTCGAGGTTGCAGTCGTGGTCGTGGTCATGGTTGTTGTACTCGAGAAC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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| CDS CCA 72 bp | CCACCACTCAAAGGGACAGATTTGTCATCAAATCATTaGCAAGCGGGAGCTGAGGCCTGTGGCCTTGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: PPLKGTDLSSNH*QAGAEACGLEL Trigger: GAGCTCAAGGCCACAGGCCTCAGCTCCCGCTTGCCAATGATTTGATGACAAATCTGTCCCTTTGAGTGGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450979.2 |
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