Pregenerated sensors for KDM2B-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000256742Ensembl transcript IDs: ENST00000541574.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGCTGGTCGCCTAGTAAAGGAGTCCACAGAGGCGGGCAGAATGAATaGATGAAAGGCAACGTCTTCCGGTCAGCTGCGGACTGCAAAGGC | + |
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Preference number: 5 (lower is better) Translates to: GWSPSKGVHRGGQNE*MKGNVFRSAADCKG Trigger: GCCTTTGCAGTCCGCAGCTGACCGGAAGACGTTGCCTTTCATTCATTCATTCTGCCCGCCTCTGTGGACTCCTTTACTAGGCGACCAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000541574.1 |
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| CDS TCA 90 bp | GGTCGCCTAGTAAAGGAGTCCACAGAGGCGGGCAGAATGAATGAATaGAAGGCAACGTCTTCCGGTCAGCTGCGGACTGCAAAGGCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: GRLVKESTEAGRMNE*KATSSGQLRTAKAL Trigger: CAGAGCCTTTGCAGTCCGCAGCTGACCGGAAGACGTTGCCTTTCATTCATTCATTCTGCCCGCCTCTGTGGACTCCTTTACTAGGCGACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000541574.1 |
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| CDS CCA 90 bp | AAGGCAACGTCTTCCGGTCAGCTGCGGACTGCAAAGGCTCTGGTCTaGCTGTATTTCCTGTACGTGTGTGTGTCCACATCTTTGAGTGCC | + |
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Preference number: 5 (lower is better) Translates to: KATSSGQLRTAKALV*LYFLYVCVSTSLSA Trigger: GGCACTCAAAGATGTGGACACACACACGTACAGGAAATACAGCCAGACCAGAGCCTTTGCAGTCCGCAGCTGACCGGAAGACGTTGCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000541574.1 |
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| CDS GCA 72 bp | GGGGATCGTCACACTCTCCTTCGCTCCTGTGCGGGCTaGGTTAGGAGGCGCCAGATCCAATTCTCTGCGTCT | + |
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Preference number: 6 (lower is better) Translates to: GDRHTLLRSCAG*VRRRQIQFSAS Trigger: AGACGCAGAGAATTGGATCTGGCGCCTCCTAACGCAGCCCGCACAGGAGCGAAGGAGAGTGTGACGATCCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541574.1 |
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| CDS CAA 72 bp | TGGCTGTATTTCCTGTACGTGTGTGTGTCCACATCTTaGAGTGCCGGGAGTTTAAAAGTTAGGCAGTCCTTA | + |
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Preference number: 6 (lower is better) Translates to: WLYFLYVCVSTS*SAGSLKVRQSL Trigger: TAAGGACTGCCTAACTTTTAAACTCCCGGCACTCAAAGATGTGGACACACACACGTACAGGAAATACAGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541574.1 |
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