Pregenerated sensors for KCTD9 (Homo sapiens)
Ensembl gene IDs: ENSG00000104756Ensembl transcript IDs: ENST00000221200.9, ENST00000517914.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TTATACTGTATTTCCTTTGCTACCCAGAACCACAGGGCTGGTTGTCAACACATAATACTGTATTTCCTTTaGTACCCAGAACCACAGGGC | + |
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Preference number: 4 (lower is better) Translates to: LYCISFATQNHRAGCQHIILYFL*YPEPQG Trigger: GCCCTGTGGTTCTGGGTAGCAAAGGAAATACAGTAT...TATGTGTTGACAACCAGCCCTGTGGTTCTGGGTAGCAAAGGAAATACAGTATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000221200.9 |
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| CDS-3UTR CCA 90 bp | TTATACTGTATTTCCTTTGCTACCCAGAACCACAGGGCTGGTTGTCAACACATACCAGAACCACAGGGCTaGTTGTCAACACATATTGAA | + |
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Preference number: 4 (lower is better) Translates to: LYCISFATQNHRAGCQHIPEPQG*LSTHIE Trigger: TTCAATATGTGTTGACAACCAGCCCTGTGGTTCTGG...TATGTGTTGACAACCAGCCCTGTGGTTCTGGGTAGCAAAGGAAATACAGTATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000221200.9 |
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| CDS TCA 90 bp | AAGGAAGAGAATTCGTTTTGGCTTGCTCCAGCGCTGGAAGAACACTaGGCACCACACTCTCCGCAAAGGCCTAACACAGCAAAGGCGACT | + |
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Preference number: 5 (lower is better) Translates to: KEENSFWLAPALEEH*APHSPQRPNTAKAT Trigger: AGTCGCCTTTGCTGTGTTAGGCCTTTGCGGAGAGTGTGGTGCTCAGTGTTCTTCCAGCGCTGGAGCAAGCCAAAACGAATTCTCTTCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517914.1 |
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| CDS CCA 90 bp | AAAAGGCTGGGAAGGAAGAGAATTCGTTTTGGCTTGCTCCAGCGCTaGAAGAACACTGAGCACCACACTCTCCGCAAAGGCCTAACACAG | + |
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Preference number: 5 (lower is better) Translates to: KRLGRKRIRFGLLQR*KNTEHHTLRKGLTQ Trigger: CTGTGTTAGGCCTTTGCGGAGAGTGTGGTGCTCAGTGTTCTTCCAGCGCTGGAGCAAGCCAAAACGAATTCTCTTCCTTCCCAGCCTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000517914.1 |
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| CDS-3UTR CAA 90 bp | TTATACTGTATTTCCTTTGCTACCCAGAACCACAGGGCTGGTTGTCAACACATAGAACCACAGGGCTGGTaGTCAACACATATTGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: LYCISFATQNHRAGCQHIEPQGW*STHIEE Trigger: TTCTTCAATATGTGTTGACAACCAGCCCTGTGGTTC...TATGTGTTGACAACCAGCCCTGTGGTTCTGGGTAGCAAAGGAAATACAGTATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000221200.9 |
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| CDS CCA 72 bp | GGAAGGAAGAGAATTCGTTTTGGCTTGCTCCAGCGCTaGAAGAACACTGAGCACCACACTCTCCGCAAAGGC | + |
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Preference number: 6 (lower is better) Translates to: GRKRIRFGLLQR*KNTEHHTLRKG Trigger: GCCTTTGCGGAGAGTGTGGTGCTCAGTGTTCTTCCAGCGCTGGAGCAAGCCAAAACGAATTCTCTTCCTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517914.1 |
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| CDS TCA 72 bp | AATTCGTTTTGGCTTGCTCCAGCGCTGGAAGAACACTaGGCACCACACTCTCCGCAAAGGCCTAACACAGCA | + |
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Preference number: 6 (lower is better) Translates to: NSFWLAPALEEH*APHSPQRPNTA Trigger: TGCTGTGTTAGGCCTTTGCGGAGAGTGTGGTGCTCAGTGTTCTTCCAGCGCTGGAGCAAGCCAAAACGAATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000517914.1 |
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| CDS GCA 72 bp | GCAAAAGGCTGGGAAGGAAGAGAATTCGTTTTGGCTTaGTCCAGCGCTGGAAGAACACTGAGCACCACACTC | + |
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Preference number: 6 (lower is better) Translates to: AKGWEGREFVLA*SSAGRTLSTTL Trigger: GAGTGTGGTGCTCAGTGTTCTTCCAGCGCTGGAGCAAGCCAAAACGAATTCTCTTCCTTCCCAGCCTTTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000517914.1 |
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| CDS GCA 72 bp | AGCAAAGGCGACTGTCAAATCGATCCCTTTTGGGTCTaGTGTACCCGTCCTCTAGGGAATCAAAATAAGGCA | + |
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Preference number: 6 (lower is better) Translates to: SKGDCQIDPFWV*CTRPLGNQNKA Trigger: TGCCTTATTTTGATTCCCTAGAGGACGGGTACAGCAGACCCAAAAGGGATCGATTTGACAGTCGCCTTTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000517914.1 |
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| CDS CAA 72 bp | CTAACACAGCAAAGGCGACTGTCAAATCGATCCCTTTaGGGTCTGCTGTACCCGTCCTCTAGGGAATCAAAA | + |
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Preference number: 6 (lower is better) Translates to: LTQQRRLSNRSL*GLLYPSSRESK Trigger: TTTTGATTCCCTAGAGGACGGGTACAGCAGACCCAAAAGGGATCGATTTGACAGTCGCCTTTGCTGTGTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517914.1 |
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| CDS CAA 72 bp | TTTAAAAATCCTGTCTGCGACCTCGGATGGGAGATTTaGTTTATCCACGGGCAGTTTACTTCTGTCTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: FKNPVCDLGWEI*FIHGQFTSVSL Trigger: CAGGGAGACAGAAGTAAACTGCCCGTGGATAAACAAAATCTCCCATCCGAGGTCGCAGACAGGATTTTTAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000517914.1 |
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