Pregenerated sensors for KCTD4 (Homo sapiens)
Ensembl gene IDs: ENSG00000180332Ensembl transcript IDs: ENST00000379108.1, ENST00000379108.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TACTCTATTGAGACTAAGTTACCCATGCTTTGTGGGAACTCAGCCTaGAAAGAATTGAATTTGCTGGTTTTTGTCACTTCCAGGACCAGC | + |
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Preference number: 1 (lower is better) Translates to: YSIETKLPMLCGNSA*KELNLLVFVTSRTS Trigger: GCTGGTCCTGGAAGTGACAAAAACCAGCAAATTCAATTCTTTGCAGGCTGAGTTCCCACAAAGCATGGGTAACTTAGTCTCAATAGAGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000379108.1 |
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| 3UTR TCA 90 bp | GACATCTTTAGCGATAGAATTTACATACCGTTAGCTCACAGTAATTaGTTAGTAGCAGGGCTCTGTAGTACAGAGCTAGCTGGGCATGTT | + |
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Preference number: 1 (lower is better) Translates to: DIFSDRIYIPLAHSN*LVAGLCSTELAGHV Trigger: AACATGCCCAGCTAGCTCTGTACTACAGAGCCCTGCTACTAATCAATTACTGTGAGCTAACGGTATGTAAATTCTATCGCTAAAGATGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000379108.1 |
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| 3UTR CAA 90 bp | AAGTTACCCATGCTTTGTGGGAACTCAGCCTGCAAAGAATTGAATTaGCTGGTTTTTGTCACTTCCAGGACCAGCCAGGGTTCCTGTAGC | + |
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Preference number: 2 (lower is better) Translates to: KLPMLCGNSACKELN*LVFVTSRTSQGSCS Trigger: GCTACAGGAACCCTGGCTGGTCCTGGAAGTGACAAAAACCAGCAAATTCAATTCTTTGCAGGCTGAGTTCCCACAAAGCATGGGTAACTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000379108.1 |
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| 3UTR CAA 90 bp | GAGACTAAGTTACCCATGCTTTGTGGGAACTCAGCCTGCAAAGAATaGAATTTGCTGGTTTTTGTCACTTCCAGGACCAGCCAGGGTTCC | + |
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Preference number: 2 (lower is better) Translates to: ETKLPMLCGNSACKE*NLLVFVTSRTSQGS Trigger: GGAACCCTGGCTGGTCCTGGAAGTGACAAAAACCAGCAAATTCAATTCTTTGCAGGCTGAGTTCCCACAAAGCATGGGTAACTTAGTCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000379108.1 |
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| 3UTR-3UTR GCA 90 bp | ACACCCCAGAGGAAGGACATCTTTAGCGATAGAATTTACATACCGTTAGCTCACCCGAAGCTTGCTGGCTaGATGCTTGTTGCCTTTGTT | + |
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Preference number: 2 (lower is better) Translates to: TPQRKDIFSDRIYIPLAHPKLAG*MLVAFV Trigger: AACAAAGGCAACAAGCATGCAGCCAGCAAGCTTCGG...GTGAGCTAACGGTATGTAAATTCTATCGCTAAAGATGTCCTTCCTCTGGGGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379108.1 |
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| 3UTR-3UTR GCA 90 bp | ACACCCCAGAGGAAGGACATCTTTAGCGATAGAATTTACATACCGTTAGCTCACTGGTTTTCCGAAGCTTaGTGGCTGCATGCTTGTTGC | + |
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Preference number: 2 (lower is better) Translates to: TPQRKDIFSDRIYIPLAHWFSEA*WLHACC Trigger: GCAACAAGCATGCAGCCAGCAAGCTTCGGAAAACCA...GTGAGCTAACGGTATGTAAATTCTATCGCTAAAGATGTCCTTCCTCTGGGGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379108.1 |
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| 3UTR CCA 72 bp | GGGCTCTGTAGTACAGAGCTAGCTGGGCATGTTATTTaGGATGTCTTTGATGCTGTGGTTTTCCGAAGCTTG | + |
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Preference number: 3 (lower is better) Translates to: GLCSTELAGHVI*DVFDAVVFRSL Trigger: CAAGCTTCGGAAAACCACAGCATCAAAGACATCCCAAATAACATGCCCAGCTAGCTCTGTACTACAGAGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379108.1 |
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| 3UTR-3UTR CAA 90 bp | ACACCCCAGAGGAAGGACATCTTTAGCGATAGAATTTACATACCGTTAGCTCACCTGGCTGCATGCTTGTaGCCTTTGTTCGTGACACAG | + |
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Preference number: 3 (lower is better) Translates to: TPQRKDIFSDRIYIPLAHLAACL*PLFVTQ Trigger: CTGTGTCACGAACAAAGGCAACAAGCATGCAGCCAG...GTGAGCTAACGGTATGTAAATTCTATCGCTAAAGATGTCCTTCCTCTGGGGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379108.1 |
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| 3UTR GCA 72 bp | TTGTCACTTCCAGGACCAGCCAGGGTTCCTGTAGCCTaGCGGTTGACATCAATGCATAATTTTATGCAAAAT | + |
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Preference number: 3 (lower is better) Translates to: LSLPGPARVPVA*RLTSMHNFMQN Trigger: ATTTTGCATAAAATTATGCATTGATGTCAACCGGCAGGCTACAGGAACCCTGGCTGGTCCTGGAAGTGACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379108.1 |
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| 3UTR-3UTR CAA 90 bp | CCTGTAGCCTGCCGGTTGACATCAATGCATAATTTTATGCAAAATCATCAAGTGTTGCTGGCTGCATGCTaGTTGCCTTTGTTCGTGACA | + |
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Preference number: 3 (lower is better) Translates to: PVACRLTSMHNFMQNHQVLLAAC*LPLFVT Trigger: TGTCACGAACAAAGGCAACAAGCATGCAGCCAGCAA...CACTTGATGATTTTGCATAAAATTATGCATTGATGTCAACCGGCAGGCTACAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379108.1 |
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| 3UTR GCA 72 bp | GAGACTAAGTTACCCATGCTTTGTGGGAACTCAGCCTaGAAAGAATTGAATTTGCTGGTTTTTGTCACTTCC | + |
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Preference number: 3 (lower is better) Translates to: ETKLPMLCGNSA*KELNLLVFVTS Trigger: GGAAGTGACAAAAACCAGCAAATTCAATTCTTTGCAGGCTGAGTTCCCACAAAGCATGGGTAACTTAGTCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000379108.1 |
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| 3UTR TCA 72 bp | AGCGATAGAATTTACATACCGTTAGCTCACAGTAATTaGTTAGTAGCAGGGCTCTGTAGTACAGAGCTAGCT | + |
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Preference number: 3 (lower is better) Translates to: SDRIYIPLAHSN*LVAGLCSTELA Trigger: AGCTAGCTCTGTACTACAGAGCCCTGCTACTAATCAATTACTGTGAGCTAACGGTATGTAAATTCTATCGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000379108.1 |
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| 3UTR-3UTR CAA 90 bp | TCTAATAACAGATACTCTATTGAGACTAAGTTACCCATGCTTTGTGGGAACTCATTATTTGGGATGTCTTaGATGCTGTGGTTTTCCGAA | + |
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Preference number: 3 (lower is better) Translates to: SNNRYSIETKLPMLCGNSLFGMS*MLWFSE Trigger: TTCGGAAAACCACAGCATCAAAGACATCCCAAATAA...TGAGTTCCCACAAAGCATGGGTAACTTAGTCTCAATAGAGTATCTGTTATTAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379108.1 |
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| CDS CCA 90 bp | AGCACGCCTTTATTCAGCCCCAGCCTGGTGATGGAATGGAAACGCTaGCAGCATCGCCTGCGCTGTCAGCTCGGTTTTGCAGTAGGTGGC | + |
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Preference number: 5 (lower is better) Translates to: STPLFSPSLVMEWKR*QHRLRCQLGFAVGG Trigger: GCCACCTACTGCAAAACCGAGCTGACAGCGCAGGCGATGCTGCCAGCGTTTCCATTCCATCACCAGGCTGGGGCTGAATAAAGGCGTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS TCA 90 bp | AGAGACACTACCACACAAGCACGCCTTTATTCAGCCCCAGCCTGGTaGTGGAATGGAAACGCTGGCAGCATCGCCTGCGCTGTCAGCTCG | + |
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Preference number: 5 (lower is better) Translates to: RDTTTQARLYSAPAW*WNGNAGSIACAVSS Trigger: CGAGCTGACAGCGCAGGCGATGCTGCCAGCGTTTCCATTCCATCACCAGGCTGGGGCTGAATAAAGGCGTGCTTGTGTGGTAGTGTCTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CCA 90 bp | TACCACACAAGCACGCCTTTATTCAGCCCCAGCCTGGTGATGGAATaGAAACGCTGGCAGCATCGCCTGCGCTGTCAGCTCGGTTTTGCA | + |
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Preference number: 5 (lower is better) Translates to: YHTSTPLFSPSLVME*KRWQHRLRCQLGFA Trigger: TGCAAAACCGAGCTGACAGCGCAGGCGATGCTGCCAGCGTTTCCATTCCATCACCAGGCTGGGGCTGAATAAAGGCGTGCTTGTGTGGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS GCA 90 bp | GGAATGGAAACGCTGGCAGCATCGCCTGCGCTGTCAGCTCGGTTTTaGAGTAGGTGGCGTATCAGCCTATGTATGCAGGAGCTTTCTGCT | + |
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Preference number: 5 (lower is better) Translates to: GMETLAASPALSARF*SRWRISLCMQELSA Trigger: AGCAGAAAGCTCCTGCATACATAGGCTGATACGCCACCTACTGCAAAACCGAGCTGACAGCGCAGGCGATGCTGCCAGCGTTTCCATTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CCA 90 bp | TTCGAGGTCTGGAGGATCAGCCTGAAATGTTGGTCAGTAGTCCTCTaGTCTGGGTTTTTACAGGAGCTGGAAGTTCTCTTAAAGGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: FEVWRISLKCWSVVL*SGFLQELEVLLKAS Trigger: GGAGGCCTTTAAGAGAACTTCCAGCTCCTGTAAAAACCCAGACCAGAGGACTACTGACCAACATTTCAGGCTGATCCTCCAGACCTCGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CCA 90 bp | GGTCTGGAGGATCAGCCTGAAATGTTGGTCAGTAGTCCTCTGGTCTaGGTTTTTACAGGAGCTGGAAGTTCTCTTAAAGGCCTCCACATT | + |
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Preference number: 5 (lower is better) Translates to: GLEDQPEMLVSSPLV*VFTGAGSSLKGLHI Trigger: AATGTGGAGGCCTTTAAGAGAACTTCCAGCTCCTGTAAAAACCCAGACCAGAGGACTACTGACCAACATTTCAGGCTGATCCTCCAGACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CCA 90 bp | AGTAAGGAGAGTAACTTCGAGGTCTGGAGGATCAGCCTGAAATGTTaGTCAGTAGTCCTCTGGTCTGGGTTTTTACAGGAGCTGGAAGTT | + |
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Preference number: 5 (lower is better) Translates to: SKESNFEVWRISLKC*SVVLWSGFLQELEV Trigger: AACTTCCAGCTCCTGTAAAAACCCAGACCAGAGGACTACTGACCAACATTTCAGGCTGATCCTCCAGACCTCGAAGTTACTCTCCTTACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS GCA 90 bp | CCTGGATTTCACTTCCTCTGCCAGTCCCTTGAGCTGAAAGAATTCTaGTTCTTGTGCAAGAAGTTGATTTTCTCGAAACCCTTCGGGCAA | + |
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Preference number: 5 (lower is better) Translates to: PGFHFLCQSLELKEF*FLCKKLIFSKPFGQ Trigger: TTGCCCGAAGGGTTTCGAGAAAATCAACTTCTTGCACAAGAAGCAGAATTCTTTCAGCTCAAGGGACTGGCAGAGGAAGTGAAATCCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS TCA 90 bp | CCACCAACGTTGAGGGTCATCAGTGTGGATTTGCAGTTCTTTCCTTaGTCAGTATCTTCCAGGCTGTTGTGTTTCCCTTCATACTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: PPTLRVISVDLQFFP*SVSSRLLCFPSYSF Trigger: AAAGGAGTATGAAGGGAAACACAACAGCCTGGAAGATACTGATCAAGGAAAGAACTGCAAATCCACACTGATGACCCTCAACGTTGGTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS TCA 90 bp | ATACCTTCAAGGAAAGTGTCTGGGTACTTGGTCAGTGTTTGTTTTTaGGTAATGTATAAATATCCACCAACGTTGAGGGTCATCAGTGTG | + |
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Preference number: 5 (lower is better) Translates to: IPSRKVSGYLVSVCF*VMYKYPPTLRVISV Trigger: CACACTGATGACCCTCAACGTTGGTGGATATTTATACATTACTCAAAAACAAACACTGACCAAGTACCCAGACACTTTCCTTGAAGGTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CCA 90 bp | AAATCAGGAGCATTACAGAAGATTCTTAATCCTTGTGAACGATCGTaGTTATCTGTTATTTCCAAGAAAGTAGTCTCTCTGGGTGTTAGC | + |
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Preference number: 5 (lower is better) Translates to: KSGALQKILNPCERS*LSVISKKVVSLGVS Trigger: GCTAACACCCAGAGAGACTACTTTCTTGGAAATAACAGATAACCACGATCGTTCACAAGGATTAAGAATCTTCTGTAATGCTCCTGATTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CCA 72 bp | AGCACGCCTTTATTCAGCCCCAGCCTGGTGATGGAATaGAAACGCTGGCAGCATCGCCTGCGCTGTCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: STPLFSPSLVME*KRWQHRLRCQL Trigger: GAGCTGACAGCGCAGGCGATGCTGCCAGCGTTTCCATTCCATCACCAGGCTGGGGCTGAATAAAGGCGTGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS GCA 72 bp | ACGCTGGCAGCATCGCCTGCGCTGTCAGCTCGGTTTTaGAGTAGGTGGCGTATCAGCCTATGTATGCAGGAG | + |
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Preference number: 6 (lower is better) Translates to: TLAASPALSARF*SRWRISLCMQE Trigger: CTCCTGCATACATAGGCTGATACGCCACCTACTGCAAAACCGAGCTGACAGCGCAGGCGATGCTGCCAGCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CCA 72 bp | TTATTCAGCCCCAGCCTGGTGATGGAATGGAAACGCTaGCAGCATCGCCTGCGCTGTCAGCTCGGTTTTGCA | + |
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Preference number: 6 (lower is better) Translates to: LFSPSLVMEWKR*QHRLRCQLGFA Trigger: TGCAAAACCGAGCTGACAGCGCAGGCGATGCTGCCAGCGTTTCCATTCCATCACCAGGCTGGGGCTGAATAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CCA 72 bp | GCATCGCCTGCGCTGTCAGCTCGGTTTTGCAGTAGGTaGCGTATCAGCCTATGTATGCAGGAGCTTTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: ASPALSARFCSR*RISLCMQELSA Trigger: AGCAGAAAGCTCCTGCATACATAGGCTGATACGCCACCTACTGCAAAACCGAGCTGACAGCGCAGGCGATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CCA 72 bp | AGTAACTTCGAGGTCTGGAGGATCAGCCTGAAATGTTaGTCAGTAGTCCTCTGGTCTGGGTTTTTACAGGAG | + |
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Preference number: 6 (lower is better) Translates to: SNFEVWRISLKC*SVVLWSGFLQE Trigger: CTCCTGTAAAAACCCAGACCAGAGGACTACTGACCAACATTTCAGGCTGATCCTCCAGACCTCGAAGTTACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CCA 72 bp | AAGAGTCAGGAGAGTAAGGAGAGTAACTTCGAGGTCTaGAGGATCAGCCTGAAATGTTGGTCAGTAGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: KSQESKESNFEV*RISLKCWSVVL Trigger: GAGGACTACTGACCAACATTTCAGGCTGATCCTCCAGACCTCGAAGTTACTCTCCTTACTCTCCTGACTCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CAA 90 bp | GGGCATGTTATTTGGGATGTCTTTGATGCTGTGGTTTTCCGAAGCTaGCTGGCTGCATGCTTGTTGCCTTTGTTCGTGACACAGGTAATT | + |
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Preference number: 6 (lower is better) Translates to: GHVIWDVFDAVVFRS*LAACLLPLFVTQVI Trigger: AATTACCTGTGTCACGAACAAAGGCAACAAGCATGCAGCCAGCAAGCTTCGGAAAACCACAGCATCAAAGACATCCCAAATAACATGCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CCA 72 bp | GATCAGCCTGAAATGTTGGTCAGTAGTCCTCTGGTCTaGGTTTTTACAGGAGCTGGAAGTTCTCTTAAAGGC | + |
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Preference number: 6 (lower is better) Translates to: DQPEMLVSSPLV*VFTGAGSSLKG Trigger: GCCTTTAAGAGAACTTCCAGCTCCTGTAAAAACCCAGACCAGAGGACTACTGACCAACATTTCAGGCTGATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CCA 72 bp | TGGAGGATCAGCCTGAAATGTTGGTCAGTAGTCCTCTaGTCTGGGTTTTTACAGGAGCTGGAAGTTCTCTTA | + |
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Preference number: 6 (lower is better) Translates to: WRISLKCWSVVL*SGFLQELEVLL Trigger: TAAGAGAACTTCCAGCTCCTGTAAAAACCCAGACCAGAGGACTACTGACCAACATTTCAGGCTGATCCTCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CAA 90 bp | TCCACCAACGTTGAGGGTCATCAGTGTGGATTTGCAGTTCTTTCCTaGATCAGTATCTTCCAGGCTGTTGTGTTTCCCTTCATACTCCTT | + |
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Preference number: 6 (lower is better) Translates to: STNVEGHQCGFAVLS*ISIFQAVVFPFILL Trigger: AAGGAGTATGAAGGGAAACACAACAGCCTGGAAGATACTGATCAAGGAAAGAACTGCAAATCCACACTGATGACCCTCAACGTTGGTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS GCA 72 bp | CACTTCCTCTGCCAGTCCCTTGAGCTGAAAGAATTCTaGTTCTTGTGCAAGAAGTTGATTTTCTCGAAACCC | + |
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Preference number: 6 (lower is better) Translates to: HFLCQSLELKEF*FLCKKLIFSKP Trigger: GGGTTTCGAGAAAATCAACTTCTTGCACAAGAAGCAGAATTCTTTCAGCTCAAGGGACTGGCAGAGGAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CAA 72 bp | GTTGAGGGTCATCAGTGTGGATTTGCAGTTCTTTCCTaGATCAGTATCTTCCAGGCTGTTGTGTTTCCCTTC | + |
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Preference number: 6 (lower is better) Translates to: VEGHQCGFAVLS*ISIFQAVVFPF Trigger: GAAGGGAAACACAACAGCCTGGAAGATACTGATCAAGGAAAGAACTGCAAATCCACACTGATGACCCTCAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS GCA 72 bp | CTCGGTTTTGCAGTAGGTGGCGTATCAGCCTATGTATaGAGGAGCTTTCTGCTTCTTGAAAAGATTATTTCT | + |
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Preference number: 6 (lower is better) Translates to: LGFAVGGVSAYV*RSFLLLEKIIS Trigger: AGAAATAATCTTTTCAAGAAGCAGAAAGCTCCTGCATACATAGGCTGATACGCCACCTACTGCAAAACCGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS TCA 72 bp | AGGAAAGTGTCTGGGTACTTGGTCAGTGTTTGTTTTTaGGTAATGTATAAATATCCACCAACGTTGAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: RKVSGYLVSVCF*VMYKYPPTLRV Trigger: GACCCTCAACGTTGGTGGATATTTATACATTACTCAAAAACAAACACTGACCAAGTACCCAGACACTTTCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CAA 72 bp | ATTGAAAACTCCTCTGGAAATCCATCCAGCCTGCTTTaGGACACCAGAACAATGCGAGACTTTATTTTTGAT | + |
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Preference number: 6 (lower is better) Translates to: IENSSGNPSSLL*DTRTMRDFIFD Trigger: ATCAAAAATAAAGTCTCGCATTGTTCTGGTGTCCAAAAGCAGGCTGGATGGATTTCCAGAGGAGTTTTCAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CAA 90 bp | ATGATAGCCTCAAACTTAAGAGTTTCCAAGGTACAGACAAAGGTGTaGTCTTCCTTTAGTACAAGTCGAGTGCCATTTTCAGACTTTATG | + |
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Preference number: 6 (lower is better) Translates to: MIASNLRVSKVQTKV*SSFSTSRVPFSDFM Trigger: CATAAAGTCTGAAAATGGCACTCGACTTGTACTAAAGGAAGACAACACCTTTGTCTGTACCTTGGAAACTCTTAAGTTTGAGGCTATCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CAA 72 bp | TCAAACTTAAGAGTTTCCAAGGTACAGACAAAGGTGTaGTCTTCCTTTAGTACAAGTCGAGTGCCATTTTCA | + |
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Preference number: 6 (lower is better) Translates to: SNLRVSKVQTKV*SSFSTSRVPFS Trigger: TGAAAATGGCACTCGACTTGTACTAAAGGAAGACAACACCTTTGTCTGTACCTTGGAAACTCTTAAGTTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CAA 90 bp | TTTGACGATATTGAAAACTCCTCTGGAAATCCATCCAGCCTGCTTTaGGACACCAGAACAATGCGAGACTTTATTTTTGATATGAAATCA | + |
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Preference number: 6 (lower is better) Translates to: FDDIENSSGNPSSLL*DTRTMRDFIFDMKS Trigger: TGATTTCATATCAAAAATAAAGTCTCGCATTGTTCTGGTGTCCAAAAGCAGGCTGGATGGATTTCCAGAGGAGTTTTCAATATCGTCAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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| CDS CCA 72 bp | GCATTACAGAAGATTCTTAATCCTTGTGAACGATCGTaGTTATCTGTTATTTCCAAGAAAGTAGTCTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: ALQKILNPCERS*LSVISKKVVSL Trigger: CAGAGAGACTACTTTCTTGGAAATAACAGATAACCACGATCGTTCACAAGGATTAAGAATCTTCTGTAATGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000379108.2 |
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