Pregenerated sensors for KCND3-IT1 (Homo sapiens)
Ensembl gene IDs: ENSG00000232558Ensembl transcript IDs: ENST00000439736.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CAA 90 bp | ATGTTTGCTAAATATCTGCTGAGTGGATTATTGTTTGAAGGTTTTTaGAGCCTTGTGAGATCCTGTCCCCTGTCCTCTGGGCAAGCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: MFAKYLLSGLLFEGF*SLVRSCPLSSGQAA Trigger: AGCTGCTTGCCCAGAGGACAGGGGACAGGATCTCACAAGGCTCAAAAAACCTTCAAACAATAATCCACTCAGCAGATATTTAGCAAACAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000439736.1 |
||
| CDS TCA 72 bp | TTTGGTACTTGCTCCAAACACGATAGTTATGAGAGATaGGGCTGTTTATTCTCTGTTCACCAGCGTAGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: FGTCSKHDSYER*GCLFSVHQRSS Trigger: GGAGCTACGCTGGTGAACAGAGAATAAACAGCCTCATCTCTCATAACTATCGTGTTTGGAGCAAGTACCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439736.1 |
||
| CDS CAA 72 bp | AAATATCTGCTGAGTGGATTATTGTTTGAAGGTTTTTaGAGCCTTGTGAGATCCTGTCCCCTGTCCTCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: KYLLSGLLFEGF*SLVRSCPLSSG Trigger: CCCAGAGGACAGGGGACAGGATCTCACAAGGCTCAAAAAACCTTCAAACAATAATCCACTCAGCAGATATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000439736.1 |
||
| CDS GCA 72 bp | AGTTTTTGTGAGGATTGCATGAGATGGCTTCTAGAATaGATAATACAGTGCTTGGCATTTGGTACTTGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: SFCEDCMRWLLE*IIQCLAFGTCS Trigger: GGAGCAAGTACCAAATGCCAAGCACTGTATTATGCATTCTAGAAGCCATCTCATGCAATCCTCACAAAAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000439736.1 |
||
| CDS CAA 72 bp | TGCATGAGATGGCTTCTAGAATGCATAATACAGTGCTaGGCATTTGGTACTTGCTCCAAACACGATAGTTAT | + |
|
Preference number: 6 (lower is better) Translates to: CMRWLLECIIQC*AFGTCSKHDSY Trigger: ATAACTATCGTGTTTGGAGCAAGTACCAAATGCCAAGCACTGTATTATGCATTCTAGAAGCCATCTCATGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439736.1 |
||