Pregenerated sensors for ITGB1-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000229656Ensembl transcript IDs: ENST00000414157.1, ENST00000450890.5, ENST00000659846.1, ENST00000666298.1
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGCTTCCGAGATGCAGGATCTCCCGGGCTCGAAACGGGACATCAGTaGACAAACGGGAGCGAGGGTCGAACGCGCGGCTCCGAGGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: GFRDAGSPGLETGHQ*TNGSEGRTRGSEEE Trigger: CTCTTCCTCGGAGCCGCGCGTTCGACCCTCGCTCCCGTTTGTCCACTGATGTCCCGTTTCGAGCCCGGGAGATCCTGCATCTCGGAAGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS GCA 90 bp | GGCTCACGGTCCCGATTTGCCTCGGGACTCAGGGGGCTTCCGAGATaGAGGATCTCCCGGGCTCGAAACGGGACATCAGTGGACAAACGG | + |
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Preference number: 5 (lower is better) Translates to: GSRSRFASGLRGLPR*RISRARNGTSVDKR Trigger: CCGTTTGTCCACTGATGTCCCGTTTCGAGCCCGGGAGATCCTGCATCTCGGAAGCCCCCTGAGTCCCGAGGCAAATCGGGACCGTGAGCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS CCA 90 bp | TCACCAGGAACTTCATTCCACTTTTACTTTGAGAAGCTGCCTCTTTaGGGCTTCAGGTTTTGCTGCAGAGGTCACAGGAGGTGGGCAGTG | + |
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Preference number: 5 (lower is better) Translates to: SPGTSFHFYFEKLPL*GFRFCCRGHRRWAV Trigger: CACTGCCCACCTCCTGTGACCTCTGCAGCAAAACCTGAAGCCCCAAAGAGGCAGCTTCTCAAAGTAAAAGTGGAATGAAGTTCCTGGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000414157.1 ENST00000450890.5 ENST00000666298.1 |
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| CDS GCA 90 bp | AACACAGCCATGTTTATTTGCATACATATCATCCACAGCTGCTTTTaGAAGACAAAGGCAGTTGAGCAGTTGCAACAGAGATCACATGGT | + |
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Preference number: 5 (lower is better) Translates to: NTAMFICIHIIHSCF*KTKAVEQLQQRSHG Trigger: ACCATGTGATCTCTGTTGCAACTGCTCAACTGCCTTTGTCTTGCAAAAGCAGCTGTGGATGATATGTATGCAAATAAACATGGCTGTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS TCA 90 bp | TTGCATACATATCATCCACAGCTGCTTTTGCAAGACAAAGGCAGTTaGGCAGTTGCAACAGAGATCACATGGTTTGCAAAGTCAAAGATA | + |
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Preference number: 5 (lower is better) Translates to: LHTYHPQLLLQDKGS*AVATEITWFAKSKI Trigger: TATCTTTGACTTTGCAAACCATGTGATCTCTGTTGCAACTGCTCAACTGCCTTTGTCTTGCAAAAGCAGCTGTGGATGATATGTATGCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS GCA 90 bp | ATATCATCCACAGCTGCTTTTGCAAGACAAAGGCAGTTGAGCAGTTaGAACAGAGATCACATGGTTTGCAAAGTCAAAGATATTTACAAT | + |
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Preference number: 5 (lower is better) Translates to: ISSTAAFARQRQLSS*NRDHMVCKVKDIYN Trigger: ATTGTAAATATCTTTGACTTTGCAAACCATGTGATCTCTGTTGCAACTGCTCAACTGCCTTTGTCTTGCAAAAGCAGCTGTGGATGATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS CAA 72 bp | GCCTCCCTCAGGCGCGCTCCCGCGCAGCCGGTTCCTTaGTCCCGGTCGCACTTCCTGCCCCATCCTCCGCCT | + |
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Preference number: 6 (lower is better) Translates to: ASLRRAPAQPVP*SRSHFLPHPPP Trigger: AGGCGGAGGATGGGGCAGGAAGTGCGACCGGGACAAAGGAACCGGCTGCGCGGGAGCGCGCCTGAGGGAGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS TCA 72 bp | CGTCCGACTCCTCCCGCCCTTCGCAGAGGAGGAAACTaGGGCACGGCGACTGTCTCAACGCAGTCCCGGCCC | + |
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Preference number: 6 (lower is better) Translates to: RPTPPALRRGGN*GTATVSTQSRP Trigger: GGGCCGGGACTGCGTTGAGACAGTCGCCGTGCCTCAGTTTCCTCCTCTGCGAAGGGCGGGAGGAGTCGGACG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS CCA 72 bp | GATGCAGGATCTCCCGGGCTCGAAACGGGACATCAGTaGACAAACGGGAGCGAGGGTCGAACGCGCGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: DAGSPGLETGHQ*TNGSEGRTRGS Trigger: GGAGCCGCGCGTTCGACCCTCGCTCCCGTTTGTCCACTGATGTCCCGTTTCGAGCCCGGGAGATCCTGCATC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS CAA 72 bp | GGTGGAGGCATGTTCCGCACTCCCCTCTTTCCAGCCTaGGGAAGCTGTCTCCTGGGCGTGGTGGCGCATGCC | + |
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Preference number: 6 (lower is better) Translates to: GGGMFRTPLFPA*GSCLLGVVAHA Trigger: GGCATGCGCCACCACGCCCAGGAGACAGCTTCCCAAGGCTGGAAAGAGGGGAGTGCGGAACATGCCTCCACC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414157.1 |
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| CDS GCA 72 bp | TCCCGATTTGCCTCGGGACTCAGGGGGCTTCCGAGATaGAGGATCTCCCGGGCTCGAAACGGGACATCAGTG | + |
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Preference number: 6 (lower is better) Translates to: SRFASGLRGLPR*RISRARNGTSV Trigger: CACTGATGTCCCGTTTCGAGCCCGGGAGATCCTGCATCTCGGAAGCCCCCTGAGTCCCGAGGCAAATCGGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS TCA 72 bp | GTGGCGCATGCCTTTAATCCCAGCTACTCGGGAGGCTaGGGCACAAGAATCGCTTGCATCTGGGAGGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: VAHAFNPSYSGG*GTRIACIWEVE Trigger: CTCCACCTCCCAGATGCAAGCGATTCTTGTGCCTCAGCCTCCCGAGTAGCTGGGATTAAAGGCATGCGCCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000414157.1 |
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| CDS CCA 72 bp | TCTGGCAGGGTGTCTTCGCTTAAGGTCCCCCTGTCCTaGTCCACACCTGGTGTTAGCTCTTGTCAACTCAGC | + |
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Preference number: 6 (lower is better) Translates to: SGRVSSLKVPLS*STPGVSSCQLS Trigger: GCTGAGTTGACAAGAGCTAACACCAGGTGTGGACCAGGACAGGGGGACCTTAAGCGAAGACACCCTGCCAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000414157.1 ENST00000450890.5 ENST00000666298.1 |
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| CDS CAA 72 bp | GGTGGAGGCATGTTCCGCACTCCCCTCTTTCCAGCCTaGGGAAGCTGTCTCCTAGCCATTGTCAATCAATTT | + |
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Preference number: 6 (lower is better) Translates to: GGGMFRTPLFPA*GSCLLAIVNQF Trigger: AAATTGATTGACAATGGCTAGGAGACAGCTTCCCAAGGCTGGAAAGAGGGGAGTGCGGAACATGCCTCCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000450890.5 ENST00000666298.1 |
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| CDS GCA 72 bp | ACACCCATTTTATCCAGGTCCAGGTCCACCTCACACTaGACCGTCTTCCTAATGGAATTTGGTTCACCAGGG | + |
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Preference number: 6 (lower is better) Translates to: TPILSRSRSTSH*TVFLMEFGSPG Trigger: CCCTGGTGAACCAAATTCCATTAGGAAGACGGTGCAGTGTGAGGTGGACCTGGACCTGGATAAAATGGGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000414157.1 ENST00000450890.5 ENST00000666298.1 |
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| CDS CCA 72 bp | CCTTCATTCCACTTTTACTTTGAGAAGCTGCCTCTTTaGGGCTTCAGGTTTTGCTGCAGAGGTCACAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: PSFHFYFEKLPL*GFRFCCRGHRR Trigger: CCTCCTGTGACCTCTGCAGCAAAACCTGAAGCCCCAAAGAGGCAGCTTCTCAAAGTAAAAGTGGAATGAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS CCA 72 bp | ACTTCATTCCACTTTTACTTTGAGAAGCTGCCTCTTTaGGGCTTCAGGTTTTGCTGCAGAGGTCACAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: TSFHFYFEKLPL*GFRFCCRGHRR Trigger: CCTCCTGTGACCTCTGCAGCAAAACCTGAAGCCCCAAAGAGGCAGCTTCTCAAAGTAAAAGTGGAATGAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000414157.1 ENST00000450890.5 ENST00000666298.1 |
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| CDS CAA 72 bp | CACAGCTGCTTTTGCAAGACAAAGGCAGTTGAGCAGTaGCAACAGAGATCACATGGTTTGCAAAGTCAAAGA | + |
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Preference number: 6 (lower is better) Translates to: HSCFCKTKAVEQ*QQRSHGLQSQR Trigger: TCTTTGACTTTGCAAACCATGTGATCTCTGTTGCAACTGCTCAACTGCCTTTGTCTTGCAAAAGCAGCTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS GCA 72 bp | ACAGCTGCTTTTGCAAGACAAAGGCAGTTGAGCAGTTaGAACAGAGATCACATGGTTTGCAAAGTCAAAGAT | + |
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Preference number: 6 (lower is better) Translates to: TAAFARQRQLSS*NRDHMVCKVKD Trigger: ATCTTTGACTTTGCAAACCATGTGATCTCTGTTGCAACTGCTCAACTGCCTTTGTCTTGCAAAAGCAGCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS GCA 72 bp | ACAGCCATGTTTATTTGCATACATATCATCCACAGCTaGTTTTGCAAGACAAAGGCAGTTGAGCAGTTGCAA | + |
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Preference number: 6 (lower is better) Translates to: TAMFICIHIIHS*FCKTKAVEQLQ Trigger: TTGCAACTGCTCAACTGCCTTTGTCTTGCAAAAGCAGCTGTGGATGATATGTATGCAAATAAACATGGCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS CAA 90 bp | TTTGCATACATATCATCCACAGCTGCTTTTGCAAGACAAAGGCAGTaGAGCAGTTGCAACAGAGATCACATGGTTTGCAAAGTCAAAGAT | + |
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Preference number: 6 (lower is better) Translates to: FAYISSTAAFARQRQ*SSCNRDHMVCKVKD Trigger: ATCTTTGACTTTGCAAACCATGTGATCTCTGTTGCAACTGCTCAACTGCCTTTGTCTTGCAAAAGCAGCTGTGGATGATATGTATGCAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS CAA 90 bp | CATATCATCCACAGCTGCTTTTGCAAGACAAAGGCAGTTGAGCAGTaGCAACAGAGATCACATGGTTTGCAAAGTCAAAGATATTTACAA | + |
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Preference number: 6 (lower is better) Translates to: HIIHSCFCKTKAVEQ*QQRSHGLQSQRYLQ Trigger: TTGTAAATATCTTTGACTTTGCAAACCATGTGATCTCTGTTGCAACTGCTCAACTGCCTTTGTCTTGCAAAAGCAGCTGTGGATGATATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS TCA 72 bp | TTTCCACAAATTGTTGGATGGGTTTTTAGACCAACCTaGCCTTCATTCCACTTTTACTTTGAGAAGCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: FPQIVGWVFRPT*PSFHFYFEKLP Trigger: AGGCAGCTTCTCAAAGTAAAAGTGGAATGAAGGTCAGGTTGGTCTAAAAACCCATCCAACAATTTGTGGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS GCA 72 bp | CTTGGGAAGCTGTCTCCTAGCCATTGTCAATCAATTTaGTCCAAAGCCATCACATACATTTATTATCCAATG | + |
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Preference number: 6 (lower is better) Translates to: LGKLSPSHCQSI*SKAITYIYYPM Trigger: CATTGGATAATAAATGTATGTGATGGCTTTGGAGCAAATTGATTGACAATGGCTAGGAGACAGCTTCCCAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000450890.5 ENST00000666298.1 |
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| CDS GCA 72 bp | ATGTTTATTTGCATACATATCATCCACAGCTGCTTTTaGAAGACAAAGGCAGTTGAGCAGTTGCAACAGAGA | + |
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Preference number: 6 (lower is better) Translates to: MFICIHIIHSCF*KTKAVEQLQQR Trigger: TCTCTGTTGCAACTGCTCAACTGCCTTTGTCTTGCAAAAGCAGCTGTGGATGATATGTATGCAAATAAACAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS TCA 72 bp | ACAGTGAGGAAAATATTTATTGGTCCCCCAAATTTATaGTCCCTCCATCTACTCACAGTTCACTTTGCATCT | + |
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Preference number: 6 (lower is better) Translates to: TVRKIFIGPPNL*SLHLLTVHFAS Trigger: AGATGCAAAGTGAACTGTGAGTAGATGGAGGGATCATAAATTTGGGGGACCAATAAATATTTTCCTCACTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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| CDS TCA 72 bp | AGATATTTATTTCTCTCACACATAAAAGGATTCTGGTaGGAAGATTTAACTCTCCTCCCAGGCACAGAGAAA | + |
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Preference number: 6 (lower is better) Translates to: RYLFLSHIKGFW*EDLTLLPGTEK Trigger: TTTCTCTGTGCCTGGGAGGAGAGTTAAATCTTCTCACCAGAATCCTTTTATGTGTGAGAGAAATAAATATCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000414157.1 ENST00000450890.5 ENST00000666298.1 |
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| CDS CAA 90 bp | GTAAGCTTTCTTTCTCTGCGAATGAACAACTTGCTGTGTCCAGATTaGTTTTGTAAGGACAAACAATATGATGCAAAAAGCAATGACATA | + |
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Preference number: 6 (lower is better) Translates to: VSFLSLRMNNLLCPD*FCKDKQYDAKSNDI Trigger: TATGTCATTGCTTTTTGCATCATATTGTTTGTCCTTACAAAACAAATCTGGACACAGCAAGTTGTTCATTCGCAGAGAAAGAAAGCTTAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000659846.1 |
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