RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IRX3 (Homo sapiens)

Ensembl gene IDs: ENSG00000177508

Ensembl transcript IDs: ENST00000329734.4, ENST00000558054.1, ENST00000558180.2

Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp CAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTCTAGGTCGCCATCCCTaGGCGCCGCCCCAGCCAGGG +
Preference number: 4 (lower is better)
Translates to: QTNLTANAGCHRSDLGRALGRHP*APPQPG
Trigger: CCCTGGCTGGGGCGGCGCGCAGGGATGGCGACCTAG...AGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp GACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGGGGGGAAGGACATGGTaGCCCGCGGGGCACGGACGG +
Preference number: 4 (lower is better)
Translates to: DKQTSQRMRGATEATWGGGGRTW*PAGHGR
Trigger: CCGTCCGTGCCCCGCGGGCCACCATGTCCTTCCCCC...CCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTC
66% GC, longest homopolymer 8 nt, total homopolymer stretches 20 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR GCA 90 bp CCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGACGCCGGAGCTGCCTCTaGCCGCTCCTCGCTCCTCAC +
Preference number: 4 (lower is better)
Translates to: PDKQTSQRMRGATEATWGRRSCL*PLLAPH
Trigger: GTGAGGAGCGAGGAGCGGGCAGAGGCAGCTCCGGCG...TCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR GCA 90 bp CAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGAAGGCGGGGTGCGGGTaGGGAAACGCGGCAGCCGCG +
Preference number: 4 (lower is better)
Translates to: QPDKQTSQRMRGATEATWKAGCG*GNAAAA
Trigger: CGCGGCTGCCGCGTTTCCGCACCCGCACCCCGCCTT...CCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp GACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGGCTGGGGGAAGGACATaGTGGCCCGCGGGGCACGGA +
Preference number: 4 (lower is better)
Translates to: DKQTSQRMRGATEATWGGAGGRT*WPAGHG
Trigger: TCCGTGCCCCGCGGGCCACCATGTCCTTCCCCCAGC...CCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp CCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGCGTCCAGATGGTTCTaGGGCCGCCTGGGCACGGGC +
Preference number: 4 (lower is better)
Translates to: PDKQTSQRMRGATEATWGASRWF*GRLGTG
Trigger: GCCCGTGCCCAGGCGGCCCCAGAACCATCTGGACGC...TCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR CCA 90 bp GACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGAGGGCGGCGTCCAGATaGTTCTGGGGCCGCCTGGGC +
Preference number: 4 (lower is better)
Translates to: DKQTSQRMRGATEATWGGRAASR*FWGRLG
Trigger: GCCCAGGCGGCCCCAGAACCATCTGGACGCCGCCCT...CCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR GCA 90 bp CAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTCAAGCCCCTCCTCTCTaGGCCGCGCTCCCTCCTCTC +
Preference number: 4 (lower is better)
Translates to: QTNLTANAGCHRSDLGRAQAPPL*AALPPL
Trigger: GAGAGGAGGGAGCGCGGCGCAGAGAGGAGGGGCTTG...AGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR GCA 90 bp ACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGAGGCCAGGCCTTCAGCGTaGTGGTGCTCTCCCTGGTGG +
Preference number: 4 (lower is better)
Translates to: TNLTANAGCHRSDLGRAEARPSA*WCSPWW
Trigger: CCACCAGGGAGAGCACCAGCACGCTGAAGGCCTGGC...CTCAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp CCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGCCACGGCCACTGGTaGTGGCGCTGGAGCCAGACT +
Preference number: 4 (lower is better)
Translates to: PDKQTSQRMRGATEATWGGHGHW*WRWSQT
Trigger: AGTCTGGCTCCAGCGCCACCACCAGTGGCCGTGGCC...TCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp CCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGTTCTGGGGCCGCCTaGGCACGGGCTGGAAAGCTG +
Preference number: 4 (lower is better)
Translates to: PDKQTSQRMRGATEATWGGSGAA*ARAGKL
Trigger: CAGCTTTCCAGCCCGTGCCCAGGCGGCCCCAGAACC...TCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR CCA 90 bp GACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGGGTTCTGGGGCCGCCTaGGCACGGGCTGGAAAGCTG +
Preference number: 4 (lower is better)
Translates to: DKQTSQRMRGATEATWGGGSGAA*ARAGKL
Trigger: CAGCTTTCCAGCCCGTGCCCAGGCGGCCCCAGAACC...CCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR CCA 90 bp ACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGAGTCAGCTGCGGGAAGATaGGCAGCTCCGCGGCGTAGG +
Preference number: 4 (lower is better)
Translates to: TNLTANAGCHRSDLGRAESAAGR*AAPRRR
Trigger: CCTACGCCGCGGAGCTGCCCATCTTCCCGCAGCTGA...CTCAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000558054.1
CDS-3UTR GCA 90 bp ACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGAGGCTGCTTCGGGCTCCTaGACTGCCCTGGACGCTATG +
Preference number: 4 (lower is better)
Translates to: TNLTANAGCHRSDLGRAEAASGS*TALDAM
Trigger: CATAGCGTCCAGGGCAGTGCAGGAGCCCGAAGCAGC...CTCAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR GCA 90 bp ACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGAGCAGGATCGCTTCCGCTaGTTCGGGCTCCTGCACTGC +
Preference number: 4 (lower is better)
Translates to: TNLTANAGCHRSDLGRAEQDRFR*FGLLHC
Trigger: GCAGTGCAGGAGCCCGAAGCAGCGGAAGCGATCCTG...CTCAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR GCA 90 bp CCAAAATCAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGCCGCGGCCGGATGCTaGACCCCGGGGCTGTCCTTC +
Preference number: 4 (lower is better)
Translates to: PKSTGQTNLTANAGCHRSAAAGC*TPGLSF
Trigger: GAAGGACAGCCCCGGGGTGCAGCATCCGGCCGCGGC...GCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTGATTTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR GCA 90 bp ACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGAGCCTCGTCAGTGCGGCTaGGAGGCGCCCAAGTCATCT +
Preference number: 4 (lower is better)
Translates to: TNLTANAGCHRSDLGRAEPRQCG*EAPKSS
Trigger: AGATGACTTGGGCGCCTCGCAGCCGCACTGACGAGG...CTCAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR GCA 90 bp AAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGCAGATCTTGGGCTTCTaGAGGGCGGAGGCGGGGGCT +
Preference number: 4 (lower is better)
Translates to: KQTSQRMRGATEATWGGLQILGF*RAEAGA
Trigger: AGCCCCCGCCTCCGCCCTGCAGAAGCCCAAGATCTG...CAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp AAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGCGGACGAGAGCACGTTaGACAGGGACCCCGAGGCGT +
Preference number: 4 (lower is better)
Translates to: KQTSQRMRGATEATWGGLRTRAR*TGTPRR
Trigger: ACGCCTCGGGGTCCCTGTCCAACGTGCTCTCGTCCG...CAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp CAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGGTTGTCCGGGCTTGTaGCAGTCTCCGCGAGGGACC +
Preference number: 4 (lower is better)
Translates to: QTNLTANAGCHRSDLGRAGCPGL*QSPRGT
Trigger: GGTCCCTCGCGGAGACTGCCACAAGCCCGGACAACC...AGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR TCA 90 bp AAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGCGGGGCTCCGGGCTCTaGTTGACATTTCTACGGGGC +
Preference number: 4 (lower is better)
Translates to: KQTSQRMRGATEATWGGLRGSGL*LTFLRG
Trigger: GCCCCGTAGAAATGTCAATCAGAGCCCGGAGCCCCG...CAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR GCA 90 bp CAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGTTCCCTCCTCGTCAGTaGGGCTGCGAGGCGCCCAAG +
Preference number: 4 (lower is better)
Translates to: QPDKQTSQRMRGATEATWFPPRQ*GCEAPK
Trigger: CTTGGGCGCCTCGCAGCCGCACTGACGAGGAGGGAA...CCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR GCA 90 bp GACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGTCCAAGCCGGGAACTTaGCCAGCGGCGCTGAGACCA +
Preference number: 4 (lower is better)
Translates to: DKQTSQRMRGATEATWGGSKPGT*PAALRP
Trigger: TGGTCTCAGCGCCGCTGGGCAAGTTCCCGGCTTGGA...CCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR GCA 90 bp ACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGAGACAGCGAATGCGGGGTaGCACAGAAGCGACTTGGGG +
Preference number: 4 (lower is better)
Translates to: TNLTANAGCHRSDLGRAETANAG*HRSDLG
Trigger: CCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGT...CTCAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR CCA 90 bp GACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCGAGGGACCAGATCTTaGGCTTCTGCAGGGCGGAGG +
Preference number: 4 (lower is better)
Translates to: DKQTSQRMRGATEATWGGRGTRS*ASAGRR
Trigger: CCTCCGCCCTGCAGAAGCCCAAGATCTGGTCCCTCG...CCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR GCA 90 bp CAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTACAGCGAATGCGGGGTaGCACAGAAGCGACTTGGGG +
Preference number: 4 (lower is better)
Translates to: QTNLTANAGCHRSDLGRATANAG*HRSDLG
Trigger: CCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGT...AGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR CCA 90 bp ACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGAGGGCAGCCAAAAGTTGTaGACACTTAGGGTGCCGCGC +
Preference number: 4 (lower is better)
Translates to: TNLTANAGCHRSDLGRAEGSQKL*TLRVPR
Trigger: GCGCGGCACCCTAAGTGTCCACAACTTTTGGCTGCC...CTCAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp CCAAAATCAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCCCAGCTGCGGGAAGATaGGCAGCTCCGCGGCGTAGG +
Preference number: 4 (lower is better)
Translates to: PKSTGQTNLTANAGCHRSPAAGR*AAPRRR
Trigger: CCTACGCCGCGGAGCTGCCCATCTTCCCGCAGCTGG...GCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTGATTTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp AAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGCTGGAAACGGCCGGTTaGTCCAAGCCGGGAACTTGC +
Preference number: 4 (lower is better)
Translates to: KQTSQRMRGATEATWGGLLETAG*SKPGTC
Trigger: GCAAGTTCCCGGCTTGGACCAACCGGCCGTTTCCAG...CAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp GACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGGCCACAGAAGCGACTTaGGGAGGGCTGAGGAGGACT +
Preference number: 4 (lower is better)
Translates to: DKQTSQRMRGATEATWGGATEAT*GGLRRT
Trigger: AGTCCTCCTCAGCCCTCCCCAAGTCGCTTCTGTGGC...CCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR TCA 90 bp CAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGCTCCGGGCTCTGATTaGCATTTCTACGGGGCGCAA +
Preference number: 4 (lower is better)
Translates to: QTNLTANAGCHRSDLGRAAPGSD*HFYGAQ
Trigger: TTGCGCCCCGTAGAAATGTCAATCAGAGCCCGGAGC...AGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR GCA 90 bp CAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGTCCTTCAGCTCATACTaGGCGCCCAGCTGCGGGAAG +
Preference number: 4 (lower is better)
Translates to: QPDKQTSQRMRGATEATWSFSSY*APSCGK
Trigger: CTTCCCGCAGCTGGGCGCGCAGTATGAGCTGAAGGA...CCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR GCA 90 bp ACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGAGAAACCTCACAGCGAATaGGGGGTGCCACAGAAGCGA +
Preference number: 4 (lower is better)
Translates to: TNLTANAGCHRSDLGRAEKPHSE*GVPQKR
Trigger: TCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTT...CTCAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR GCA 90 bp CAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTACTACAGCGATCAGCTaGGGGAAGATGGGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: QTNLTANAGCHRSDLGRATTAIS*GKMGSS
Trigger: GGAGCTGCCCATCTTCCCGCAGCTGATCGCTGTAGT...AGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000558054.1
CDS-3UTR CCA 90 bp CAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGCAGGTCCGAACAGATTaGCGGAGATTCCCGGGGCTC +
Preference number: 4 (lower is better)
Translates to: QPDKQTSQRMRGATEATWQVRTD*RRFPGL
Trigger: GAGCCCCGGGAATCTCCGCCAATCTGTTCGGACCTG...CCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp GACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCGCCTGGGCACGGGCTaGAAAGCTGTCTTGAGTAAC +
Preference number: 4 (lower is better)
Translates to: DKQTSQRMRGATEATWGGRLGTG*KAVLSN
Trigger: GTTACTCAAGACAGCTTTCCAGCCCGTGCCCAGGCG...CCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR CCA 90 bp CAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGCCACAGAAGCGACTTaGGGAGGGCTGAGGAGGACT +
Preference number: 4 (lower is better)
Translates to: QPDKQTSQRMRGATEATWATEAT*GGLRRT
Trigger: AGTCCTCCTCAGCCCTCCCCAAGTCGCTTCTGTGGC...CCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR GCA 90 bp CCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGATCTCACGAGGGCTTTTaGTCTCCGGTCCGTTCCCTT +
Preference number: 4 (lower is better)
Translates to: PDKQTSQRMRGATEATWGSHEGF*SPVRSL
Trigger: AAGGGAACGGACCGGAGAGCAAAAGCCCTCGTGAGA...TCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR GCA 90 bp CCAAAATCAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCCTCCTCGCTCCTCACTaGCCTCCTCTCCCCAGCAGT +
Preference number: 4 (lower is better)
Translates to: PKSTGQTNLTANAGCHRSLLAPH*PPLPSS
Trigger: ACTGCTGGGGAGAGGAGGGCAGTGAGGAGCGAGGAG...GCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTGATTTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR GCA 90 bp AAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGAAACCTCACAGCGAATaGGGGGTGCCACAGAAGCGA +
Preference number: 4 (lower is better)
Translates to: KQTSQRMRGATEATWGGLKPHSE*GVPQKR
Trigger: TCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTT...CAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR CCA 90 bp CCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGATATTGGTATCCCAGCTaGGGGAAGGACATGGTGGCC +
Preference number: 4 (lower is better)
Translates to: PDKQTSQRMRGATEATWGYWYPS*GKDMVA
Trigger: GGCCACCATGTCCTTCCCCCAGCTGGGATACCAATA...TCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp AAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGTTTTGGAGTCCGAAATaGGTCCCAGGCCTAGGTCGC +
Preference number: 4 (lower is better)
Translates to: KQTSQRMRGATEATWGGLFWSPK*VPGLGR
Trigger: GCGACCTAGGCCTGGGACCCATTTCGGACTCCAAAA...CAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR TCA 90 bp AAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGCGACTTGGGGAGGGCTaGGGAGGACTGGTTTTATTT +
Preference number: 4 (lower is better)
Translates to: KQTSQRMRGATEATWGGLRLGEG*GGLVLF
Trigger: AAATAAAACCAGTCCTCCTCAGCCCTCCCCAAGTCG...CAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR CCA 90 bp CCAAAATCAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCACAGCTCAGGCTCGGTaGCCGCGCCGTCTAAGTTCT +
Preference number: 4 (lower is better)
Translates to: PKSTGQTNLTANAGCHRSTAQAR*PRRLSS
Trigger: AGAACTTAGACGGCGCGGCCACCGAGCCTGAGCTGT...GCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTGATTTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp ACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGAGCCGAGTCGCTATTTTTaGAGTCCGAAATGGGTCCCA +
Preference number: 4 (lower is better)
Translates to: TNLTANAGCHRSDLGRAEPSRYF*SPKWVP
Trigger: TGGGACCCATTTCGGACTCCAAAAATAGCGACTCGG...CTCAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp CCAAAATCAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCAGCGGGCGGATGTATTaGTATCCCAGCTGGGGGAAG +
Preference number: 4 (lower is better)
Translates to: PKSTGQTNLTANAGCHRSSGRMY*YPSWGK
Trigger: CTTCCCCCAGCTGGGATACCAATACATCCGCCCGCT...GCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTGATTTTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp AAAATCAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACGCCTGGGCACGGGCTaGAAAGCTGTCTTGAGTAAC +
Preference number: 4 (lower is better)
Translates to: KINRTNKPHSECGVPQKRRLGTG*KAVLSN
Trigger: GTTACTCAAGACAGCTTTCCAGCCCGTGCCCAGGCG...TCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTGATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR TCA 90 bp AAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGGCTGGAAAGCTGTCTTaGGTAACTTTTTCTCCACTT +
Preference number: 4 (lower is better)
Translates to: KQTSQRMRGATEATWGGLAGKLS*VTFSPL
Trigger: AAGTGGAGAAAAAGTTACTCAAGACAGCTTTCCAGC...CAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR GCA 90 bp TTGCTTTTAGGTATTTATACACGGACATGCTTACAAGTTGTAACTATACAGAGCCTCGGCCGCCGGAGCTaGCTCTGCCCGCTCCTCGCT +
Preference number: 4 (lower is better)
Translates to: LLLGIYTRTCLQVVTIQSLGRRS*LCPLLA
Trigger: AGCGAGGAGCGGGCAGAGGCAGCTCCGGCGGCCGAG...GCTCTGTATAGTTACAACTTGTAAGCATGTCCGTGTATAAATACCTAAAAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp TTGCTTTTAGGTATTTATACACGGACATGCTTACAAGTTGTAACTATACAGAGCCGAGGCCACGGCCACTaGTGGTGGCGCTGGAGCCAG +
Preference number: 4 (lower is better)
Translates to: LLLGIYTRTCLQVVTIQSRGHGH*WWRWSQ
Trigger: CTGGCTCCAGCGCCACCACCAGTGGCCGTGGCCTCG...GCTCTGTATAGTTACAACTTGTAAGCATGTCCGTGTATAAATACCTAAAAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp TTGCTTTTAGGTATTTATACACGGACATGCTTACAAGTTGTAACTATACAGAGCGCCGGGCGGTGGGCCTaGAAACGGCCGGTTGGTCCA +
Preference number: 4 (lower is better)
Translates to: LLLGIYTRTCLQVVTIQSAGRWA*KRPVGP
Trigger: TGGACCAACCGGCCGTTTCCAGGCCCACCGCCCGGC...GCTCTGTATAGTTACAACTTGTAAGCATGTCCGTGTATAAATACCTAAAAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp TTGCTTTTAGGTATTTATACACGGACATGCTTACAAGTTGTAACTATACAGAGCGCGTCCAGATGGTTCTaGGGCCGCCTGGGCACGGGC +
Preference number: 4 (lower is better)
Translates to: LLLGIYTRTCLQVVTIQSASRWF*GRLGTG
Trigger: GCCCGTGCCCAGGCGGCCCCAGAACCATCTGGACGC...GCTCTGTATAGTTACAACTTGTAAGCATGTCCGTGTATAAATACCTAAAAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR CCA 90 bp TTGCTTTTAGGTATTTATACACGGACATGCTTACAAGTTGTAACTATACAGAGCAGGGCGGCGTCCAGATaGTTCTGGGGCCGCCTGGGC +
Preference number: 4 (lower is better)
Translates to: LLLGIYTRTCLQVVTIQSRAASR*FWGRLG
Trigger: GCCCAGGCGGCCCCAGAACCATCTGGACGCCGCCCT...GCTCTGTATAGTTACAACTTGTAAGCATGTCCGTGTATAAATACCTAAAAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR CCA 90 bp CCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAAGGGCTGAGGAGGACTaGTTTTATTTCTTTTTCTTA +
Preference number: 4 (lower is better)
Translates to: PDKQTSQRMRGATEATWGRAEED*FYFFFL
Trigger: TAAGAAAAAGAAATAAAACCAGTCCTCCTCAGCCCT...TCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR TCA 90 bp TTGCTTTTAGGTATTTATACACGGACATGCTTACAAGTTGTAACTATACAGAGCCTTGCCCAGCGGCGCTaGGACCAGTCTGTGAGCGGC +
Preference number: 4 (lower is better)
Translates to: LLLGIYTRTCLQVVTIQSLAQRR*DQSVSG
Trigger: GCCGCTCACAGACTGGTCTCAGCGCCGCTGGGCAAG...GCTCTGTATAGTTACAACTTGTAAGCATGTCCGTGTATAAATACCTAAAAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR GCA 90 bp TTGCTTTTAGGTATTTATACACGGACATGCTTACAAGTTGTAACTATACAGAGCTACTGCGCGCCCAGCTaGGGGAAGATGGGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LLLGIYTRTCLQVVTIQSYCAPS*GKMGSS
Trigger: GGAGCTGCCCATCTTCCCGCAGCTGGGCGCGCAGTA...GCTCTGTATAGTTACAACTTGTAAGCATGTCCGTGTATAAATACCTAAAAGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp TTGCTTTTAGGTATTTATACACGGACATGCTTACAAGTTGTAACTATACAGAGCCACGGCCACTGGTGGTaGCGCTGGAGCCAGACTCAG +
Preference number: 4 (lower is better)
Translates to: LLLGIYTRTCLQVVTIQSHGHWW*RWSQTQ
Trigger: CTGAGTCTGGCTCCAGCGCCACCACCAGTGGCCGTG...GCTCTGTATAGTTACAACTTGTAAGCATGTCCGTGTATAAATACCTAAAAGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CCA 90 bp AAAATCAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGAAGGGCTGAGGAGGACTaGTTTTATTTCTTTTTCTTA +
Preference number: 4 (lower is better)
Translates to: KINRTNKPHSECGVPQKRRAEED*FYFFFL
Trigger: TAAGAAAAAGAAATAAAACCAGTCCTCCTCAGCCCT...TCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTGATTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS TCA 90 bp GGCCGCGCTGCCGCCCGCGCTGCGCTGTGCTCCGCGTTCGCCTATTaGTCTGCTCCGCGGCGGCGACGGCGGCGGCGAGGGCGGCGGCGA +
Preference number: 5 (lower is better)
Translates to: GRAAARAALCSAFAY*SAPRRRRRRRGRRR
Trigger: TCGCCGCCGCCCTCGCCGCCGCCGTCGCCGCCGCGGAGCAGATCAATAGGCGAACGCGGAGCACAGCGCAGCGCGGGCGGCAGCGCGGCC
80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS GCA 90 bp GGGCTCCGGCGCGCATCGGGGGCTGGGCCGGGCTTGGGGCCGCGCTaGCGCCCGCGCTGCGCTGTGCTCCGCGTTCGCCTATTGATCTGC +
Preference number: 5 (lower is better)
Translates to: GLRRASGAGPGLGPR*RPRCAVLRVRLLIC
Trigger: GCAGATCAATAGGCGAACGCGGAGCACAGCGCAGCGCGGGCGGCAGCGCGGCCCCAAGCCCGGCCCAGCCCCCGATGCGCGCCGGAGCCC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS GCA 90 bp CGGGCGGTGGGCCTGGAAACGGCCGGTTGGTCCAAGCCGGGAACTTaGCCAGCGGCGCTGAGACCAGTCTGTGAGCGGCGGCGGCGGCGG +
Preference number: 5 (lower is better)
Translates to: RAVGLETAGWSKPGT*PAALRPVCERRRRR
Trigger: CCGCCGCCGCCGCCGCTCACAGACTGGTCTCAGCGCCGCTGGGCAAGTTCCCGGCTTGGACCAACCGGCCGTTTCCAGGCCCACCGCCCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS CCA 90 bp GGCAGAGCCCAGCAGGGAGAGCGGGTGCAGGCGGGGGCCGGGCGGTaGGCCTGGAAACGGCCGGTTGGTCCAAGCCGGGAACTTGCCCAG +
Preference number: 5 (lower is better)
Translates to: GRAQQGERVQAGAGR*AWKRPVGPSRELAQ
Trigger: CTGGGCAAGTTCCCGGCTTGGACCAACCGGCCGTTTCCAGGCCCACCGCCCGGCCCCCGCCTGCACCCGCTCTCCCTGCTGGGCTCTGCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS CCA 90 bp CAGCGGCCGCGGCGTAGGGCGCCCCGTACACGGACGAGAGCACGTTaGACAGGGACCCCGAGGCGTTCAGCTCCGAGGCTCCGGCACCCA +
Preference number: 5 (lower is better)
Translates to: QRPRRRAPRTRTRAR*TGTPRRSAPRLRHP
Trigger: TGGGTGCCGGAGCCTCGGAGCTGAACGCCTCGGGGTCCCTGTCCAACGTGCTCTCGTCCGTGTACGGGGCGCCCTACGCCGCGGCCGCTG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS CCA 90 bp GCGGGTGCAGGCGGGGGCCGGGCGGTGGGCCTGGAAACGGCCGGTTaGTCCAAGCCGGGAACTTGCCCAGCGGCGCTGAGACCAGTCTGT +
Preference number: 5 (lower is better)
Translates to: AGAGGGRAVGLETAG*SKPGTCPAALRPVC
Trigger: ACAGACTGGTCTCAGCGCCGCTGGGCAAGTTCCCGGCTTGGACCAACCGGCCGTTTCCAGGCCCACCGCCCGGCCCCCGCCTGCACCCGC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS TCA 90 bp TTGGTCCAAGCCGGGAACTTGCCCAGCGGCGCTGAGACCAGTCTGTaGGCGGCGGCGGCGGCGGCGGCCGGAGAGAGCTGCAGGGCGGAA +
Preference number: 5 (lower is better)
Translates to: LVQAGNLPSGAETSL*AAAAAAAGESCRAE
Trigger: TTCCGCCCTGCAGCTCTCTCCGGCCGCCGCCGCCGCCGCCGCTCACAGACTGGTCTCAGCGCCGCTGGGCAAGTTCCCGGCTTGGACCAA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS TCA 90 bp TGGAAACGGCCGGTTGGTCCAAGCCGGGAACTTGCCCAGCGGCGCTaGGACCAGTCTGTGAGCGGCGGCGGCGGCGGCGGCCGGAGAGAG +
Preference number: 5 (lower is better)
Translates to: WKRPVGPSRELAQRR*DQSVSGGGGGGRRE
Trigger: CTCTCTCCGGCCGCCGCCGCCGCCGCCGCTCACAGACTGGTCTCAGCGCCGCTGGGCAAGTTCCCGGCTTGGACCAACCGGCCGTTTCCA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS GCA 90 bp TATTTTTGGAGTCCGAAATGGGTCCCAGGCCTAGGTCGCCATCCCTaGGCGCCGCCCCAGCCAGGGACAGCTCAGGCTCGGTGGCCGCGC +
Preference number: 5 (lower is better)
Translates to: YFWSPKWVPGLGRHP*APPQPGTAQARWPR
Trigger: GCGCGGCCACCGAGCCTGAGCTGTCCCTGGCTGGGGCGGCGCGCAGGGATGGCGACCTAGGCCTGGGACCCATTTCGGACTCCAAAAATA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS CCA 90 bp CGCCATCCCTGCGCGCCGCCCCAGCCAGGGACAGCTCAGGCTCGGTaGCCGCGCCGTCTAAGTTCTCCAAATCGATCTCCTCGTCCTCGT +
Preference number: 5 (lower is better)
Translates to: RHPCAPPQPGTAQAR*PRRLSSPNRSPRPR
Trigger: ACGAGGACGAGGAGATCGATTTGGAGAACTTAGACGGCGCGGCCACCGAGCCTGAGCTGTCCCTGGCTGGGGCGGCGCGCAGGGATGGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS-3UTR CAA 90 bp CAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGGCGAGCGGCGCGGGTaGTCCGGGCTTGTGGCAGTC +
Preference number: 5 (lower is better)
Translates to: QTNLTANAGCHRSDLGRAGERRG*SGLVAV
Trigger: GACTGCCACAAGCCCGGACAACCCGCGCCGCTCGCC...AGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CAA 90 bp CAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTTCCCTGGTGGCGTTCTaGGGACGGGACGGGTCCCCG +
Preference number: 5 (lower is better)
Translates to: QTNLTANAGCHRSDLGRASLVAF*GRDGSP
Trigger: CGGGGACCCGTCCCGTCCCAAGAACGCCACCAGGGA...AGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CAA 90 bp AAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTGACGGACGAGAGCACGTaGGACAGGGACCCCGAGGCG +
Preference number: 5 (lower is better)
Translates to: KQTSQRMRGATEATWGGLTDEST*DRDPEA
Trigger: CGCCTCGGGGTCCCTGTCCAACGTGCTCTCGTCCGT...CAGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CAA 90 bp CAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGCGGGTTGTCCGGGCTaGTGGCAGTCTCCGCGAGGG +
Preference number: 5 (lower is better)
Translates to: QPDKQTSQRMRGATEATWAGCPG*WQSPRG
Trigger: CCCTCGCGGAGACTGCCACAAGCCCGGACAACCCGC...CCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CAA 90 bp CAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGCGAGGGACCAGATCTaGGGCTTCTGCAGGGCGGAG +
Preference number: 5 (lower is better)
Translates to: QPDKQTSQRMRGATEATWARDQI*GFCRAE
Trigger: CTCCGCCCTGCAGAAGCCCAAGATCTGGTCCCTCGC...CCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS CCA 90 bp GCCGGTCCTCTAAGCCCTCAGAGCTATCTTCCGAGTCGCTATTTTTaGAGTCCGAAATGGGTCCCAGGCCTAGGTCGCCATCCCTGCGCG +
Preference number: 5 (lower is better)
Translates to: AGPLSPQSYLPSRYF*SPKWVPGLGRHPCA
Trigger: CGCGCAGGGATGGCGACCTAGGCCTGGGACCCATTTCGGACTCCAAAAATAGCGACTCGGAAGATAGCTCTGAGGGCTTAGAGGACCGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS-3UTR CAA 90 bp CCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGATCAGGTCCGAACAGATaGGCGGAGATTCCCGGGGCT +
Preference number: 5 (lower is better)
Translates to: PDKQTSQRMRGATEATWGSGPNR*AEIPGA
Trigger: AGCCCCGGGAATCTCCGCCAATCTGTTCGGACCTGA...TCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CAA 90 bp CAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGTGCCACAGAAGCGACTaGGGGAGGGCTGAGGAGGAC +
Preference number: 5 (lower is better)
Translates to: QPDKQTSQRMRGATEATWCHRSD*GRAEED
Trigger: GTCCTCCTCAGCCCTCCCCAAGTCGCTTCTGTGGCA...CCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS-3UTR CAA 90 bp CAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCGACTTGGGGAGGGCTAAGCGGGCGGATGTATaGGTATCCCAGCTGGGGGAA +
Preference number: 5 (lower is better)
Translates to: QTNLTANAGCHRSDLGRAKRADV*VSQLGE
Trigger: TTCCCCCAGCTGGGATACCAATACATCCGCCCGCTT...AGCCCTCCCCAAGTCGCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CAA 90 bp CCAAAATCAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCCCTGGAAACGGCCGGTaGGTCCAAGCCGGGAACTTG +
Preference number: 5 (lower is better)
Translates to: PKSTGQTNLTANAGCHRSPGNGR*VQAGNL
Trigger: CAAGTTCCCGGCTTGGACCAACCGGCCGTTTCCAGG...GCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTGATTTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CAA 90 bp CCAAAATCAACCGGACAAACAAACCTCACAGCGAATGCGGGGTGCCACAGAAGCTCCGAGTCGCTATTTTaGGAGTCCGAAATGGGTCCC +
Preference number: 5 (lower is better)
Translates to: PKSTGQTNLTANAGCHRSSESLF*ESEMGP
Trigger: GGGACCCATTTCGGACTCCAAAAATAGCGACTCGGA...GCTTCTGTGGCACCCCGCATTCGCTGTGAGGTTTGTTTGTCCGGTTGATTTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CAA 90 bp TTGCTTTTAGGTATTTATACACGGACATGCTTACAAGTTGTAACTATACAGAGCGTCCAAGCCGGGAACTaGCCCAGCGGCGCTGAGACC +
Preference number: 5 (lower is better)
Translates to: LLLGIYTRTCLQVVTIQSVQAGN*PSGAET
Trigger: GGTCTCAGCGCCGCTGGGCAAGTTCCCGGCTTGGAC...GCTCTGTATAGTTACAACTTGTAAGCATGTCCGTGTATAAATACCTAAAAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS-3UTR CAA 90 bp TTGCTTTTAGGTATTTATACACGGACATGCTTACAAGTTGTAACTATACAGAGCTTCTCACGAGGGCTTTaGCTCTCCGGTCCGTTCCCT +
Preference number: 5 (lower is better)
Translates to: LLLGIYTRTCLQVVTIQSFSRGL*LSGPFP
Trigger: AGGGAACGGACCGGAGAGCAAAAGCCCTCGTGAGAA...GCTCTGTATAGTTACAACTTGTAAGCATGTCCGTGTATAAATACCTAAAAGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS CAA 90 bp GAAGATGGGCAGCTCCGCGGCGTAGGGCAGGAAGGCGCCGTAGCCTaGGGCGGCGGCGGCCGCAGCGGCCGCGGCGTAGGGCGCCCCGTA +
Preference number: 6 (lower is better)
Translates to: EDGQLRGVGQEGAVA*GGGGRSGRGVGRPV
Trigger: TACGGGGCGCCCTACGCCGCGGCCGCTGCGGCCGCCGCCGCCCAAGGCTACGGCGCCTTCCTGCCCTACGCCGCGGAGCTGCCCATCTTC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS TCA 72 bp GCCGGGAACTTGCCCAGCGGCGCTGAGACCAGTCTGTaGGCGGCGGCGGCGGCGGCGGCCGGAGAGAGCTGC +
Preference number: 6 (lower is better)
Translates to: AGNLPSGAETSL*AAAAAAAGESC
Trigger: GCAGCTCTCTCCGGCCGCCGCCGCCGCCGCCGCTCACAGACTGGTCTCAGCGCCGCTGGGCAAGTTCCCGGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS TCA 72 bp CCGGTTGGTCCAAGCCGGGAACTTGCCCAGCGGCGCTaGGACCAGTCTGTGAGCGGCGGCGGCGGCGGCGGC +
Preference number: 6 (lower is better)
Translates to: PVGPSRELAQRR*DQSVSGGGGGG
Trigger: GCCGCCGCCGCCGCCGCCGCTCACAGACTGGTCTCAGCGCCGCTGGGCAAGTTCCCGGCTTGGACCAACCGG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS GCA 72 bp GCTGGGCCGGGCTTGGGGCCGCGCTGCCGCCCGCGCTaGGCTGTGCTCCGCGTTCGCCTATTGATCTGCTCC +
Preference number: 6 (lower is better)
Translates to: AGPGLGPRCRPR*AVLRVRLLICS
Trigger: GGAGCAGATCAATAGGCGAACGCGGAGCACAGCGCAGCGCGGGCGGCAGCGCGGCCCCAAGCCCGGCCCAGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS CCA 72 bp GGCGGGGGCCGGGCGGTGGGCCTGGAAACGGCCGGTTaGTCCAAGCCGGGAACTTGCCCAGCGGCGCTGAGA +
Preference number: 6 (lower is better)
Translates to: GGGRAVGLETAG*SKPGTCPAALR
Trigger: TCTCAGCGCCGCTGGGCAAGTTCCCGGCTTGGACCAACCGGCCGTTTCCAGGCCCACCGCCCGGCCCCCGCC
75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS CAA 72 bp AGGCGGGGGCCGGGCGGTGGGCCTGGAAACGGCCGGTaGGTCCAAGCCGGGAACTTGCCCAGCGGCGCTGAG +
Preference number: 6 (lower is better)
Translates to: RRGPGGGPGNGR*VQAGNLPSGAE
Trigger: CTCAGCGCCGCTGGGCAAGTTCCCGGCTTGGACCAACCGGCCGTTTCCAGGCCCACCGCCCGGCCCCCGCCT
75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS CAA 90 bp AGCGGGTGCAGGCGGGGGCCGGGCGGTGGGCCTGGAAACGGCCGGTaGGTCCAAGCCGGGAACTTGCCCAGCGGCGCTGAGACCAGTCTG +
Preference number: 6 (lower is better)
Translates to: SGCRRGPGGGPGNGR*VQAGNLPSGAETSL
Trigger: CAGACTGGTCTCAGCGCCGCTGGGCAAGTTCCCGGCTTGGACCAACCGGCCGTTTCCAGGCCCACCGCCCGGCCCCCGCCTGCACCCGCT
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS GCA 72 bp GGGTGCGGGTGCGGAAACGCGGCAGCCGCGGCCGGATaGTGCACCCCGGGGCTGTCCTTCAGCTCATACTGC +
Preference number: 6 (lower is better)
Translates to: GCGCGNAAAAAG*CTPGLSFSSYC
Trigger: GCAGTATGAGCTGAAGGACAGCCCCGGGGTGCAGCATCCGGCCGCGGCTGCCGCGTTTCCGCACCCGCACCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS CCA 72 bp CGGCGTAGGGCGCCCCGTACACGGACGAGAGCACGTTaGACAGGGACCCCGAGGCGTTCAGCTCCGAGGCTC +
Preference number: 6 (lower is better)
Translates to: RRRAPRTRTRAR*TGTPRRSAPRL
Trigger: GAGCCTCGGAGCTGAACGCCTCGGGGTCCCTGTCCAACGTGCTCTCGTCCGTGTACGGGGCGCCCTACGCCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS GCA 72 bp GGCCTGGAAACGGCCGGTTGGTCCAAGCCGGGAACTTaGCCAGCGGCGCTGAGACCAGTCTGTGAGCGGCGG +
Preference number: 6 (lower is better)
Translates to: GLETAGWSKPGT*PAALRPVCERR
Trigger: CCGCCGCTCACAGACTGGTCTCAGCGCCGCTGGGCAAGTTCCCGGCTTGGACCAACCGGCCGTTTCCAGGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS CCA 72 bp GGCGGCGGCGAGGAGCCAGGTCAGGTCCGAACAGATTaGCGGAGATTCCCGGGGCTCCGGGCTCTGATTGAC +
Preference number: 6 (lower is better)
Translates to: GGGEEPGQVRTD*RRFPGLRALID
Trigger: GTCAATCAGAGCCCGGAGCCCCGGGAATCTCCGCCAATCTGTTCGGACCTGACCTGGCTCCTCGCCGCCGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS CAA 72 bp CCCCGGGCGCTCGGACGGGTAAAGCGGGCGGATGTATaGGTATCCCAGCTGGGGGAAGGACATGGTGGCCCG +
Preference number: 6 (lower is better)
Translates to: PRALGRVKRADV*VSQLGEGHGGP
Trigger: CGGGCCACCATGTCCTTCCCCCAGCTGGGATACCAATACATCCGCCCGCTTTACCCGTCCGAGCGCCCGGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS CCA 72 bp TGCGCGCCGCCCCAGCCAGGGACAGCTCAGGCTCGGTaGCCGCGCCGTCTAAGTTCTCCAAATCGATCTCCT +
Preference number: 6 (lower is better)
Translates to: CAPPQPGTAQAR*PRRLSSPNRSP
Trigger: AGGAGATCGATTTGGAGAACTTAGACGGCGCGGCCACCGAGCCTGAGCTGTCCCTGGCTGGGGCGGCGCGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS GCA 72 bp CGCGCTCGCTCCCATAAGCGTTTCCCTCCTCGTCAGTaGGGCTGCGAGGCGCCCAAGTCATCTTATTCTCCT +
Preference number: 6 (lower is better)
Translates to: RARSHKRFPPRQ*GCEAPKSSYSP
Trigger: AGGAGAATAAGATGACTTGGGCGCCTCGCAGCCGCACTGACGAGGAGGGAAACGCTTATGGGAGCGAGCGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS CAA 90 bp GGCCGGTCCTCTAAGCCCTCAGAGCTATCTTCCGAGTCGCTATTTTaGGAGTCCGAAATGGGTCCCAGGCCTAGGTCGCCATCCCTGCGC +
Preference number: 6 (lower is better)
Translates to: GRSSKPSELSSESLF*ESEMGPRPRSPSLR
Trigger: GCGCAGGGATGGCGACCTAGGCCTGGGACCCATTTCGGACTCCAAAAATAGCGACTCGGAAGATAGCTCTGAGGGCTTAGAGGACCGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS CCA 72 bp GCGTCCAGATGGTTCTGGGGCCGCCTGGGCACGGGCTaGAAAGCTGTCTTGAGTAACTTTTTCTCCACTTCC +
Preference number: 6 (lower is better)
Translates to: ASRWFWGRLGTG*KAVLSNFFSTS
Trigger: GGAAGTGGAGAAAAAGTTACTCAAGACAGCTTTCCAGCCCGTGCCCAGGCGGCCCCAGAACCATCTGGACGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558054.1
CDS CCA 72 bp CTAAGCCCTCAGAGCTATCTTCCGAGTCGCTATTTTTaGAGTCCGAAATGGGTCCCAGGCCTAGGTCGCCAT +
Preference number: 6 (lower is better)
Translates to: LSPQSYLPSRYF*SPKWVPGLGRH
Trigger: ATGGCGACCTAGGCCTGGGACCCATTTCGGACTCCAAAAATAGCGACTCGGAAGATAGCTCTGAGGGCTTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS CCA 72 bp CTCAACCTCGGGGTTTCTTACCGCCTGGGCACGGGCTaGAAAGCTGTCTTGAGTAACTTTTTCTCCACTTCC +
Preference number: 6 (lower is better)
Translates to: LNLGVSYRLGTG*KAVLSNFFSTS
Trigger: GGAAGTGGAGAAAAAGTTACTCAAGACAGCTTTCCAGCCCGTGCCCAGGCGGTAAGAAACCCCGAGGTTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000558180.2
CDS CAA 72 bp TCTAAGCCCTCAGAGCTATCTTCCGAGTCGCTATTTTaGGAGTCCGAAATGGGTCCCAGGCCTAGGTCGCCA +
Preference number: 6 (lower is better)
Translates to: SKPSELSSESLF*ESEMGPRPRSP
Trigger: TGGCGACCTAGGCCTGGGACCCATTTCGGACTCCAAAAATAGCGACTCGGAAGATAGCTCTGAGGGCTTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000329734.4
ENST00000558180.2
CDS GCA 72 bp CTCTCCCCTTCTCTTTCCCTTTCTCACGAGGGCTTTTaGTCTCCGGTCCGTTCCCTTCACTTCTTCCTTTCT +
Preference number: 6 (lower is better)
Translates to: LSPSLSLSHEGF*SPVRSLHFFLS
Trigger: AGAAAGGAAGAAGTGAAGGGAACGGACCGGAGAGCAAAAGCCCTCGTGAGAAAGGGAAAGAGAAGGGGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000329734.4
CDS CAA 90 bp AACCTCGGGGTTTCTTACCGCCTGGGCACGGGCTGGAAAGCTGTCTaGAGTAACTTTTTCTCCACTTCCAAGGCACTACAGCGATCTAAG +
Preference number: 6 (lower is better)
Translates to: NLGVSYRLGTGWKAV*SNFFSTSKALQRSK
Trigger: CTTAGATCGCTGTAGTGCCTTGGAAGTGGAGAAAAAGTTACTCAAGACAGCTTTCCAGCCCGTGCCCAGGCGGTAAGAAACCCCGAGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000558180.2
CDS CAA 72 bp GTTTCTTACCGCCTGGGCACGGGCTGGAAAGCTGTCTaGAGTAACTTTTTCTCCACTTCCAAGGCACTACAG +
Preference number: 6 (lower is better)
Translates to: VSYRLGTGWKAV*SNFFSTSKALQ
Trigger: CTGTAGTGCCTTGGAAGTGGAGAAAAAGTTACTCAAGACAGCTTTCCAGCCCGTGCCCAGGCGGTAAGAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000558180.2