RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IRF2BP2 (Homo sapiens)

Ensembl gene IDs: ENSG00000168264

Ensembl transcript IDs: ENST00000366609.4, ENST00000366610.7, ENST00000491430.1

Found 320 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATGTTTCAGGGTAAACTGGTGGTATTTCCCAGTGGCATGCCCACTTaGCAACATGCCCGTTCGATCATTTCCTTTCCTTCTCCACCACTT +
Preference number: 1 (lower is better)
Translates to: MFQGKLVVFPSGMPT*QHARSIISFPSPPL
Trigger: AAGTGGTGGAGAAGGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCAGTTTACCCTGAAACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR GCA 90 bp TCATATTCTTCCCCCATTAAACACCAGTACAGAGAAACCACAGGTTaGCCTTTCCACAGCTGGATAGACTTATCCAAAACGGCAGGATGG +
Preference number: 1 (lower is better)
Translates to: SYSSPIKHQYRETTG*PFHSWIDLSKTAGW
Trigger: CCATCCTGCCGTTTTGGATAAGTCTATCCAGCTGTGGAAAGGGCAACCTGTGGTTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR CCA 90 bp ATTAAACACCAGTACAGAGAAACCACAGGTTGCCCTTTCCACAGCTaGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTT +
Preference number: 1 (lower is better)
Translates to: IKHQYRETTGCPFHS*IDLSKTAGWFCINL
Trigger: AAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCTGTGGAAAGGGCAACCTGTGGTTTCTCTGTACTGGTGTTTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR CCA 90 bp GGTTGCCCTTTCCACAGCTGGATAGACTTATCCAAAACGGCAGGATaGTTCTGTATTAATCTTTTTGGAAAGCATGTCTGTATTAAGATT +
Preference number: 1 (lower is better)
Translates to: GCPFHSWIDLSKTAG*FCINLFGKHVCIKI
Trigger: AATCTTAATACAGACATGCTTTCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCTGTGGAAAGGGCAACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGCCCAAGGGCAGTCCTaGCAGCACCACGCGGCTGTT +
Preference number: 2 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDAQGQS*QHHAAV
Trigger: AACAGCCGCGTGGTGCTGCCAGGACTGCCCTTGGGC...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR TCA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTGAGACCAGTCTGCACTaGGTCATATATACTCCAACT +
Preference number: 2 (lower is better)
Translates to: QINTFQLRAVHKGHPKASETSLH*VIYTPT
Trigger: AGTTGGAGTATATATGACTCAGTGCAGACTGGTCTC...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR TCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAACATTTGGGCTGTCACTaGTATGCCCAAGGGCAGTCC +
Preference number: 2 (lower is better)
Translates to: KECQKTQINTFQLRAVHKHLGCH*YAQGQS
Trigger: GGACTGCCCTTGGGCATATCAGTGACAGCCCAAATG...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR GCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAAAGATGAAGTGGCGCTaGAGAGCTGGGCTCTGCTCA +
Preference number: 2 (lower is better)
Translates to: KECQKTQINTFQLRAVHKKMKWR*RAGLCS
Trigger: TGAGCAGAGCCCAGCTCTGCAGCGCCACTTCATCTT...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR GCA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTGCATTTCTGCATGTGTaGATTCACATAAGAGAGACC +
Preference number: 2 (lower is better)
Translates to: QINTFQLRAVHKGHPKASAFLHV*IHIRET
Trigger: GGTCTCTCTTATGTGAATGCACACATGCAGAAATGC...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTGCCCAAGGGCAGTCCTaGCAGCACCACGCGGCTGTT +
Preference number: 2 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCAQGQS*QHHAAV
Trigger: AACAGCCGCGTGGTGCTGCCAGGACTGCCCTTGGGC...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR TCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATAGTGGCATGCCCACTTaGCAACATGCCCGTTCGATC +
Preference number: 2 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDSGMPT*QHARSI
Trigger: GATCGAACGGGCATGTTGTCAAGTGGGCATGCCACT...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR TCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTCATTTGGGCTGTCACTaGTATGCCCAAGGGCAGTCC +
Preference number: 2 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTHLGCH*YAQGQS
Trigger: GGACTGCCCTTGGGCATATCAGTGACAGCCCAAATG...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR TCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGAGTGGCATGCCCACTTaGCAACATGCCCGTTCGATC +
Preference number: 2 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKSGMPT*QHARSI
Trigger: GATCGAACGGGCATGTTGTCAAGTGGGCATGCCACT...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CCA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTAGTAAGTGTAACAACTaGTTAATCATGCAAGTCTGT +
Preference number: 2 (lower is better)
Translates to: QINTFQLRAVHKGHPKASSKCNN*LIMQVC
Trigger: ACAGACTTGCATGATTAACCAGTTGTTACACTTACT...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR GCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTAAGATGAAGTGGCGCTaGAGAGCTGGGCTCTGCTCA +
Preference number: 2 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCKMKWR*RAGLCS
Trigger: TGAGCAGAGCCCAGCTCTGCAGCGCCACTTCATCTT...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGGGTGGTATTTCCCAGTaGCATGCCCACTTGACAACA +
Preference number: 2 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKGGISQ*HAHLTT
Trigger: TGTTGTCAAGTGGGCATGCCACTGGGAAATACCACC...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTTTTAAAAAGATGAAGTaGCGCTGCAGAGCTGGGCTC +
Preference number: 2 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTFKKMK*RCRAGL
Trigger: GAGCCCAGCTCTGCAGCGCCACTTCATCTTTTTAAA...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR CAA 90 bp TTCCCAGCAGCACTCTCAGTCATCAGTATCTCAGGAACTGAACTTTaGAGCAAAATAGAGATTCAAAATCCACTTTCCTACTCCTCTGAG +
Preference number: 2 (lower is better)
Translates to: FPAALSVISISGTEL*SKIEIQNPLSYSSE
Trigger: CTCAGAGGAGTAGGAAAGTGGATTTTGAATCTCTATTTTGCTCAAAAGTTCAGTTCCTGAGATACTGATGACTGAGAGTGCTGCTGGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR TCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAATAGAAGCTAGGCTGTaGACCATACACATAAATTGT +
Preference number: 2 (lower is better)
Translates to: KECQKTQINTFQLRAVHKIEARL*TIHINC
Trigger: ACAATTTATGTGTATGGTTCACAGCCTAGCTTCTAT...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR GCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAGCCCACTTGACAACATaGCCGTTCGATCATTTCCTT +
Preference number: 2 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKAHLTT*PFDHFL
Trigger: AAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGC...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAATTCAGGGTAAACTGGTaGTATTTCCCAGTGGCATGC +
Preference number: 2 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKFRVNW*YFPVAC
Trigger: GCATGCCACTGGGAAATACCACCAGTTTACCCTGAA...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGATTCAGGGTAAACTGGTaGTATTTCCCAGTGGCATGC +
Preference number: 2 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGFRVNW*YFPVAC
Trigger: GCATGCCACTGGGAAATACCACCAGTTTACCCTGAA...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR TCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGAACTTTCCTACTCCTCTaGGGACAATGTTTCAGGGTA +
Preference number: 2 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGTFLLL*GQCFRV
Trigger: TACCCTGAAACATTGTCCTCAGAGGAGTAGGAAAGT...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR TCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGAGAGACCAGTCTGCACTaGGTCATATATACTCCAACT +
Preference number: 2 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGETSLH*VIYTPT
Trigger: AGTTGGAGTATATATGACTCAGTGCAGACTGGTCTC...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAATTAAGGGTAATCATTaGGTTTTTCTGAAACCGGAA +
Preference number: 2 (lower is better)
Translates to: KECQKTQINTFQLRAVHKIKGNH*VFLKPE
Trigger: TTCCGGTTTCAGAAAAACCCAATGATTACCCTTAAT...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTTGTTTCAGGGTAAACTaGTGGTATTTCCCAGTGGCA +
Preference number: 2 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCCFRVN*WYFPVA
Trigger: TGCCACTGGGAAATACCACCAGTTTACCCTGAAACA...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAATGTTTCAGGGTAAACTaGTGGTATTTCCCAGTGGCA +
Preference number: 2 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKCFRVN*WYFPVA
Trigger: TGCCACTGGGAAATACCACCAGTTTACCCTGAAACA...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAATTACAACTGATCACGTaGACAGTGAACAGCGGTCAA +
Preference number: 2 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKLQLIT*TVNSGQ
Trigger: TTGACCGCTGTTCACTGTCCACGTGATCAGTTGTAA...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGATTACAACTGATCACGTaGACAGTGAACAGCGGTCAA +
Preference number: 2 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGLQLIT*TVNSGQ
Trigger: TTGACCGCTGTTCACTGTCCACGTGATCAGTTGTAA...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR TCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTATACAGCCATGTTTATaGAGTCTACATTTCCCTTGT +
Preference number: 2 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTIQPCL*SLHFPC
Trigger: ACAAGGGAAATGTAGACTTCATAAACATGGCTGTAT...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR GCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGAGCATTTCTGCATGTGTaGATTCACATAAGAGAGACC +
Preference number: 2 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGAFLHV*IHIRET
Trigger: GGTCTCTCTTATGTGAATGCACACATGCAGAAATGC...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR TCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATACAGCCATGTTTATaGAGTCTACATTTCCCTTGT +
Preference number: 2 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKIQPCL*SLHFPC
Trigger: ACAAGGGAAATGTAGACTTCATAAACATGGCTGTAT...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTATTAAGGGTAATCATTaGGTTTTTCTGAAACCGGAA +
Preference number: 2 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTIKGNH*VFLKPE
Trigger: TTCCGGTTTCAGAAAAACCCAATGATTACCCTTAAT...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTTCCAAAACGGCAGGATaGTTCTGTATTAATCTTTTT +
Preference number: 2 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTSKTAG*FCINLF
Trigger: AAAAAGATTAATACAGAACCATCCTGCCGTTTTGGA...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR TCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTCAGTATCTCAGGAACTaGACTTTTGAGCAAAATAGA +
Preference number: 2 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCQYLRN*TFEQNR
Trigger: TCTATTTTGCTCAAAAGTTCAGTTCCTGAGATACTG...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR GCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGGGTCAAATTCCAAAGTaGCTAGATACACATTTATAC +
Preference number: 2 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKGQIPK*LDTHLY
Trigger: GTATAAATGTGTATCTAGGCACTTTGGAATTTGACC...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CAA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATCAGTGGCATGCCCACTaGACAACATGCCCGTTCGAT +
Preference number: 3 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDQWHAH*TTCPFD
Trigger: ATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTG...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR TCA 72 bp GGTAAACTGGTGGTATTTCCCAGTGGCATGCCCACTTaGCAACATGCCCGTTCGATCATTTCCTTTCCTTCT +
Preference number: 3 (lower is better)
Translates to: GKLVVFPSGMPT*QHARSIISFPS
Trigger: AGAAGGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCAGTTTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CAA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTGGAAAAACACTGTATTaGGTGCAGTATCTGATTTTC +
Preference number: 3 (lower is better)
Translates to: QINTFQLRAVHKGHPKASGKTLY*VQYLIF
Trigger: GAAAATCAGATACTGCACCAAATACAGTGTTTTTCC...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR GCA 72 bp TCCCCCATTAAACACCAGTACAGAGAAACCACAGGTTaGCCTTTCCACAGCTGGATAGACTTATCCAAAACG +
Preference number: 3 (lower is better)
Translates to: SPIKHQYRETTG*PFHSWIDLSKT
Trigger: CGTTTTGGATAAGTCTATCCAGCTGTGGAAAGGGCAACCTGTGGTTTCTCTGTACTGGTGTTTAATGGGGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR-3UTR CAA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTCAGTGGCATGCCCACTaGACAACATGCCCGTTCGAT +
Preference number: 3 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCQWHAH*TTCPFD
Trigger: ATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTG...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR CCA 72 bp TTCCACAGCTGGATAGACTTATCCAAAACGGCAGGATaGTTCTGTATTAATCTTTTTGGAAAGCATGTCTGT +
Preference number: 3 (lower is better)
Translates to: FHSWIDLSKTAG*FCINLFGKHVC
Trigger: ACAGACATGCTTTCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCTGTGGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR TCA 72 bp CAAAATAGAGATTCAAAATCCACTTTCCTACTCCTCTaGGGACAATGTTTCAGGGTAAACTGGTGGTATTTC +
Preference number: 3 (lower is better)
Translates to: QNRDSKSTFLLL*GQCFRVNWWYF
Trigger: GAAATACCACCAGTTTACCCTGAAACATTGTCCTCAGAGGAGTAGGAAAGTGGATTTTGAATCTCTATTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTCTGCCGGGCGGCTGCTaGCGAAGTCAGAGCCGAGGC +
Preference number: 4 (lower is better)
Translates to: QINTFQLRAVHKGHPKASLPGGC*RSQSRG
Trigger: GCCTCGGCTCTGACTTCGGCAGCAGCCGCCCGGCAG...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTTCGAAGGGCCCCGAGTaGCCGTGCTGGTGCAGCGCC +
Preference number: 4 (lower is better)
Translates to: QINTFQLRAVHKGHPKASSKGPE*PCWCSA
Trigger: GGCGCTGCACCAGCACGGCCACTCGGGGCCCTTCGA...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCTGGGCCAGGCTCGCTaGCGGGCGGCTGCTGCCGAA +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFLGQAR*RAAAAE
Trigger: TTCGGCAGCAGCCGCCCGGCAGCGAGCCTGGCCCAG...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp ATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCTTTCCGCTCCACGGCAGCGCTaGTCGACACGGATGCCGGCC +
Preference number: 4 (lower is better)
Translates to: ISQWHAHLTTCPFDHFLSAPRQR*STRMPA
Trigger: GGCCGGCATCCGTGTCGAGCAGCGCTGCCGTGGAGC...GGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTGCTGCCGCCTCACGCTaGTCGTGCTCCACGGCAGCG +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFAAASR*SCSTAA
Trigger: CGCTGCCGTGGAGCACGAGCAGCGTGAGGCGGCAGC...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTGATGCCGGCCGCTTGTaGGCGCCCAGATCGGTGGGC +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFDAGRL*APRSVG
Trigger: GCCCACCGATCTGGGCGCCCACAAGCGGCCGGCATC...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp ATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCTTTCCCCCGAGTGGCCGTGCTaGTGCAGCGCCAGCAGCGTG +
Preference number: 4 (lower is better)
Translates to: ISQWHAHLTTCPFDHFLSPEWPC*CSASSV
Trigger: CACGCTGCTGGCGCTGCACCAGCACGGCCACTCGGG...GGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTGCCTCACGCTGCTCGTaGTCCACGGCAGCGCTGCTC +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFASRCS*STAALL
Trigger: GAGCAGCGCTGCCGTGGAGCACGAGCAGCGTGAGGC...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp ATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCTTTCCGCTCGTGGCAGAGGGTaGAGCACAGCGGGGCACTGG +
Preference number: 4 (lower is better)
Translates to: ISQWHAHLTTCPFDHFLSARGRG*STAGHW
Trigger: CCAGTGCCCCGCTGTGCTGCACCCTCTGCCACGAGC...GGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTGCTGGCAGGGTGCACTaGCTCCAGTCCTCCTGTGTT +
Preference number: 4 (lower is better)
Translates to: QINTFQLRAVHKGHPKASAGRVH*LQSSCV
Trigger: AACACAGGAGGACTGGAGCCAGTGCACCCTGCCAGC...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTGGGCACTGCACAAAATaGGTGTCCTCCAGCCGCTCG +
Preference number: 4 (lower is better)
Translates to: QINTFQLRAVHKGHPKASGHCTK*VSSSRS
Trigger: CGAGCGGCTGGAGGACACCCATTTTGTGCAGTGCCC...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCAGCGGGGCACTGGTTaGCAGAGAGGAGTCCGGGAG +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFQRGTG*QRGVRE
Trigger: CTCCCGGACTCCTCTCTGGCAACCAGTGCCCCGCTG...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp ATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCTTTCCTCCTCCAGCCGCTCGTaGCAGAGGGTGCAGCACAGC +
Preference number: 4 (lower is better)
Translates to: ISQWHAHLTTCPFDHFLSSSSRS*QRVQHS
Trigger: GCTGTGCTGCACCCTCTGCCACGAGCGGCTGGAGGA...GGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTTCCTCCAGCCGCTCGTaGCAGAGGGTGCAGCACAGC +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFSSSRS*QRVQHS
Trigger: GCTGTGCTGCACCCTCTGCCACGAGCGGCTGGAGGA...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTGCCCAAGGGCAGTCCTaGCAGCACCACGCGGCTGTT +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFAQGQS*QHHAAV
Trigger: AACAGCCGCGTGGTGCTGCCAGGACTGCCCTTGGGC...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAACAGACCCGCGGCTCTTaGCCGCACCTTCCGCGCTCA +
Preference number: 4 (lower is better)
Translates to: KECQKTQINTFQLRAVHKQTRGS*PHLPRS
Trigger: TGAGCGCGGAAGGTGCGGGCAAGAGCCGCGGGTCTG...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTGGCCCCGAGTGGCCGTaGTGGTGCAGCGCCAGCAGC +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTGPEWP*WCSASS
Trigger: GCTGCTGGCGCTGCACCAGCACGGCCACTCGGGGCC...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTAAGATGAAGTGGCGCTaGAGAGCTGGGCTCTGCTCA +
Preference number: 4 (lower is better)
Translates to: QINTFQLRAVHKGHPKASKMKWR*RAGLCS
Trigger: TGAGCAGAGCCCAGCTCTGCAGCGCCACTTCATCTT...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATCGCGAGGTGAGGGGCTaGAGCCGCGGCAGCAGTTCC +
Preference number: 4 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDREVRG*SRGSSS
Trigger: GGAACTGCTGCCGCGGCTGCAGCCCCTCACCTCGCG...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000366609.4
CDS-3UTR CCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTGCCTCGGGGCCGCCGTaGCCAAGCTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTASGPP*PSCCCC
Trigger: GCAGCAGCAGCAGCTTGGCCACGGCGGCCCCGAGGC...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATCGCGGGTTCGGGCTCTaGCGATTCAGCTCGGGCGGC +
Preference number: 4 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDRGFGL*RFSSGG
Trigger: GCCGCCCGAGCTGAATCGCCAGAGCCCGAACCCGCG...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATCCCGAGTGGCCGTGCTaGTGCAGCGCCAGCAGCGTG +
Preference number: 4 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDPEWPC*CSASSV
Trigger: CACGCTGCTGGCGCTGCACCAGCACGGCCACTCGGG...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTAATGAGGTGAGGCAGTaGGTGGTGGCGGAGACACAA +
Preference number: 4 (lower is better)
Translates to: QINTFQLRAVHKGHPKASNEVRQ*VVAETQ
Trigger: TTGTGTCTCCGCCACCACCCACTGCCTCACCTCATT...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTGCCGCGCCGTCTCGATaGCGAACTCGACGCGGTCGG +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTAAPSR*RTRRGR
Trigger: CCGACCGCGTCGAGTTCGTCATCGAGACGGCGCGGC...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTTGGCCGAGCCGTTCATaGGCGGCACCAGGGTGGGCG +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTWPSRS*AAPGWA
Trigger: CGCCCACCCTGGTGCCGCTCATGAACGGCTCGGCCA...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp ATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCTTTCCACCCAACAACCTGCCTaGAGTCAGGGCCGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: ISQWHAHLTTCPFDHFLSTQQPA*SQGRLL
Trigger: AAGGAGCCGGCCCTGACTGCAGGCAGGTTGTTGGGT...GGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000366609.4
CDS-3UTR CCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGGCCTCGGGGCCGCCGTaGCCAAGCTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKASGPP*PSCCCC
Trigger: GCAGCAGCAGCAGCTTGGCCACGGCGGCCCCGAGGC...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTGCGGCTCCTCTAGCTTaGAGAAGCCGTTGGGCACCA +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFAAPLA*RSRWAP
Trigger: TGGTGCCCAACGGCTTCTCCAAGCTAGAGGAGCCGC...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTTCGAAGGGCCCCGAGTaGCCGTGCTGGTGCAGCGCC +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTSKGPE*PCWCSA
Trigger: GGCGCTGCACCAGCACGGCCACTCGGGGCCCTTCGA...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGGGACTGGCCATTCTaGGCCGCTTCAGGCGGTGTG +
Preference number: 4 (lower is better)
Translates to: KECQKTQINTFQLRAVHKGDWPF*AASGGV
Trigger: CACACCGCCTGAAGCGGCCCAGAATGGCCAGTCCCC...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGCCCAAGGGCAGTCCTaGCAGCACCACGCGGCTGTT +
Preference number: 4 (lower is better)
Translates to: KECQKTQINTFQLRAVHKAQGQS*QHHAAV
Trigger: AACAGCCGCGTGGTGCTGCCAGGACTGCCCTTGGGC...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTGAGTCATGGGGATCTTaGGCCCCTCTGTGGATGTGG +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFESWGS*APLWMW
Trigger: CCACATCCACAGAGGGGCTCAAGATCCCCATGACTC...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp ATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCTTTCCGAGTCATGGGGATCTTaGGCCCCTCTGTGGATGTGG +
Preference number: 4 (lower is better)
Translates to: ISQWHAHLTTCPFDHFLSESWGS*APLWMW
Trigger: CCACATCCACAGAGGGGCTCAAGATCCCCATGACTC...GGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAACCGCCGTGGCCAAGCTaGTGCTGCTGCTGCAAAAGG +
Preference number: 4 (lower is better)
Translates to: KECQKTQINTFQLRAVHKPPWPS*CCCCKR
Trigger: CCTTTTGCAGCAGCAGCAGCAGCTTGGCCACGGCGG...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTTCGCTGCCGGGCGGCTaGTGCCGAAGTCAGAGCCGA +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTSLPGG*CRSQSR
Trigger: TCGGCTCTGACTTCGGCAGCAGCCGCCCGGCAGCGA...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAACTGGGCCAGGCTCGCTaGCGGGCGGCTGCTGCCGAA +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKLGQAR*RAAAAE
Trigger: TTCGGCAGCAGCCGCCCGGCAGCGAGCCTGGCCCAG...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTCGTTGGGCACCAGGATaGCGTTCACGGGCGGCGGCT +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTRWAPG*RSRAAA
Trigger: AGCCGCCGCCCGTGAACGGCATCCTGGTGCCCAACG...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGGCTGCTCGACACGGATaGCGGCCGCTTGTGGGCGCC +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKAARHG*RPLVGA
Trigger: GGCGCCCACAAGCGGCCGGCATCCGTGTCGAGCAGC...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTCAGACCCGCGGCTCTTaGCCGCACCTTCCGCGCTCA +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTQTRGS*PHLPRS
Trigger: TGAGCGCGGAAGGTGCGGGCAAGAGCCGCGGGTCTG...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAACTGTTGACCCAGTCCTaGTCTCCAGACCCGCGGCTC +
Preference number: 4 (lower is better)
Translates to: KECQKTQINTFQLRAVHKLLTQS*SPDPRL
Trigger: GAGCCGCGGGTCTGGAGAGCAGGACTGGGTCAACAG...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTGAGTGGCCGTGCTGGTaGAGCGCCAGCAGCGTGTCG +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTEWPCW*SASSVS
Trigger: CGACACGCTGCTGGCGCTGCACCAGCACGGCCACTC...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGAGGCCCCGAGTGGCCGTaGTGGTGCAGCGCCAGCAGC +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGGPEWP*WCSASS
Trigger: GCTGCTGGCGCTGCACCAGCACGGCCACTCGGGGCC...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGCGTCGCTGCTGCTGCTaGCGCCGCGACCGCTCCACT +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKRRCCC*RRDRST
Trigger: AGTGGAGCGGTCGCGGCGGCAGCAGCAGCAGCGACG...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000366609.4
CDS-3UTR CCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGCGCGGGTTCGGGCTCTaGCGATTCAGCTCGGGCGGC +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKRGFGL*RFSSGG
Trigger: GCCGCCCGAGCTGAATCGCCAGAGCCCGAACCCGCG...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGCCCCTCTGTGGATGTaGACAGCCACGGCTGGGCCT +
Preference number: 4 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDAPLWM*TATAGP
Trigger: AGGCCCAGCCGTGGCTGTCCACATCCACAGAGGGGC...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTGCCGCGCCGTCTCGATaGCGAACTCGACGCGGTCGG +
Preference number: 4 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCAAPSR*RTRRGR
Trigger: CCGACCGCGTCGAGTTCGTCATCGAGACGGCGCGGC...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGATGGCCGAGCCGTTCATaGGCGGCACCAGGGTGGGCG +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGWPSRS*AAPGWA
Trigger: CGCCCACCCTGGTGCCGCTCATGAACGGCTCGGCCA...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp ATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCTTTCCCATTTGGGCTGTCACTaGTATGCCCAAGGGCAGTCC +
Preference number: 4 (lower is better)
Translates to: ISQWHAHLTTCPFDHFLSHLGCH*YAQGQS
Trigger: GGACTGCCCTTGGGCATATCAGTGACAGCCCAAATG...GGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGACTGCCGGGCGGCTGCTaGCGAAGTCAGAGCCGAGGC +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGLPGGC*RSQSRG
Trigger: GCCTCGGCTCTGACTTCGGCAGCAGCCGCCCGGCAG...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGTCGCTGCCGGGCGGCTaGTGCCGAAGTCAGAGCCGA +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKSLPGG*CRSQSR
Trigger: TCGGCTCTGACTTCGGCAGCAGCCGCCCGGCAGCGA...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGAGCTGCTCGACACGGATaGCGGCCGCTTGTGGGCGCC +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGAARHG*RPLVGA
Trigger: GGCGCCCACAAGCGGCCGGCATCCGTGTCGAGCAGC...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTGCTCCACGGCAGCGCTaGTCGACACGGATGCCGGCC +
Preference number: 4 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCAPRQR*STRMPA
Trigger: GGCCGGCATCCGTGTCGAGCAGCGCTGCCGTGGAGC...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGAGCTGCCGCCTCACGCTaGTCGTGCTCCACGGCAGCG +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGAAASR*SCSTAA
Trigger: CGCTGCCGTGGAGCACGAGCAGCGTGAGGCGGCAGC...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTGGGAGGCTGGCAGGGTaGACTGGCTCCAGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTGRLAG*TGSSPP
Trigger: AGGAGGACTGGAGCCAGTGCACCCTGCCAGCCTCCC...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTTCTCCACTAGCTCCCTaGTGTTTGATGCTTTGTCTG +
Preference number: 4 (lower is better)
Translates to: QINTFQLRAVHKGHPKASSPLAP*CLMLCL
Trigger: CAGACAAAGCATCAAACAGCAGGGAGCTAGTGGAGA...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTGATGCCGGCCGCTTGTaGGCGCCCAGATCGGTGGGC +
Preference number: 4 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCDAGRL*APRSVG
Trigger: GCCCACCGATCTGGGCGCCCACAAGCGGCCGGCATC...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCCGACTTCACCTTCTaGTTCTGGAGAGGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFPDFTF*FWRGLP
Trigger: AGGAAGCCCTCTCCAGAACCAGAAGGTGAAGTCGGG...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGCTGCCATGGGGGACTaGCCATTCTGGGCCGCTTCA +
Preference number: 4 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDAAMGD*PFWAAS
Trigger: TGAAGCGGCCCAGAATGGCCAGTCCCCCATGGCAGC...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTAGGAGTCCGGGAGGCTaGCAGGGTGCACTGGCTCCA +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTRSPGG*QGALAP
Trigger: TGGAGCCAGTGCACCCTGCCAGCCTCCCGGACTCCT...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTTTTAAAAAGATGAAGTaGCGCTGCAGAGCTGGGCTC +
Preference number: 4 (lower is better)
Translates to: QINTFQLRAVHKGHPKASFKKMK*RCRAGL
Trigger: GAGCCCAGCTCTGCAGCGCCACTTCATCTTTTTAAA...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAACGTTGGGCACCAGGATaGCGTTCACGGGCGGCGGCT +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKRWAPG*RSRAAA
Trigger: AGCCGCCGCCCGTGAACGGCATCCTGGTGCCCAACG...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTGCCTCACGCTGCTCGTaGTCCACGGCAGCGCTGCTC +
Preference number: 4 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCASRCS*STAALL
Trigger: GAGCAGCGCTGCCGTGGAGCACGAGCAGCGTGAGGC...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGAGAGTGGCCGTGCTGGTaGAGCGCCAGCAGCGTGTCG +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGEWPCW*SASSVS
Trigger: CGACACGCTGCTGGCGCTGCACCAGCACGGCCACTC...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAGCTCGTGGCAGAGGGTaGAGCACAGCGGGGCACTGG +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKARGRG*STAGHW
Trigger: CCAGTGCCCCGCTGTGCTGCACCCTCTGCCACGAGC...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGCGGTTGTTTCTCCTTaGCTGCCGCCTCACGCTGCT +
Preference number: 4 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDAVVSP*LPPHAA
Trigger: AGCAGCGTGAGGCGGCAGCCAAGGAGAAACAACCGC...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGGCCCCTCTGTGGATGTaGACAGCCACGGCTGGGCCT +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKAPLWM*TATAGP
Trigger: AGGCCCAGCCGTGGCTGTCCACATCCACAGAGGGGC...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGGGGGACTGGCCATTCTaGGCCGCTTCAGGCGGTGTG +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKGDWPF*AASGGV
Trigger: CACACCGCCTGAAGCGGCCCAGAATGGCCAGTCCCC...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGCTGGCAGGGTGCACTaGCTCCAGTCCTCCTGTGTT +
Preference number: 4 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDAGRVH*LQSSCV
Trigger: AACACAGGAGGACTGGAGCCAGTGCACCCTGCCAGC...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGAGGAGTCCGGGAGGCTaGCAGGGTGCACTGGCTCCA +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKRSPGG*QGALAP
Trigger: TGGAGCCAGTGCACCCTGCCAGCCTCCCGGACTCCT...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAAGTGGCATGCCCACTTaGCAACATGCCCGTTCGATC +
Preference number: 4 (lower is better)
Translates to: KECQKTQINTFQLRAVHKSGMPT*QHARSI
Trigger: GATCGAACGGGCATGTTGTCAAGTGGGCATGCCACT...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTGGGTGTTTAAAAAGATaGAGTGGCGCTGCAGAGCTG +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFGCLKR*SGAAEL
Trigger: CAGCTCTGCAGCGCCACTTCATCTTTTTAAACACCC...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAATGGCCAAGCTGCTGCTaGTGCTGCAAAAGGATGTCC +
Preference number: 4 (lower is better)
Translates to: KECQKTQINTFQLRAVHKWPSCC*CCKRMS
Trigger: GGACATCCTTTTGCAGCAGCAGCAGCAGCTTGGCCA...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATCCGTGGCCAAGCTGCTaGTGCTGCTGCAAAAGGATG +
Preference number: 4 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDPWPSC*CCCKRM
Trigger: CATCCTTTTGCAGCAGCAGCAGCAGCTTGGCCACGG...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp ATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCTTTCCCTTTTGAGGCATGACTaGCCCCTGCATTGTCTGCTA +
Preference number: 4 (lower is better)
Translates to: ISQWHAHLTTCPFDHFLSLLRHD*PLHCLL
Trigger: TAGCAGACAATGCAGGGGGCAGTCATGCCTCAAAAG...GGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCTTTTGAGGCATGACTaGCCCCTGCATTGTCTGCTA +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFLLRHD*PLHCLL
Trigger: TAGCAGACAATGCAGGGGGCAGTCATGCCTCAAAAG...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTGGGAGGCTGGCAGGGTaGACTGGCTCCAGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCGRLAG*TGSSPP
Trigger: AGGAGGACTGGAGCCAGTGCACCCTGCCAGCCTCCC...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTCAGCGGGGCACTGGTTaGCAGAGAGGAGTCCGGGAG +
Preference number: 4 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCQRGTG*QRGVRE
Trigger: CTCCCGGACTCCTCTCTGGCAACCAGTGCCCCGCTG...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTGGGAAGCAGAACTTGTaGGAAGGGACGGACGGGCAC +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTGKQNL*EGTDGH
Trigger: GTGCCCGTCCGTCCCTTCGCACAAGTTCTGCTTCCC...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGGCTGCCATGGGGGACTaGCCATTCTGGGCCGCTTCA +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKAAMGD*PFWAAS
Trigger: TGAAGCGGCCCAGAATGGCCAGTCCCCCATGGCAGC...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTACCCGTTGGCCCCGTTaGCCTCGAAACCCAACAACC +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTTRWPR*PRNPTT
Trigger: GGTTGTTGGGTTTCGAGGCCAACGGGGCCAACGGGT...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000366609.4
CDS-3UTR TCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGACGGTCTTGGGCCTGTTaGCCCAGTCCTGCTCTCCAG +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGRSWAC*PSPALQ
Trigger: CTGGAGAGCAGGACTGGGTCAACAGGCCCAAGACCG...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGGTGGTCCGGTTGGAATaGGGTGAGGCAGTGGGTGGT +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKVVRLE*GEAVGG
Trigger: ACCACCCACTGCCTCACCTCATTCCAACCGGACCAC...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTAAATGTGAGGCCACATaGAAGACAGTACATCTGTTA +
Preference number: 4 (lower is better)
Translates to: QINTFQLRAVHKGHPKASKCEAT*KTVHLL
Trigger: TAACAGATGTACTGTCTTTCATGTGGCCTCACATTT...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAACCGCCGTGGCCAAGCTaGTGCTGCTGCTGCAAAAGG +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKPPWPS*CCCCKR
Trigger: CCTTTTGCAGCAGCAGCAGCAGCTTGGCCACGGCGG...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGACTGTTGACCCAGTCCTaGTCTCCAGACCCGCGGCTC +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGLLTQS*SPDPRL
Trigger: GAGCCGCGGGTCTGGAGAGCAGGACTGGGTCAACAG...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp ATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCTTTCCGGGCTTCCTTTTCCTTaGTGTTCTTGCAACTGCAGT +
Preference number: 4 (lower is better)
Translates to: ISQWHAHLTTCPFDHFLSGLPFP*CSCNCS
Trigger: ACTGCAGTTGCAAGAACAGCAAGGAAAAGGAAGCCC...GGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000366610.7
CDS-3UTR GCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTGCTGTGGAGAATCTCTaGACTGTCATCAGGTACAAC +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFAVENL*TVIRYN
Trigger: GTTGTACCTGATGACAGTGCAGAGATTCTCCACAGC...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAGCAAAAGGATGTCCTTaGCGGAGAGCGGCGGCGGCT +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKAKGCP*RRAAAA
Trigger: AGCCGCCGCCGCTCTCCGCCAAGGACATCCTTTTGC...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTGCAAAAGGATGTCCTTaGCGGAGAGCGGCGGCGGCT +
Preference number: 4 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCAKGCP*RRAAAA
Trigger: AGCCGCCGCCGCTCTCCGCCAAGGACATCCTTTTGC...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTGCTTGGAGAAGCCGTTaGGCACCAGGATGCCGTTCA +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTAWRSR*APGCRS
Trigger: TGAACGGCATCCTGGTGCCCAACGGCTTCTCCAAGC...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGGGCCCAGCCTTCTTTaGTTCATAGAGGACGGAGAG +
Preference number: 4 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDGPSLL*FIEDGE
Trigger: CTCTCCGTCCTCTATGAACCAAAGAAGGCTGGGCCC...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAAGCACAGCGGGGCACTaGTTGCCAGAGAGGAGTCCG +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKSTAGH*LPERSP
Trigger: CGGACTCCTCTCTGGCAACCAGTGCCCCGCTGTGCT...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTAGGCCCAGGGGACATTaGAGCCCACAAGAGGGCATT +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTRPRGH*SPQEGI
Trigger: AATGCCCTCTTGTGGGCTCCAATGTCCCCTGGGCCT...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAGTGGTCCGGTTGGAATaGGGTGAGGCAGTGGGTGGT +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKVVRLE*GEAVGG
Trigger: ACCACCCACTGCCTCACCTCATTCCAACCGGACCAC...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGCTGGTTGGCATCTTTTaGGGCATGACTGCCCCCTGC +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKLVGIF*GMTAPC
Trigger: GCAGGGGGCAGTCATGCCTCAAAAGATGCCAACCAG...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTACTTTCCTACTCCTCTaGGGACAATGTTTCAGGGTA +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFTFLLL*GQCFRV
Trigger: TACCCTGAAACATTGTCCTCAGAGGAGTAGGAAAGT...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTCAGTATCTCAGGAACTaGACTTTTGAGCAAAATAGA +
Preference number: 4 (lower is better)
Translates to: QINTFQLRAVHKGHPKASQYLRN*TFEQNR
Trigger: TCTATTTTGCTCAAAAGTTCAGTTCCTGAGATACTG...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp ATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCTTTCCGAGACCAGTCTGCACTaGGTCATATATACTCCAACT +
Preference number: 4 (lower is better)
Translates to: ISQWHAHLTTCPFDHFLSETSLH*VIYTPT
Trigger: AGTTGGAGTATATATGACTCAGTGCAGACTGGTCTC...GGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGTTGTTTCTCCTTGGCTaGCGCCTCACGCTGCTCGTG +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKLFLLG*RLTLLV
Trigger: CACGAGCAGCGTGAGGCGGCAGCCAAGGAGAAACAA...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAGGGACGGACGGGCACTaGACAAAATGGGTGTCCTCC +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKGTDGH*TKWVSS
Trigger: GGAGGACACCCATTTTGTGCAGTGCCCGTCCGTCCC...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTGGGACGGACGGGCACTaGACAAAATGGGTGTCCTCC +
Preference number: 4 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCGTDGH*TKWVSS
Trigger: GGAGGACACCCATTTTGTGCAGTGCCCGTCCGTCCC...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGAGGGAAGCAGAACTTGTaGGAAGGGACGGACGGGCAC +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGGKQNL*EGTDGH
Trigger: GTGCCCGTCCGTCCCTTCGCACAAGTTCTGCTTCCC...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTCGAAACCCAACAACCTaGCTGCAGTCAGGGCCGGCT +
Preference number: 4 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCRNPTT*LQSGPA
Trigger: AGCCGGCCCTGACTGCAGGCAGGTTGTTGGGTTTCG...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000366609.4
CDS-3UTR CCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAGCGGCTCCTCTAGCTTaGAGAAGCCGTTGGGCACCA +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKAAPLA*RSRWAP
Trigger: TGGTGCCCAACGGCTTCTCCAAGCTAGAGGAGCCGC...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAGCGGTTGTTTCTCCTTaGCTGCCGCCTCACGCTGCT +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKAVVSP*LPPHAA
Trigger: AGCAGCGTGAGGCGGCAGCCAAGGAGAAACAACCGC...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGGTGGACAGCCACGGCTaGGCCTCTCCGTTGATCTTA +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKVDSHG*ASPLIL
Trigger: TAAGATCAACGGAGAGGCCCAGCCGTGGCTGTCCAC...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGAGCGGTGTGGTCCGGTTaGAATGAGGTGAGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGAVWSG*NEVRQW
Trigger: CCACTGCCTCACCTCATTCCAACCGGACCACACCGC...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTGCGGTGTGGTCCGGTTaGAATGAGGTGAGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCAVWSG*NEVRQW
Trigger: CCACTGCCTCACCTCATTCCAACCGGACCACACCGC...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTGGGCCCAGCCTTCTTTaGTTCATAGAGGACGGAGAG +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTGPSLL*FIEDGE
Trigger: CTCTCCGTCCTCTATGAACCAAAGAAGGCTGGGCCC...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGAGGGCACTGCACAAAATaGGTGTCCTCCAGCCGCTCG +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGGHCTK*VSSSRS
Trigger: CGAGCGGCTGGAGGACACCCATTTTGTGCAGTGCCC...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp ATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCTTTCCTGTTTCAGGGTAAACTaGTGGTATTTCCCAGTGGCA +
Preference number: 4 (lower is better)
Translates to: ISQWHAHLTTCPFDHFLSCFRVN*WYFPVA
Trigger: TGCCACTGGGAAATACCACCAGTTTACCCTGAAACA...GGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTTTACAACTGATCACGTaGACAGTGAACAGCGGTCAA +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFLQLIT*TVNSGQ
Trigger: TTGACCGCTGTTCACTGTCCACGTGATCAGTTGTAA...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAACTGGTTGGCATCTTTTaGGGCATGACTGCCCCCTGC +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKLVGIF*GMTAPC
Trigger: GCAGGGGGCAGTCATGCCTCAAAAGATGCCAACCAG...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGGGTGTTTAAAAAGATaGAGTGGCGCTGCAGAGCTG +
Preference number: 4 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDGCLKR*SGAAEL
Trigger: CAGCTCTGCAGCGCCACTTCATCTTTTTAAACACCC...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGTGGCCAAGCTGCTGCTaGTGCTGCAAAAGGATGTCC +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKWPSCC*CCKRMS
Trigger: GGACATCCTTTTGCAGCAGCAGCAGCAGCTTGGCCA...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGATTGTTTCTCCTTGGCTaGCGCCTCACGCTGCTCGTG +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGLFLLG*RLTLLV
Trigger: CACGAGCAGCGTGAGGCGGCAGCCAAGGAGAAACAA...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTTCCAGCAAGGATGGTTaGAATTTCCCCTTGCATAAA +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFSSKDG*NFPLHK
Trigger: TTTATGCAAGGGGAAATTGCAACCATCCTTGCTGGA...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp ATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCTTTCCTCCAGCAAGGATGGTTaGAATTTCCCCTTGCATAAA +
Preference number: 4 (lower is better)
Translates to: ISQWHAHLTTCPFDHFLSSSKDG*NFPLHK
Trigger: TTTATGCAAGGGGAAATTGCAACCATCCTTGCTGGA...GGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGCCCACTTGACAACATaGCCGTTCGATCATTTCCTT +
Preference number: 4 (lower is better)
Translates to: KECQKTQINTFQLRAVHKAHLTT*PFDHFL
Trigger: AAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGC...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTGCATTTCTGCATGTGTaGATTCACATAAGAGAGACC +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFAFLHV*IHIRET
Trigger: GGTCTCTCTTATGTGAATGCACACATGCAGAAATGC...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGCTGTGGAGAATCTCTaGACTGTCATCAGGTACAAC +
Preference number: 4 (lower is better)
Translates to: KECQKTQINTFQLRAVHKAVENL*TVIRYN
Trigger: GTTGTACCTGATGACAGTGCAGAGATTCTCCACAGC...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAATTCACCTTCTGGTTCTaGAGAGGGCTTCCTTTTCCT +
Preference number: 4 (lower is better)
Translates to: KECQKTQINTFQLRAVHKFTFWF*RGLPFP
Trigger: AGGAAAAGGAAGCCCTCTCCAGAACCAGAAGGTGAA...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTGTGGACAGCCACGGCTaGGCCTCTCCGTTGATCTTA +
Preference number: 4 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCVDSHG*ASPLIL
Trigger: TAAGATCAACGGAGAGGCCCAGCCGTGGCTGTCCAC...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAAGGCCCAGGGGACATTaGAGCCCACAAGAGGGCATT +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKRPRGH*SPQEGI
Trigger: AATGCCCTCTTGTGGGCTCCAATGTCCCCTGGGCCT...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTATTAAGGGTAATCATTaGGTTTTTCTGAAACCGGAA +
Preference number: 4 (lower is better)
Translates to: QINTFQLRAVHKGHPKASIKGNH*VFLKPE
Trigger: TTCCGGTTTCAGAAAAACCCAATGATTACCCTTAAT...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAATTCAGGGTAAACTGGTaGTATTTCCCAGTGGCATGC +
Preference number: 4 (lower is better)
Translates to: KECQKTQINTFQLRAVHKFRVNW*YFPVAC
Trigger: GCATGCCACTGGGAAATACCACCAGTTTACCCTGAA...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGGCATCTTTTGAGGCATaGCTGCCCCCTGCATTGTCT +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKASFEA*LPPALS
Trigger: AGACAATGCAGGGGGCAGTCATGCCTCAAAAGATGC...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAAGTGGCATGCCCACTTaGCAACATGCCCGTTCGATC +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKSGMPT*QHARSI
Trigger: GATCGAACGGGCATGTTGTCAAGTGGGCATGCCACT...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAACATTTGGGCTGTCACTaGTATGCCCAAGGGCAGTCC +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKHLGCH*YAQGQS
Trigger: GGACTGCCCTTGGGCATATCAGTGACAGCCCAAATG...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGAGACCAGTCTGCACTaGGTCATATATACTCCAACT +
Preference number: 4 (lower is better)
Translates to: KECQKTQINTFQLRAVHKETSLH*VIYTPT
Trigger: AGTTGGAGTATATATGACTCAGTGCAGACTGGTCTC...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATTCTCCACTAGCTCCCTaGTGTTTGATGCTTTGTCTG +
Preference number: 4 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDSPLAP*CLMLCL
Trigger: CAGACAAAGCATCAAACAGCAGGGAGCTAGTGGAGA...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAAAGATGAAGTGGCGCTaGAGAGCTGGGCTCTGCTCA +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKKMKWR*RAGLCS
Trigger: TGAGCAGAGCCCAGCTCTGCAGCGCCACTTCATCTT...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGACCCGACTTCACCTTCTaGTTCTGGAGAGGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGPDFTF*FWRGLP
Trigger: AGGAAGCCCTCTCCAGAACCAGAAGGTGAAGTCGGG...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTAATGAGGTGAGGCAGTaGGTGGTGGCGGAGACACAA +
Preference number: 4 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCNEVRQ*VVAETQ
Trigger: TTGTGTCTCCGCCACCACCCACTGCCTCACCTCATT...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATTTTAAAAAGATGAAGTaGCGCTGCAGAGCTGGGCTC +
Preference number: 4 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDFKKMK*RCRAGL
Trigger: GAGCCCAGCTCTGCAGCGCCACTTCATCTTTTTAAA...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAGCATCTTTTGAGGCATaGCTGCCCCCTGCATTGTCT +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKASFEA*LPPALS
Trigger: AGACAATGCAGGGGGCAGTCATGCCTCAAAAGATGC...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTATACAGCCATGTTTATaGAGTCTACATTTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFIQPCL*SLHFPC
Trigger: ACAAGGGAAATGTAGACTTCATAAACATGGCTGTAT...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATACTTTCCTACTCCTCTaGGGACAATGTTTCAGGGTA +
Preference number: 4 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDTFLLL*GQCFRV
Trigger: TACCCTGAAACATTGTCCTCAGAGGAGTAGGAAAGT...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp ATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCTTTCCTTAGGATTTGAAATCTaGTACTGCCCATGTACAGTA +
Preference number: 4 (lower is better)
Translates to: ISQWHAHLTTCPFDHFLSLGFEI*YCPCTV
Trigger: TACTGTACATGGGCAGTATCAGATTTCAAATCCTAA...GGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGGTTGCAATTTCCCCTTaGATAAAGGCCCAGGGGACA +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKVAISP*IKAQGT
Trigger: TGTCCCCTGGGCCTTTATGCAAGGGGAAATTGCAAC...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTAGAGAAACCACAGGTTaGCCTTTCCACAGCTGGATA +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTRETTG*PFHSWI
Trigger: TATCCAGCTGTGGAAAGGGCAACCTGTGGTTTCTCT...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTTGCTGTTCTTGCAACTaGTTTAGACCCGTTGGCCCC +
Preference number: 4 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCCCSCN*FRPVGP
Trigger: GGGGCCAACGGGTCTAAAGCAGTTGCAAGAACAGCA...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000366609.4
CDS-3UTR CCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTTTCACCTTCTGGTTCTaGAGAGGGCTTCCTTTTCCT +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTFTFWF*RGLPFP
Trigger: AGGAAAAGGAAGCCCTCTCCAGAACCAGAAGGTGAA...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTTTCAGGGTAAACTGGTaGTATTTCCCAGTGGCATGC +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTFRVNW*YFPVAC
Trigger: GCATGCCACTGGGAAATACCACCAGTTTACCCTGAA...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGAGTTGCAATTTCCCCTTaGATAAAGGCCCAGGGGACA +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGVAISP*IKAQGT
Trigger: TGTCCCCTGGGCCTTTATGCAAGGGGAAATTGCAAC...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTGGTCAAATTCCAAAGTaGCTAGATACACATTTATAC +
Preference number: 4 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFGQIPK*LDTHLY
Trigger: GTATAAATGTGTATCTAGGCACTTTGGAATTTGACC...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGAGAGAAACCACAGGTTaGCCTTTCCACAGCTGGATA +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKRETTG*PFHSWI
Trigger: TATCCAGCTGTGGAAAGGGCAACCTGTGGTTTCTCT...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAATGACAGAATTCAGGTaGTATTTCCATAGCGTGATT +
Preference number: 4 (lower is better)
Translates to: KECQKTQINTFQLRAVHKMTEFR*YFHSVI
Trigger: AATCACGCTATGGAAATATCACCTGAATTCTGTCAT...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGATGGAGTGAACCTGGTTaGCATCTTTTGAGGCATGAC +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGWSEPG*HLLRHD
Trigger: GTCATGCCTCAAAAGATGCCAACCAGGTTCACTCCA...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGTTACAACTGATCACGTaGACAGTGAACAGCGGTCAA +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKLQLIT*TVNSGQ
Trigger: TTGACCGCTGTTCACTGTCCACGTGATCAGTTGTAA...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATATACAGCCATGTTTATaGAGTCTACATTTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDIQPCL*SLHFPC
Trigger: ACAAGGGAAATGTAGACTTCATAAACATGGCTGTAT...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATATTAGGTCAAACGACTaGTCAAGTTGTAACATCTGT +
Preference number: 4 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDIRSND*SSCNIC
Trigger: ACAGATGTTACAACTTGATCAGTCGTTTGACCTAAT...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAGGGCTTCCTTTTCCTTaGTGTTCTTGCAACTGCTTT +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKGLPFP*CSCNCF
Trigger: AAAGCAGTTGCAAGAACAGCAAGGAAAAGGAAGCCC...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000366609.4
CDS-3UTR CCA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAAGTAAGTGTAACAACTaGTTAATCATGCAAGTCTGT +
Preference number: 4 (lower is better)
Translates to: KECQKTQINTFQLRAVHKSKCNN*LIMQVC
Trigger: ACAGACTTGCATGATTAACCAGTTGTTACACTTACT...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTTTTCCTTGCTGTTCTTaGAACTGCTTTAGACCCGTT +
Preference number: 4 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCFPCCS*NCFRPV
Trigger: AACGGGTCTAAAGCAGTTGCAAGAACAGCAAGGAAA...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000366609.4
CDS-3UTR CCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATTTTTATCCAGCTGTaGAGAATCTCTGCACTGTCA +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKIFIQL*RISALS
Trigger: TGACAGTGCAGAGATTCTCCACAGCTGGATAAAAAT...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGCAGTATCTCAGGAACTaGACTTTTGAGCAAAATAGA +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKQYLRN*TFEQNR
Trigger: TCTATTTTGCTCAAAAGTTCAGTTCCTGAGATACTG...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR GCA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTGGTCAAATTCCAAAGTaGCTAGATACACATTTATAC +
Preference number: 4 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTGQIPK*LDTHLY
Trigger: GTATAAATGTGTATCTAGGCACTTTGGAATTTGACC...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGAATTTTTATCCAGCTGTaGAGAATCTCTGCACTGTCA +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGIFIQL*RISALS
Trigger: TGACAGTGCAGAGATTCTCCACAGCTGGATAAAAAT...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
3UTR CAA 72 bp GCACTCTCAGTCATCAGTATCTCAGGAACTGAACTTTaGAGCAAAATAGAGATTCAAAATCCACTTTCCTAC +
Preference number: 4 (lower is better)
Translates to: ALSVISISGTEL*SKIEIQNPLSY
Trigger: GTAGGAAAGTGGATTTTGAATCTCTATTTTGCTCAAAAGTTCAGTTCCTGAGATACTGATGACTGAGAGTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGAATAGAAGCTAGGCTGTaGACCATACACATAAATTGT +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGIEARL*TIHINC
Trigger: ACAATTTATGTGTATGGTTCACAGCCTAGCTTCTAT...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGATTAGGATTTGAAATCTaGTACTGCCCATGTACAGTA +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGLGFEI*YCPCTV
Trigger: TACTGTACATGGGCAGTATCAGATTTCAAATCCTAA...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR TCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAATGACAGAATTCAGGTaGTATTTCCATAGCGTGATT +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKMTEFR*YFHSVI
Trigger: AATCACGCTATGGAAATATCACCTGAATTCTGTCAT...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGTCCAAAACGGCAGGATaGTTCTGTATTAATCTTTTT +
Preference number: 4 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKSKTAG*FCINLF
Trigger: AAAAAGATTAATACAGAACCATCCTGCCGTTTTGGA...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGAATTAAGGGTAATCATTaGGTTTTTCTGAAACCGGAA +
Preference number: 4 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGIKGNH*VFLKPE
Trigger: TTCCGGTTTCAGAAAAACCCAATGATTACCCTTAAT...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CCA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAAGTAAGTGTAACAACTaGTTAATCATGCAAGTCTGT +
Preference number: 4 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKSKCNN*LIMQVC
Trigger: ACAGACTTGCATGATTAACCAGTTGTTACACTTACT...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 90 bp TCTTGCCCGCACCTTCCGCGCTCAGCTCGGCGGCCCCGGCCGCGGTaGACAGGCTGTCGGCCGGGCCCCGGTGCGCAGGCGGCGGCGGTT +
Preference number: 5 (lower is better)
Translates to: SCPHLPRSARRPRPR*TGCRPGPGAQAAAV
Trigger: AACCGCCGCCGCCTGCGCACCGGGGCCCGGCCGACAGCCTGTCCACCGCGGCCGGGGCCGCCGAGCTGAGCGCGGAAGGTGCGGGCAAGA
80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 90 bp TCGGCGGCCCCGGCCGCGGTGGACAGGCTGTCGGCCGGGCCCCGGTaGGCAGGCGGCGGCGGTTGTTTCTCCTTGGCTGCCGCCTCACGC +
Preference number: 5 (lower is better)
Translates to: SAAPAAVDRLSAGPR*AGGGGCFSLAAASR
Trigger: GCGTGAGGCGGCAGCCAAGGAGAAACAACCGCCGCCGCCTGCGCACCGGGGCCCGGCCGACAGCCTGTCCACCGCGGCCGGGGCCGCCGA
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 90 bp GGCACCAGGATGCCGTTCACGGGCGGCGGCTGCGGCGTCGGCGGCTaGGCCAGGCTCGCTGCCGGGCGGCTGCTGCCGAAGTCAGAGCCG +
Preference number: 5 (lower is better)
Translates to: GTRMPFTGGGCGVGG*ARLAAGRLLPKSEP
Trigger: CGGCTCTGACTTCGGCAGCAGCCGCCCGGCAGCGAGCCTGGCCCAGCCGCCGACGCCGCAGCCGCCGCCCGTGAACGGCATCCTGGTGCC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 90 bp CTCGACACGGATGCCGGCCGCTTGTGGGCGCCCAGATCGGTGGGCTaGGCGGAGCCCAGGCTGGCGGCCGCGGTTCCGGACACCGCGGCT +
Preference number: 5 (lower is better)
Translates to: LDTDAGRLWAPRSVG*AEPRLAAAVPDTAA
Trigger: AGCCGCGGTGTCCGGAACCGCGGCCGCCAGCCTGGGCTCCGCGCAGCCCACCGATCTGGGCGCCCACAAGCGGCCGGCATCCGTGTCGAG
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 90 bp GCTGCTGCTGCAAAAGGATGTCCTTGGCGGAGAGCGGCGGCGGCTTaGCGGCGGCCGAGGCCGCGGCGCCGGGTGGGGAGCGACCCTCCG +
Preference number: 5 (lower is better)
Translates to: AAAAKGCPWRRAAAA*RRPRPRRRVGSDPP
Trigger: CGGAGGGTCGCTCCCCACCCGGCGCCGCGGCCTCGGCCGCCGCCAAGCCGCCGCCGCTCTCCGCCAAGGACATCCTTTTGCAGCAGCAGC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 90 bp GTGGCCGAGCCGTTCATGAGCGGCACCAGGGTGGGCGGCACCGCGTaGCCGCGCCGCGGGTTCGGGCTCTGGCGATTCAGCTCGGGCGGC +
Preference number: 5 (lower is better)
Translates to: VAEPFMSGTRVGGTA*PRRGFGLWRFSSGG
Trigger: GCCGCCCGAGCTGAATCGCCAGAGCCCGAACCCGCGGCGCGGCCACGCGGTGCCGCCCACCCTGGTGCCGCTCATGAACGGCTCGGCCAC
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 90 bp CGCTGCTCGACACGGATGCCGGCCGCTTGTGGGCGCCCAGATCGGTaGGCTGCGCGGAGCCCAGGCTGGCGGCCGCGGTTCCGGACACCG +
Preference number: 5 (lower is better)
Translates to: RCSTRMPAACGRPDR*AARSPGWRPRFRTP
Trigger: CGGTGTCCGGAACCGCGGCCGCCAGCCTGGGCTCCGCGCAGCCCACCGATCTGGGCGCCCACAAGCGGCCGGCATCCGTGTCGAGCAGCG
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 90 bp TTGGAGAAGCCGTTGGGCACCAGGATGCCGTTCACGGGCGGCGGCTaGGGCGTCGGCGGCTGGGCCAGGCTCGCTGCCGGGCGGCTGCTG +
Preference number: 5 (lower is better)
Translates to: LEKPLGTRMPFTGGG*GVGGWARLAAGRLL
Trigger: CAGCAGCCGCCCGGCAGCGAGCCTGGCCCAGCCGCCGACGCCGCAGCCGCCGCCCGTGAACGGCATCCTGGTGCCCAACGGCTTCTCCAA
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 90 bp GGCCGCCGTGGCCAAGCTGCTGCTGCTGCTGCAAAAGGATGTCCTTaGCGGAGAGCGGCGGCGGCTTGGCGGCGGCCGAGGCCGCGGCGC +
Preference number: 5 (lower is better)
Translates to: GRRGQAAAAAAKGCP*RRAAAAWRRPRPRR
Trigger: GCGCCGCGGCCTCGGCCGCCGCCAAGCCGCCGCCGCTCTCCGCCAAGGACATCCTTTTGCAGCAGCAGCAGCAGCTTGGCCACGGCGGCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 90 bp TCGTGCTCCACGGCAGCGCTGCTCGACACGGATGCCGGCCGCTTGTaGGCGCCCAGATCGGTGGGCTGCGCGGAGCCCAGGCTGGCGGCC +
Preference number: 5 (lower is better)
Translates to: SCSTAALLDTDAGRL*APRSVGCAEPRLAA
Trigger: GGCCGCCAGCCTGGGCTCCGCGCAGCCCACCGATCTGGGCGCCCACAAGCGGCCGGCATCCGTGTCGAGCAGCGCTGCCGTGGAGCACGA
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 90 bp CGCCTCACGCTGCTCGTGCTCCACGGCAGCGCTGCTCGACACGGATaGCGGCCGCTTGTGGGCGCCCAGATCGGTGGGCTGCGCGGAGCC +
Preference number: 5 (lower is better)
Translates to: RLTLLVLHGSAARHG*RPLVGAQIGGLRGA
Trigger: GGCTCCGCGCAGCCCACCGATCTGGGCGCCCACAAGCGGCCGGCATCCGTGTCGAGCAGCGCTGCCGTGGAGCACGAGCAGCGTGAGGCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 90 bp GGCCGGGCCCCGGTGCGCAGGCGGCGGCGGTTGTTTCTCCTTGGCTaGCGCCTCACGCTGCTCGTGCTCCACGGCAGCGCTGCTCGACAC +
Preference number: 5 (lower is better)
Translates to: GRAPVRRRRRLFLLG*RLTLLVLHGSAARH
Trigger: GTGTCGAGCAGCGCTGCCGTGGAGCACGAGCAGCGTGAGGCGGCAGCCAAGGAGAAACAACCGCCGCCGCCTGCGCACCGGGGCCCGGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 90 bp TGTCGGCCGGGCCCCGGTGCGCAGGCGGCGGCGGTTGTTTCTCCTTaGCTGCCGCCTCACGCTGCTCGTGCTCCACGGCAGCGCTGCTCG +
Preference number: 5 (lower is better)
Translates to: CRPGPGAQAAAVVSP*LPPHAARAPRQRCS
Trigger: CGAGCAGCGCTGCCGTGGAGCACGAGCAGCGTGAGGCGGCAGCCAAGGAGAAACAACCGCCGCCGCCTGCGCACCGGGGCCCGGCCGACA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 90 bp TGCGCAGGCGGCGGCGGTTGTTTCTCCTTGGCTGCCGCCTCACGCTaGTCGTGCTCCACGGCAGCGCTGCTCGACACGGATGCCGGCCGC +
Preference number: 5 (lower is better)
Translates to: CAGGGGCFSLAAASR*SCSTAALLDTDAGR
Trigger: GCGGCCGGCATCCGTGTCGAGCAGCGCTGCCGTGGAGCACGAGCAGCGTGAGGCGGCAGCCAAGGAGAAACAACCGCCGCCGCCTGCGCA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 90 bp ACCAGGGTGGGCGGCACCGCGTGGCCGCGCCGCGGGTTCGGGCTCTaGCGATTCAGCTCGGGCGGCTCCTCTAGCTTGGAGAAGCCGTTG +
Preference number: 5 (lower is better)
Translates to: TRVGGTAWPRRGFGL*RFSSGGSSSLEKPL
Trigger: CAACGGCTTCTCCAAGCTAGAGGAGCCGCCCGAGCTGAATCGCCAGAGCCCGAACCCGCGGCGCGGCCACGCGGTGCCGCCCACCCTGGT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 90 bp TCTCCTTGGCTGCCGCCTCACGCTGCTCGTGCTCCACGGCAGCGCTaGTCGACACGGATGCCGGCCGCTTGTGGGCGCCCAGATCGGTGG +
Preference number: 5 (lower is better)
Translates to: SPWLPPHAARAPRQR*STRMPAACGRPDRW
Trigger: CCACCGATCTGGGCGCCCACAAGCGGCCGGCATCCGTGTCGAGCAGCGCTGCCGTGGAGCACGAGCAGCGTGAGGCGGCAGCCAAGGAGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 90 bp GGCGGCGGCGGTTGTTTCTCCTTGGCTGCCGCCTCACGCTGCTCGTaGTCCACGGCAGCGCTGCTCGACACGGATGCCGGCCGCTTGTGG +
Preference number: 5 (lower is better)
Translates to: GGGGCFSLAAASRCS*STAALLDTDAGRLW
Trigger: CCACAAGCGGCCGGCATCCGTGTCGAGCAGCGCTGCCGTGGAGCACGAGCAGCGTGAGGCGGCAGCCAAGGAGAAACAACCGCCGCCGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 90 bp CTCCAGCCGCTCGTGGCAGAGGGTGCAGCACAGCGGGGCACTGGTTaGCAGAGAGGAGTCCGGGAGGCTGGCAGGGTGCACTGGCTCCAG +
Preference number: 5 (lower is better)
Translates to: LQPLVAEGAAQRGTG*QRGVREAGRVHWLQ
Trigger: CTGGAGCCAGTGCACCCTGCCAGCCTCCCGGACTCCTCTCTGGCAACCAGTGCCCCGCTGTGCTGCACCCTCTGCCACGAGCGGCTGGAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000366609.4
ENST00000366610.7
ENST00000491430.1
CDS CCA 90 bp TCTGGCGATTCAGCTCGGGCGGCTCCTCTAGCTTGGAGAAGCCGTTaGGCACCAGGATGCCGTTCACGGGCGGCGGCTGCGGCGTCGGCG +
Preference number: 5 (lower is better)
Translates to: SGDSARAAPLAWRSR*APGCRSRAAAAASA
Trigger: CGCCGACGCCGCAGCCGCCGCCCGTGAACGGCATCCTGGTGCCCAACGGCTTCTCCAAGCTAGAGGAGCCGCCCGAGCTGAATCGCCAGA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 90 bp GCGGGTTCGGGCTCTGGCGATTCAGCTCGGGCGGCTCCTCTAGCTTaGAGAAGCCGTTGGGCACCAGGATGCCGTTCACGGGCGGCGGCT +
Preference number: 5 (lower is better)
Translates to: AGSGSGDSARAAPLA*RSRWAPGCRSRAAA
Trigger: AGCCGCCGCCCGTGAACGGCATCCTGGTGCCCAACGGCTTCTCCAAGCTAGAGGAGCCGCCCGAGCTGAATCGCCAGAGCCCGAACCCGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 90 bp GGCACTGCACAAAATGGGTGTCCTCCAGCCGCTCGTGGCAGAGGGTaGAGCACAGCGGGGCACTGGTTGCCAGAGAGGAGTCCGGGAGGC +
Preference number: 5 (lower is better)
Translates to: GTAQNGCPPAARGRG*STAGHWLPERSPGG
Trigger: GCCTCCCGGACTCCTCTCTGGCAACCAGTGCCCCGCTGTGCTGCACCCTCTGCCACGAGCGGCTGGAGGACACCCATTTTGTGCAGTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000366609.4
ENST00000366610.7
ENST00000491430.1
CDS CCA 90 bp GTCAGGGCCGGCTCCTTCTTAAACTTGCTCTCGAAGGGCCCCGAGTaGCCGTGCTGGTGCAGCGCCAGCAGCGTGTCGCGCACGGTCTTG +
Preference number: 5 (lower is better)
Translates to: VRAGSFLNLLSKGPE*PCWCSASSVSRTVL
Trigger: CAAGACCGTGCGCGACACGCTGCTGGCGCTGCACCAGCACGGCCACTCGGGGCCCTTCGAGAGCAAGTTTAAGAAGGAGCCGGCCCTGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 90 bp TTTAGACCCGTTGGCCCCGTTGGCCTCGAAACCCAACAACCTGCCTaGAGTCAGGGCCGGCTCCTTCTTAAACTTGCTCTCGAAGGGCCC +
Preference number: 5 (lower is better)
Translates to: FRPVGPVGLETQQPA*SQGRLLLKLALEGP
Trigger: GGGCCCTTCGAGAGCAAGTTTAAGAAGGAGCCGGCCCTGACTGCAGGCAGGTTGTTGGGTTTCGAGGCCAACGGGGCCAACGGGTCTAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000366609.4
CDS-3UTR CAA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTGGCTGGGCCTCTCCGTaGATCTTAGGGGGCCCGACT +
Preference number: 5 (lower is better)
Translates to: QINTFQLRAVHKGHPKASGWASP*ILGGPT
Trigger: AGTCGGGCCCCCTAAGATCAACGGAGAGGCCCAGCC...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTACAGCGGGGCACTGGTaGCCAGAGAGGAGTCCGGGA +
Preference number: 5 (lower is better)
Translates to: QINTFQLRAVHKGHPKASTAGHW*PERSPG
Trigger: TCCCGGACTCCTCTCTGGCAACCAGTGCCCCGCTGT...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp ATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCTTTCCACGGATGCCGGCCGCTaGTGGGCGCCCAGATCGGTG +
Preference number: 5 (lower is better)
Translates to: ISQWHAHLTTCPFDHFLSTDAGR*WAPRSV
Trigger: CACCGATCTGGGCGCCCACAAGCGGCCGGCATCCGT...GGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCGCAGGCGGCGGCGGTaGTTTCTCCTTGGCTGCCGC +
Preference number: 5 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFRRRRR*FLLGCR
Trigger: GCGGCAGCCAAGGAGAAACAACCGCCGCCGCCTGCG...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTGACCCGTTGGCCCCGTaGGCCTCGAAACCCAACAAC +
Preference number: 5 (lower is better)
Translates to: QINTFQLRAVHKGHPKASDPLAP*ASKPNN
Trigger: GTTGTTGGGTTTCGAGGCCAACGGGGCCAACGGGTC...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000366609.4
CDS-3UTR CAA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTAGCTTGGAGAAGCCGTaGGGCACCAGGATGCCGTTC +
Preference number: 5 (lower is better)
Translates to: QINTFQLRAVHKGHPKASSLEKP*GTRMPF
Trigger: GAACGGCATCCTGGTGCCCAACGGCTTCTCCAAGCT...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTCAAGGGAAGCAGAACTaGTGCGAAGGGACGGACGGG +
Preference number: 5 (lower is better)
Translates to: QINTFQLRAVHKGHPKASQGKQN*CEGTDG
Trigger: CCCGTCCGTCCCTTCGCACAAGTTCTGCTTCCCTTG...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTTGCAAAAGGATGTCCTaGGCGGAGAGCGGCGGCGGC +
Preference number: 5 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFCKRMS*AESGGG
Trigger: GCCGCCGCCGCTCTCCGCCAAGGACATCCTTTTGCA...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp ATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCTTTCCTGCAAAAGGATGTCCTaGGCGGAGAGCGGCGGCGGC +
Preference number: 5 (lower is better)
Translates to: ISQWHAHLTTCPFDHFLSCKRMS*AESGGG
Trigger: GCCGCCGCCGCTCTCCGCCAAGGACATCCTTTTGCA...GGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAACGGATGCCGGCCGCTaGTGGGCGCCCAGATCGGTG +
Preference number: 5 (lower is better)
Translates to: KECQKTQINTFQLRAVHKTDAGR*WAPRSV
Trigger: CACCGATCTGGGCGCCCACAAGCGGCCGGCATCCGT...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTGGAGTCATGGGGATCTaGAGCCCCTCTGTGGATGTG +
Preference number: 5 (lower is better)
Translates to: QINTFQLRAVHKGHPKASGVMGI*SPSVDV
Trigger: CACATCCACAGAGGGGCTCAAGATCCCCATGACTCC...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTGGAGAGGGCGGACTGTaGCTATTCCTCCTGGTAGTG +
Preference number: 5 (lower is better)
Translates to: QINTFQLRAVHKGHPKASGEGGL*LFLLVV
Trigger: CACTACCAGGAGGAATAGCAACAGTCCGCCCTCTCC...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 90 bp GGCCTCTCCGTTGATCTTAGGGGGCCCGACTTCACCTTCTGGTTCTaGAGAGGGCTTCCTTTTCCTTGCTGTTCTTGCAACTGCAGTCAG +
Preference number: 5 (lower is better)
Translates to: GLSVDLRGPDFTFWF*RGLPFPCCSCNCSQ
Trigger: CTGACTGCAGTTGCAAGAACAGCAAGGAAAAGGAAGCCCTCTCCAGAACCAGAAGGTGAAGTCGGGCCCCCTAAGATCAACGGAGAGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000366610.7
CDS-3UTR CAA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGTGTCGCGCACGGTCTaGGGCCTGTTGACCCAGTCC +
Preference number: 5 (lower is better)
Translates to: KECQKTQINTFQLRAVHKVSRTV*GLLTQS
Trigger: GGACTGGGTCAACAGGCCCAAGACCGTGCGCGACAC...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 90 bp GGCCTCTCCGTTGATCTTAGGGGGCCCGACTTCACCTTCTGGTTCTaGAGAGGGCTTCCTTTTCCTTGCTGTTCTTGCAACTGCTTTAGA +
Preference number: 5 (lower is better)
Translates to: GLSVDLRGPDFTFWF*RGLPFPCCSCNCFR
Trigger: TCTAAAGCAGTTGCAAGAACAGCAAGGAAAAGGAAGCCCTCTCCAGAACCAGAAGGTGAAGTCGGGCCCCCTAAGATCAACGGAGAGGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000366609.4
CDS-3UTR CAA 90 bp ATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTCCTTTCCGGGGCCCAGCCTTCTTaGGTTCATAGAGGACGGAGA +
Preference number: 5 (lower is better)
Translates to: ISQWHAHLTTCPFDHFLSGAQPS*VHRGRR
Trigger: TCTCCGTCCTCTATGAACCAAAGAAGGCTGGGCCCC...GGAAAGGAAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp CAGATCAACACTTTCCAGCTACGAGCCGTCCACAAAGGCCACCCAAAGGCCAGTCTGCTGTTTGATGCTTaGTCTGGAGCAAGGGAAGCA +
Preference number: 5 (lower is better)
Translates to: QINTFQLRAVHKGHPKASLLFDA*SGAREA
Trigger: TGCTTCCCTTGCTCCAGACAAAGCATCAAACAGCAG...ACTGGCCTTTGGGTGGCCTTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTACTGCTTTAGACCCGTaGGCCCCGTTGGCCTCGAAA +
Preference number: 5 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFTALDP*APLASK
Trigger: TTTCGAGGCCAACGGGGCCAACGGGTCTAAAGCAGT...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000366609.4
CDS-3UTR CAA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTGGCGGCTCCTCTAGCTaGGAGAAGCCGTTGGGCACC +
Preference number: 5 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTGGSSS*EKPLGT
Trigger: GGTGCCCAACGGCTTCTCCAAGCTAGAGGAGCCGCC...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTGTGTCGCGCACGGTCTaGGGCCTGTTGACCCAGTCC +
Preference number: 5 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTVSRTV*GLLTQS
Trigger: GGACTGGGTCAACAGGCCCAAGACCGTGCGCGACAC...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTGGCTGGGCCTCTCCGTaGATCTTAGGGGGCCCGACT +
Preference number: 5 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTGWASP*ILGGPT
Trigger: AGTCGGGCCCCCTAAGATCAACGGAGAGGCCCAGCC...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTACAGCGGGGCACTGGTaGCCAGAGAGGAGTCCGGGA +
Preference number: 5 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTTAGHW*PERSPG
Trigger: TCCCGGACTCCTCTCTGGCAACCAGTGCCCCGCTGT...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp TGGTGGTATTTCCCAGTGGCATGCCCACTTGACAACATGCCCGTTCGATCATTTTTTTCCTTGCTGTTCTaGCAACTGCAGTCAGGGCCG +
Preference number: 5 (lower is better)
Translates to: WWYFPVACPLDNMPVRSFFSLLF*QLQSGP
Trigger: CGGCCCTGACTGCAGTTGCAAGAACAGCAAGGAAAA...AAATGATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTGGGAAATACCACCA
51% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENST00000366610.7
CDS-3UTR CAA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATCAAGGGAAGCAGAACTaGTGCGAAGGGACGGACGGG +
Preference number: 5 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDQGKQN*CEGTDG
Trigger: CCCGTCCGTCCCTTCGCACAAGTTCTGCTTCCCTTG...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTGGCGGTTGTTTCTCCTaGGCTGCCGCCTCACGCTGC +
Preference number: 5 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCGGCFS*AAASRC
Trigger: GCAGCGTGAGGCGGCAGCCAAGGAGAAACAACCGCC...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAGGCGGTTGTTTCTCCTaGGCTGCCGCCTCACGCTGC +
Preference number: 5 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKGGCFS*AAASRC
Trigger: GCAGCGTGAGGCGGCAGCCAAGGAGAAACAACCGCC...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp TCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGTTAACTACGGTCTTGGGCCTGTaGACCCAGTCCTGCTCTCCA +
Preference number: 5 (lower is better)
Translates to: SALSSGTTKDQTHVPMLTTVLGL*TQSCSP
Trigger: TGGAGAGCAGGACTGGGTCAACAGGCCCAAGACCGT...AGTTAACATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGACGGTCTTGGGCCTGTaGACCCAGTCCTGCTCTCCA +
Preference number: 5 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKTVLGL*TQSCSP
Trigger: TGGAGAGCAGGACTGGGTCAACAGGCCCAAGACCGT...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp GAGAATCTCTGCACTGTCATCAGGTACAACAAAAGATCAAACCCATGTCCCGATGGTTGCAATTTCCCCTaGCATAAAGGCCCAGGGGAC +
Preference number: 5 (lower is better)
Translates to: ENLCTVIRYNKRSNPCPDGCNFP*HKGPGD
Trigger: GTCCCCTGGGCCTTTATGCAAGGGGAAATTGCAACC...ATCGGGACATGGGTTTGATCTTTTGTTGTACCTGATGACAGTGCAGAGATTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAAGCTTGGAGAAGCCGTaGGGCACCAGGATGCCGTTC +
Preference number: 5 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKSLEKP*GTRMPF
Trigger: GAACGGCATCCTGGTGCCCAACGGCTTCTCCAAGCT...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAACTGCTGTTTGATGCTTaGTCTGGAGCAAGGGAAGCA +
Preference number: 5 (lower is better)
Translates to: KECQKTQINTFQLRAVHKLLFDA*SGAREA
Trigger: TGCTTCCCTTGCTCCAGACAAAGCATCAAACAGCAG...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTGGCTCCTTCTTAAACTaGCTCTCGAAGGGCCCCGAG +
Preference number: 5 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCGSFLN*LSKGPE
Trigger: CTCGGGGCCCTTCGAGAGCAAGTTTAAGAAGGAGCC...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAGGCTCCTTCTTAAACTaGCTCTCGAAGGGCCCCGAG +
Preference number: 5 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKGSFLN*LSKGPE
Trigger: CTCGGGGCCCTTCGAGAGCAAGTTTAAGAAGGAGCC...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTGGAGTCATGGGGATCTaGAGCCCCTCTGTGGATGTG +
Preference number: 5 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCGVMGI*SPSVDV
Trigger: CACATCCACAGAGGGGCTCAAGATCCCCATGACTCC...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAACCTGGTTGGCATCTTTaGAGGCATGACTGCCCCCTG +
Preference number: 5 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKPGWHL*RHDCPL
Trigger: CAGGGGGCAGTCATGCCTCAAAAGATGCCAACCAGG...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGACCTGGTTGGCATCTTTaGAGGCATGACTGCCCCCTG +
Preference number: 5 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGPGWHL*RHDCPL
Trigger: CAGGGGGCAGTCATGCCTCAAAAGATGCCAACCAGG...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGAGGAGAGGGCGGACTGTaGCTATTCCTCCTGGTAGTG +
Preference number: 5 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGGEGGL*LFLLVV
Trigger: CACTACCAGGAGGAATAGCAACAGTCCGCCCTCTCC...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp CAGCTCTTTAAAGCTGTTCATATTCTTCCCCCATTAAACACCAGTACAGAGAAAGGGGCCCAGCCTTCTTaGGTTCATAGAGGACGGAGA +
Preference number: 5 (lower is better)
Translates to: QLFKAVHILPPLNTSTEKGAQPS*VHRGRR
Trigger: TCTCCGTCCTCTATGAACCAAAGAAGGCTGGGCCCC...TTTCTCTGTACTGGTGTTTAATGGGGGAAGAATATGAACAGCTTTAAAGAGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGCAGTGGCATGCCCACTaGACAACATGCCCGTTCGAT +
Preference number: 5 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKQWHAH*TTCPFD
Trigger: ATCGAACGGGCATGTTGTCAAGTGGGCATGCCACTG...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTGGTTGCAATTTCCCCTaGCATAAAGGCCCAGGGGAC +
Preference number: 5 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCGCNFP*HKGPGD
Trigger: GTCCCCTGGGCCTTTATGCAAGGGGAAATTGCAACC...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGCTAGCTCCCTGCTGTTaGATGCTTTGTCTGGAGCAA +
Preference number: 5 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKLAPCC*MLCLEQ
Trigger: TTGCTCCAGACAAAGCATCAAACAGCAGGGAGCTAG...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTCTAGCTCCCTGCTGTTaGATGCTTTGTCTGGAGCAA +
Preference number: 5 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCLAPCC*MLCLEQ
Trigger: TTGCTCCAGACAAAGCATCAAACAGCAGGGAGCTAG...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp AAAGAATGCCAGAAAACCCAGATCAACACTTTCCAGCTACGAGCCGTCCACAAACCATCCCCTAATATTTaGAGTATTAAAAGCACAGCT +
Preference number: 5 (lower is better)
Translates to: KECQKTQINTFQLRAVHKPSPNI*SIKSTA
Trigger: AGCTGTGCTTTTAATACTCAAAATATTAGGGGATGG...TTTGTGGACGGCTCGTAGCTGGAAAGTGTTGATCTGGGTTTTCTGGCATTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp ACATTTTTATCCAGCTGTGGAGAATCTCTGCACTGTCATCAGGTACAACAAAAGGGAAAAACACTGTATTaGGTGCAGTATCTGATTTTC +
Preference number: 5 (lower is better)
Translates to: TFLSSCGESLHCHQVQQKGKTLY*VQYLIF
Trigger: GAAAATCAGATACTGCACCAAATACAGTGTTTTTCC...CTTTTGTTGTACCTGATGACAGTGCAGAGATTCTCCACAGCTGGATAAAAATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp AGCTGGATAGACTTATCCAAAACGGCAGGATGGTTCTGTATTAATCTTTTTGGAGGAAAAACACTGTATTaGGTGCAGTATCTGATTTTC +
Preference number: 5 (lower is better)
Translates to: SWIDLSKTAGWFCINLFGGKTLY*VQYLIF
Trigger: GAAAATCAGATACTGCACCAAATACAGTGTTTTTCC...TCCAAAAAGATTAATACAGAACCATCCTGCCGTTTTGGATAAGTCTATCCAGCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS-3UTR CAA 90 bp TCTCGCACAGTAGTAATAGGTGCACTCATTAAAAACACTACGGAAAAACACTGTCCATCCCCTAATATTTaGAGTATTAAAAGCACAGCT +
Preference number: 5 (lower is better)
Translates to: SRTVVIGALIKNTTEKHCPSPNI*SIKSTA
Trigger: AGCTGTGCTTTTAATACTCAAAATATTAGGGGATGG...ACAGTGTTTTTCCGTAGTGTTTTTAATGAGTGCACCTATTACTACTGTGCGAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS TCA 72 bp CGAGCGCGGTGGGCAGCGGCGTGGCCGAGCCGTTCATaGGCGGCACCAGGGTGGGCGGCACCGCGTGGCCGC +
Preference number: 6 (lower is better)
Translates to: RARWAAAWPSRS*AAPGWAAPRGR
Trigger: GCGGCCACGCGGTGCCGCCCACCCTGGTGCCGCTCATGAACGGCTCGGCCACGCCGCTGCCCACCGCGCTCG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 72 bp GATGCCGGCCGCTTGTGGGCGCCCAGATCGGTGGGCTaGGCGGAGCCCAGGCTGGCGGCCGCGGTTCCGGAC +
Preference number: 6 (lower is better)
Translates to: DAGRLWAPRSVG*AEPRLAAAVPD
Trigger: GTCCGGAACCGCGGCCGCCAGCCTGGGCTCCGCGCAGCCCACCGATCTGGGCGCCCACAAGCGGCCGGCATC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 72 bp CCGGCCGCGGTGGACAGGCTGTCGGCCGGGCCCCGGTaGGCAGGCGGCGGCGGTTGTTTCTCCTTGGCTGCC +
Preference number: 6 (lower is better)
Translates to: PAAVDRLSAGPR*AGGGGCFSLAA
Trigger: GGCAGCCAAGGAGAAACAACCGCCGCCGCCTGCGCACCGGGGCCCGGCCGACAGCCTGTCCACCGCGGCCGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 72 bp GCAAAAGGATGTCCTTGGCGGAGAGCGGCGGCGGCTTaGCGGCGGCCGAGGCCGCGGCGCCGGGTGGGGAGC +
Preference number: 6 (lower is better)
Translates to: AKGCPWRRAAAA*RRPRPRRRVGS
Trigger: GCTCCCCACCCGGCGCCGCGGCCTCGGCCGCCGCCAAGCCGCCGCCGCTCTCCGCCAAGGACATCCTTTTGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CAA 90 bp TGCTGCTGCTGCAAAAGGATGTCCTTGGCGGAGAGCGGCGGCGGCTaGGCGGCGGCCGAGGCCGCGGCGCCGGGTGGGGAGCGACCCTCC +
Preference number: 6 (lower is better)
Translates to: CCCCKRMSLAESGGG*AAAEAAAPGGERPS
Trigger: GGAGGGTCGCTCCCCACCCGGCGCCGCGGCCTCGGCCGCCGCCAAGCCGCCGCCGCTCTCCGCCAAGGACATCCTTTTGCAGCAGCAGCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CAA 90 bp GGGCCGCCGTGGCCAAGCTGCTGCTGCTGCTGCAAAAGGATGTCCTaGGCGGAGAGCGGCGGCGGCTTGGCGGCGGCCGAGGCCGCGGCG +
Preference number: 6 (lower is better)
Translates to: GPPWPSCCCCCKRMS*AESGGGLAAAEAAA
Trigger: CGCCGCGGCCTCGGCCGCCGCCAAGCCGCCGCCGCTCTCCGCCAAGGACATCCTTTTGCAGCAGCAGCAGCAGCTTGGCCACGGCGGCCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CAA 72 bp TGCAAAAGGATGTCCTTGGCGGAGAGCGGCGGCGGCTaGGCGGCGGCCGAGGCCGCGGCGCCGGGTGGGGAG +
Preference number: 6 (lower is better)
Translates to: CKRMSLAESGGG*AAAEAAAPGGE
Trigger: CTCCCCACCCGGCGCCGCGGCCTCGGCCGCCGCCAAGCCGCCGCCGCTCTCCGCCAAGGACATCCTTTTGCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 72 bp GGCGGCACCGCGTGGCCGCGCCGCGGGTTCGGGCTCTaGCGATTCAGCTCGGGCGGCTCCTCTAGCTTGGAG +
Preference number: 6 (lower is better)
Translates to: GGTAWPRRGFGL*RFSSGGSSSLE
Trigger: CTCCAAGCTAGAGGAGCCGCCCGAGCTGAATCGCCAGAGCCCGAACCCGCGGCGCGGCCACGCGGTGCCGCC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 72 bp CCGTTCATGAGCGGCACCAGGGTGGGCGGCACCGCGTaGCCGCGCCGCGGGTTCGGGCTCTGGCGATTCAGC +
Preference number: 6 (lower is better)
Translates to: PFMSGTRVGGTA*PRRGFGLWRFS
Trigger: GCTGAATCGCCAGAGCCCGAACCCGCGGCGCGGCCACGCGGTGCCGCCCACCCTGGTGCCGCTCATGAACGG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 72 bp ACGGCAGCGCTGCTCGACACGGATGCCGGCCGCTTGTaGGCGCCCAGATCGGTGGGCTGCGCGGAGCCCAGG +
Preference number: 6 (lower is better)
Translates to: TAALLDTDAGRL*APRSVGCAEPR
Trigger: CCTGGGCTCCGCGCAGCCCACCGATCTGGGCGCCCACAAGCGGCCGGCATCCGTGTCGAGCAGCGCTGCCGT
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CAA 72 bp TCCACGGCAGCGCTGCTCGACACGGATGCCGGCCGCTaGTGGGCGCCCAGATCGGTGGGCTGCGCGGAGCCC +
Preference number: 6 (lower is better)
Translates to: STAALLDTDAGR*WAPRSVGCAEP
Trigger: GGGCTCCGCGCAGCCCACCGATCTGGGCGCCCACAAGCGGCCGGCATCCGTGTCGAGCAGCGCTGCCGTGGA
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CAA 90 bp TGCTCGTGCTCCACGGCAGCGCTGCTCGACACGGATGCCGGCCGCTaGTGGGCGCCCAGATCGGTGGGCTGCGCGGAGCCCAGGCTGGCG +
Preference number: 6 (lower is better)
Translates to: CSCSTAALLDTDAGR*WAPRSVGCAEPRLA
Trigger: CGCCAGCCTGGGCTCCGCGCAGCCCACCGATCTGGGCGCCCACAAGCGGCCGGCATCCGTGTCGAGCAGCGCTGCCGTGGAGCACGAGCA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CAA 90 bp CTGTCGGCCGGGCCCCGGTGCGCAGGCGGCGGCGGTTGTTTCTCCTaGGCTGCCGCCTCACGCTGCTCGTGCTCCACGGCAGCGCTGCTC +
Preference number: 6 (lower is better)
Translates to: LSAGPRCAGGGGCFS*AAASRCSCSTAALL
Trigger: GAGCAGCGCTGCCGTGGAGCACGAGCAGCGTGAGGCGGCAGCCAAGGAGAAACAACCGCCGCCGCCTGCGCACCGGGGCCCGGCCGACAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CAA 90 bp GGTGGACAGGCTGTCGGCCGGGCCCCGGTGCGCAGGCGGCGGCGGTaGTTTCTCCTTGGCTGCCGCCTCACGCTGCTCGTGCTCCACGGC +
Preference number: 6 (lower is better)
Translates to: GGQAVGRAPVRRRRR*FLLGCRLTLLVLHG
Trigger: GCCGTGGAGCACGAGCAGCGTGAGGCGGCAGCCAAGGAGAAACAACCGCCGCCGCCTGCGCACCGGGGCCCGGCCGACAGCCTGTCCACC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 72 bp CTGCCGCCTCACGCTGCTCGTGCTCCACGGCAGCGCTaGTCGACACGGATGCCGGCCGCTTGTGGGCGCCCA +
Preference number: 6 (lower is better)
Translates to: LPPHAARAPRQR*STRMPAACGRP
Trigger: TGGGCGCCCACAAGCGGCCGGCATCCGTGTCGAGCAGCGCTGCCGTGGAGCACGAGCAGCGTGAGGCGGCAG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 72 bp GGCCCCGGTGCGCAGGCGGCGGCGGTTGTTTCTCCTTaGCTGCCGCCTCACGCTGCTCGTGCTCCACGGCAG +
Preference number: 6 (lower is better)
Translates to: GPGAQAAAVVSP*LPPHAARAPRQ
Trigger: CTGCCGTGGAGCACGAGCAGCGTGAGGCGGCAGCCAAGGAGAAACAACCGCCGCCGCCTGCGCACCGGGGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CAA 72 bp GGGCCCCGGTGCGCAGGCGGCGGCGGTTGTTTCTCCTaGGCTGCCGCCTCACGCTGCTCGTGCTCCACGGCA +
Preference number: 6 (lower is better)
Translates to: GPRCAGGGGCFS*AAASRCSCSTA
Trigger: TGCCGTGGAGCACGAGCAGCGTGAGGCGGCAGCCAAGGAGAAACAACCGCCGCCGCCTGCGCACCGGGGCCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 72 bp CTGCTCGTGCTCCACGGCAGCGCTGCTCGACACGGATaGCGGCCGCTTGTGGGCGCCCAGATCGGTGGGCTG +
Preference number: 6 (lower is better)
Translates to: LLVLHGSAARHG*RPLVGAQIGGL
Trigger: CAGCCCACCGATCTGGGCGCCCACAAGCGGCCGGCATCCGTGTCGAGCAGCGCTGCCGTGGAGCACGAGCAG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 72 bp CCGGTGCGCAGGCGGCGGCGGTTGTTTCTCCTTGGCTaGCGCCTCACGCTGCTCGTGCTCCACGGCAGCGCT +
Preference number: 6 (lower is better)
Translates to: PVRRRRRLFLLG*RLTLLVLHGSA
Trigger: AGCGCTGCCGTGGAGCACGAGCAGCGTGAGGCGGCAGCCAAGGAGAAACAACCGCCGCCGCCTGCGCACCGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 72 bp GCTCCTCTAGCTTGGAGAAGCCGTTGGGCACCAGGATaGCGTTCACGGGCGGCGGCTGCGGCGTCGGCGGCT +
Preference number: 6 (lower is better)
Translates to: APLAWRSRWAPG*RSRAAAAASAA
Trigger: AGCCGCCGACGCCGCAGCCGCCGCCCGTGAACGGCATCCTGGTGCCCAACGGCTTCTCCAAGCTAGAGGAGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CAA 90 bp CTCTGGCGATTCAGCTCGGGCGGCTCCTCTAGCTTGGAGAAGCCGTaGGGCACCAGGATGCCGTTCACGGGCGGCGGCTGCGGCGTCGGC +
Preference number: 6 (lower is better)
Translates to: LWRFSSGGSSSLEKP*GTRMPFTGGGCGVG
Trigger: GCCGACGCCGCAGCCGCCGCCCGTGAACGGCATCCTGGTGCCCAACGGCTTCTCCAAGCTAGAGGAGCCGCCCGAGCTGAATCGCCAGAG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CAA 90 bp CGCGGGTTCGGGCTCTGGCGATTCAGCTCGGGCGGCTCCTCTAGCTaGGAGAAGCCGTTGGGCACCAGGATGCCGTTCACGGGCGGCGGC +
Preference number: 6 (lower is better)
Translates to: RGFGLWRFSSGGSSS*EKPLGTRMPFTGGG
Trigger: GCCGCCGCCCGTGAACGGCATCCTGGTGCCCAACGGCTTCTCCAAGCTAGAGGAGCCGCCCGAGCTGAATCGCCAGAGCCCGAACCCGCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 72 bp GGTTGTTTCTCCTTGGCTGCCGCCTCACGCTGCTCGTaGTCCACGGCAGCGCTGCTCGACACGGATGCCGGC +
Preference number: 6 (lower is better)
Translates to: GCFSLAAASRCS*STAALLDTDAG
Trigger: GCCGGCATCCGTGTCGAGCAGCGCTGCCGTGGAGCACGAGCAGCGTGAGGCGGCAGCCAAGGAGAAACAACC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 72 bp GGCGGCGGTTGTTTCTCCTTGGCTGCCGCCTCACGCTaGTCGTGCTCCACGGCAGCGCTGCTCGACACGGAT +
Preference number: 6 (lower is better)
Translates to: GGGCFSLAAASR*SCSTAALLDTD
Trigger: ATCCGTGTCGAGCAGCGCTGCCGTGGAGCACGAGCAGCGTGAGGCGGCAGCCAAGGAGAAACAACCGCCGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 72 bp GGCTCCTTCTTAAACTTGCTCTCGAAGGGCCCCGAGTaGCCGTGCTGGTGCAGCGCCAGCAGCGTGTCGCGC +
Preference number: 6 (lower is better)
Translates to: GSFLNLLSKGPE*PCWCSASSVSR
Trigger: GCGCGACACGCTGCTGGCGCTGCACCAGCACGGCCACTCGGGGCCCTTCGAGAGCAAGTTTAAGAAGGAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS GCA 72 bp TTCTTAAACTTGCTCTCGAAGGGCCCCGAGTGGCCGTaGTGGTGCAGCGCCAGCAGCGTGTCGCGCACGGTC +
Preference number: 6 (lower is better)
Translates to: FLNLLSKGPEWP*WCSASSVSRTV
Trigger: GACCGTGCGCGACACGCTGCTGGCGCTGCACCAGCACGGCCACTCGGGGCCCTTCGAGAGCAAGTTTAAGAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 72 bp GGCTCTGGCGATTCAGCTCGGGCGGCTCCTCTAGCTTaGAGAAGCCGTTGGGCACCAGGATGCCGTTCACGG +
Preference number: 6 (lower is better)
Translates to: GSGDSARAAPLA*RSRWAPGCRSR
Trigger: CCGTGAACGGCATCCTGGTGCCCAACGGCTTCTCCAAGCTAGAGGAGCCGCCCGAGCTGAATCGCCAGAGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 72 bp TTAAACTTGCTCTCGAAGGGCCCCGAGTGGCCGTGCTaGTGCAGCGCCAGCAGCGTGTCGCGCACGGTCTTG +
Preference number: 6 (lower is better)
Translates to: LNLLSKGPEWPC*CSASSVSRTVL
Trigger: CAAGACCGTGCGCGACACGCTGCTGGCGCTGCACCAGCACGGCCACTCGGGGCCCTTCGAGAGCAAGTTTAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CAA 72 bp GGGCTCTGGCGATTCAGCTCGGGCGGCTCCTCTAGCTaGGAGAAGCCGTTGGGCACCAGGATGCCGTTCACG +
Preference number: 6 (lower is better)
Translates to: GLWRFSSGGSSS*EKPLGTRMPFT
Trigger: CGTGAACGGCATCCTGGTGCCCAACGGCTTCTCCAAGCTAGAGGAGCCGCCCGAGCTGAATCGCCAGAGCCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CAA 90 bp CTTGCTGTTCTTGCAACTGCAGTCAGGGCCGGCTCCTTCTTAAACTaGCTCTCGAAGGGCCCCGAGTGGCCGTGCTGGTGCAGCGCCAGC +
Preference number: 6 (lower is better)
Translates to: LAVLATAVRAGSFLN*LSKGPEWPCWCSAS
Trigger: GCTGGCGCTGCACCAGCACGGCCACTCGGGGCCCTTCGAGAGCAAGTTTAAGAAGGAGCCGGCCCTGACTGCAGTTGCAAGAACAGCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000366610.7
CDS CAA 90 bp TTGAGCCCCTCTGTGGATGTGGACAGCCACGGCTGGGCCTCTCCGTaGATCTTAGGGGGCCCGACTTCACCTTCTGGTTCTGGAGAGGGC +
Preference number: 6 (lower is better)
Translates to: LSPSVDVDSHGWASP*ILGGPTSPSGSGEG
Trigger: GCCCTCTCCAGAACCAGAAGGTGAAGTCGGGCCCCCTAAGATCAACGGAGAGGCCCAGCCGTGGCTGTCCACATCCACAGAGGGGCTCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000366609.4
ENST00000366610.7
ENST00000491430.1
CDS CCA 72 bp TTGTCTGCTACTAAGATCAGGGCTGCCATGGGGGACTaGCCATTCTGGGCCGCTTCAGGCGGTGTGGTCCGG +
Preference number: 6 (lower is better)
Translates to: LSATKIRAAMGD*PFWAASGGVVR
Trigger: CCGGACCACACCGCCTGAAGCGGCCCAGAATGGCCAGTCCCCCATGGCAGCCCTGATCTTAGTAGCAGACAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000366609.4
ENST00000366610.7
ENST00000491430.1
CDS CCA 72 bp AACTTGTGCGAAGGGACGGACGGGCACTGCACAAAATaGGTGTCCTCCAGCCGCTCGTGGCAGAGGGTGCAG +
Preference number: 6 (lower is better)
Translates to: NLCEGTDGHCTK*VSSSRSWQRVQ
Trigger: CTGCACCCTCTGCCACGAGCGGCTGGAGGACACCCATTTTGTGCAGTGCCCGTCCGTCCCTTCGCACAAGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000366609.4
ENST00000366610.7
ENST00000491430.1
CDS CAA 72 bp CTTGCAACTGCAGTCAGGGCCGGCTCCTTCTTAAACTaGCTCTCGAAGGGCCCCGAGTGGCCGTGCTGGTGC +
Preference number: 6 (lower is better)
Translates to: LATAVRAGSFLN*LSKGPEWPCWC
Trigger: GCACCAGCACGGCCACTCGGGGCCCTTCGAGAGCAAGTTTAAGAAGGAGCCGGCCCTGACTGCAGTTGCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000366610.7
CDS CCA 72 bp ATCTTGAGCCCCTCTGTGGATGTGGACAGCCACGGCTaGGCCTCTCCGTTGATCTTAGGGGGCCCGACTTCA +
Preference number: 6 (lower is better)
Translates to: ILSPSVDVDSHG*ASPLILGGPTS
Trigger: TGAAGTCGGGCCCCCTAAGATCAACGGAGAGGCCCAGCCGTGGCTGTCCACATCCACAGAGGGGCTCAAGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000366609.4
ENST00000366610.7
ENST00000491430.1
CDS CAA 72 bp TCTGTGGATGTGGACAGCCACGGCTGGGCCTCTCCGTaGATCTTAGGGGGCCCGACTTCACCTTCTGGTTCT +
Preference number: 6 (lower is better)
Translates to: SVDVDSHGWASP*ILGGPTSPSGS
Trigger: AGAACCAGAAGGTGAAGTCGGGCCCCCTAAGATCAACGGAGAGGCCCAGCCGTGGCTGTCCACATCCACAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000366609.4
ENST00000366610.7
ENST00000491430.1
CDS CAA 72 bp GCTGTTCTTGCAACTGCTTTAGACCCGTTGGCCCCGTaGGCCTCGAAACCCAACAACCTGCCTGCAGTCAGG +
Preference number: 6 (lower is better)
Translates to: AVLATALDPLAP*ASKPNNLPAVR
Trigger: CCTGACTGCAGGCAGGTTGTTGGGTTTCGAGGCCAACGGGGCCAACGGGTCTAAAGCAGTTGCAAGAACAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000366609.4
CDS CAA 72 bp CTTCACCTTCTGGTTCTGGAGAGGGCTTCCTTTTCCTaGCTGTTCTTGCAACTGCAGTCAGGGCCGGCTCCT +
Preference number: 6 (lower is better)
Translates to: LHLLVLERASFS*LFLQLQSGPAP
Trigger: AGGAGCCGGCCCTGACTGCAGTTGCAAGAACAGCAAGGAAAAGGAAGCCCTCTCCAGAACCAGAAGGTGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000366610.7
CDS GCA 72 bp TTCACCTTCTGGTTCTGGAGAGGGCTTCCTTTTCCTTaGTGTTCTTGCAACTGCAGTCAGGGCCGGCTCCTT +
Preference number: 6 (lower is better)
Translates to: FTFWFWRGLPFP*CSCNCSQGRLL
Trigger: AAGGAGCCGGCCCTGACTGCAGTTGCAAGAACAGCAAGGAAAAGGAAGCCCTCTCCAGAACCAGAAGGTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000366610.7
CDS GCA 72 bp TGGAGTGAACCTGGTTGGCATCTTTTGAGGCATGACTaGCCCCTGCATTGTCTGCTACTAAGATCAGGGCTG +
Preference number: 6 (lower is better)
Translates to: WSEPGWHLLRHD*PLHCLLLRSGL
Trigger: CAGCCCTGATCTTAGTAGCAGACAATGCAGGGGGCAGTCATGCCTCAAAAGATGCCAACCAGGTTCACTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000366609.4
ENST00000366610.7
ENST00000491430.1
CDS CCA 72 bp GTTGATCTTAGGGGGCCCGACTTCACCTTCTGGTTCTaGAGAGGGCTTCCTTTTCCTTGCTGTTCTTGCAAC +
Preference number: 6 (lower is better)
Translates to: VDLRGPDFTFWF*RGLPFPCCSCN
Trigger: GTTGCAAGAACAGCAAGGAAAAGGAAGCCCTCTCCAGAACCAGAAGGTGAAGTCGGGCCCCCTAAGATCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000366609.4
ENST00000366610.7
CDS CCA 72 bp GTTGATCTTAGGGGGCCCGACTTCACCTTCTGGTTCTaGAGAGGGCTTCCTTTTCCTTGCTGTTCTTGCAAG +
Preference number: 6 (lower is better)
Translates to: VDLRGPDFTFWF*RGLPFPCCSCK
Trigger: CTTGCAAGAACAGCAAGGAAAAGGAAGCCCTCTCCAGAACCAGAAGGTGAAGTCGGGCCCCCTAAGATCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000491430.1