Pregenerated sensors for IPO7 (Homo sapiens)

Ensembl gene IDs: ENSG00000205339

Ensembl transcript IDs: ENST00000379719.8, ENST00000533680.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	TTATGCTTGCTTCAGGGGCTACATCTGGGACTGAATAGCAGCATATaGCCCAAGGGCTGTGGTTTTGCCACTCATGCTCTATACTCTAGT	+
Preference number: 1 (lower is better) Translates to: LCLLQGLHLGLNSSI*PKGCGFATHALYSS Trigger: ACTAGAGTATAGAGCATGAGTGGCAAAACCACAGCCCTTGGGCCATATGCTGCTATTCAGTCCCAGATGTAGCCCCTGAAGCAAGCATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379719.8
3UTR CCA 72 bp	CTTCAGGGGCTACATCTGGGACTGAATAGCAGCATATaGCCCAAGGGCTGTGGTTTTGCCACTCATGCTCTA	+
Preference number: 3 (lower is better) Translates to: LQGLHLGLNSSI*PKGCGFATHAL Trigger: TAGAGCATGAGTGGCAAAACCACAGCCCTTGGGCCATATGCTGCTATTCAGTCCCAGATGTAGCCCCTGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379719.8
3UTR TCA 72 bp	TTTCTTTATGCTTGCTTCAGGGGCTACATCTGGGACTaGATAGCAGCATATGGCCCAAGGGCTGTGGTTTTG	+
Preference number: 3 (lower is better) Translates to: FLYACFRGYIWD*IAAYGPRAVVL Trigger: CAAAACCACAGCCCTTGGGCCATATGCTGCTATTCAGTCCCAGATGTAGCCCCTGAAGCAAGCATAAAGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000379719.8
CDS CCA 72 bp	TACAGATCAAAGAGGCTCCAATACATTTCCATTGCTTaGCTTGCACAAAAGGCTCTTCATAACTGGTTCCAG	+
Preference number: 6 (lower is better) Translates to: YRSKRLQYISIA*LAQKALHNWFQ Trigger: CTGGAACCAGTTATGAAGAGCCTTTTGTGCAAGCCAAGCAATGGAAATGTATTGGAGCCTCTTTGATCTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000533680.1
CDS CAA 72 bp	GATCAAAGAGGCTCCAATACATTTCCATTGCTTGGCTaGCACAAAAGGCTCTTCATAACTGGTTCCAGTCTT	+
Preference number: 6 (lower is better) Translates to: DQRGSNTFPLLG*HKRLFITGSSL Trigger: AAGACTGGAACCAGTTATGAAGAGCCTTTTGTGCAAGCCAAGCAATGGAAATGTATTGGAGCCTCTTTGATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000533680.1
CDS CCA 72 bp	TCCATTGCTTGGCTTGCACAAAAGGCTCTTCATAACTaGTTCCAGTCTTATTTCTCATCACTCCCTTATATT	+
Preference number: 6 (lower is better) Translates to: SIAWLAQKALHN*FQSYFSSLPYI Trigger: AATATAAGGGAGTGATGAGAAATAAGACTGGAACCAGTTATGAAGAGCCTTTTGTGCAAGCCAAGCAATGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000533680.1
CDS CAA 90 bp	AAAATTACAGATCAAAGAGGCTCCAATACATTTCCATTGCTTGGCTaGCACAAAAGGCTCTTCATAACTGGTTCCAGTCTTATTTCTCAT	+
Preference number: 6 (lower is better) Translates to: KITDQRGSNTFPLLG*HKRLFITGSSLISH Trigger: ATGAGAAATAAGACTGGAACCAGTTATGAAGAGCCTTTTGTGCAAGCCAAGCAATGGAAATGTATTGGAGCCTCTTTGATCTGTAATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000533680.1
CDS CAA 90 bp	ATATACTTTAAAATTACAGATCAAAGAGGCTCCAATACATTTCCATaGCTTGGCTTGCACAAAAGGCTCTTCATAACTGGTTCCAGTCTT	+
Preference number: 6 (lower is better) Translates to: IYFKITDQRGSNTFP*LGLHKRLFITGSSL Trigger: AAGACTGGAACCAGTTATGAAGAGCCTTTTGTGCAAGCCAAGCAATGGAAATGTATTGGAGCCTCTTTGATCTGTAATTTTAAAGTATAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000533680.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu