RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IL1B (Homo sapiens)

Ensembl gene IDs: ENSG00000125538

Ensembl transcript IDs: ENST00000263341.7, ENST00000416750.1, ENST00000418817.5, ENST00000432018.5, ENST00000477398.1, ENST00000487639.1, ENST00000491056.5, ENST00000496280.5

Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTTAGAACCAAATGTGGCCGTGGTTTCTGTCAGGCGGGCTTTAAGTaGGTAGGAGAGGTGAGAGAGGCCTGGCTCAACAAAAGGGCTGGG +
Preference number: 1 (lower is better)
Translates to: LRTKCGRGFCQAGFK*VGEVREAWLNKRAG
Trigger: CCCAGCCCTTTTGTTGAGCCAGGCCTCTCTCACCTCTCCTACTCACTTAAAGCCCGCCTGACAGAAACCACGGCCACATTTGGTTCTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000263341.7
3UTR CCA 90 bp ACAGGAGATCCTCTTAGCACTACCCTAAGGCAGGCAGTTGGGCATTaGTGTAGACAACAGGAAAGTCCAGGCTATAGCCGTACTCAAAAA +
Preference number: 1 (lower is better)
Translates to: TGDPLSTTLRQAVGH*CRQQESPGYSRTQK
Trigger: TTTTTGAGTACGGCTATAGCCTGGACTTTCCTGTTGTCTACACCAATGCCCAACTGCCTGCCTTAGGGTAGTGCTAAGAGGATCTCCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
3UTR-3UTR TCA 90 bp CAGAATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTCTGAAAGGAGAGAGCTaGCTGTCCTGGCTGATGGAC +
Preference number: 2 (lower is better)
Translates to: QNVGANDRGFLRTKCGRGLKGES*LSWLMD
Trigger: GTCCATCAGCCAGGACAGTCAGCTCTCTCCTTTCAG...ACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
3UTR-3UTR TCA 90 bp ATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTTTCTGCTGACTGTCCTGGCTaGTGGACAGGAGATCCTCTT +
Preference number: 2 (lower is better)
Translates to: MWERMTEGFLEPNVAVVSADCPG*WTGDPL
Trigger: AAGAGGATCTCCTGTCCATCAGCCAGGACAGTCAGC...AGAAACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
3UTR-3UTR CCA 90 bp CATCAGAATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGCTCAACAAAAGGGCTaGGGATTGGCCCTGAAAGGA +
Preference number: 2 (lower is better)
Translates to: HQNVGANDRGFLRTKCGRAQQKG*GLALKG
Trigger: TCCTTTCAGGGCCAATCCCCAGCCCTTTTGTTGAGC...ACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATTCTGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000263341.7
3UTR-3UTR CCA 90 bp AGGCTCTTTTACAGACACTGCTACTTCTTGCCCCCTTTGAATAAATTAGACCAAGAGGTGAGAGAGGCCTaGCTCAACAAAAGGGCTGGG +
Preference number: 2 (lower is better)
Translates to: RLFYRHCYFLPPLNKLDQEVREA*LNKRAG
Trigger: CCCAGCCCTTTTGTTGAGCCAGGCCTCTCTCACCTC...TTGGTCTAATTTATTCAAAGGGGGCAAGAAGTAGCAGTGTCTGTAAAAGAGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR TCA 90 bp GGTGAGAGAGGCCTGGCTCAACAAAAGGGCTGGGGATTGGCCCTGAAAGGAGAGGCCAGCCCTAGGGATTaGGTCCACATTCAGCACAGG +
Preference number: 4 (lower is better)
Translates to: GERGLAQQKGWGLALKGEASPRD*VHIQHR
Trigger: CCTGTGCTGAATGTGGACTCAATCCCTAGGGCTGGC...CTCTCCTTTCAGGGCCAATCCCCAGCCCTTTTGTTGAGCCAGGCCTCTCTCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR TCA 90 bp GTTCCCTTTCTGCCAGCCCTAGGGATTGAGTCCACATTCAGCACAGGACTCTCTCTGACGCGGCCTGCCTaGAGCCCTTGCTGTAGTGGT +
Preference number: 4 (lower is better)
Translates to: VPFLPALGIESTFSTGLSLTRPA*SPCCSG
Trigger: ACCACTACAGCAAGGGCTTCAGGCAGGCCGCGTCAG...AGAGAGTCCTGTGCTGAATGTGGACTCAATCCCTAGGGCTGGCAGAAAGGGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR TCA 90 bp GGTGAGAGAGGCCTGGCTCAACAAAAGGGCTGGGGATTGGCCCTGAAAGGAGAGGCAATGAAGATTGGCTaGAGAGAATCCCAGAGCAGC +
Preference number: 4 (lower is better)
Translates to: GERGLAQQKGWGLALKGEAMKIG*RESQSS
Trigger: GCTGCTCTGGGATTCTCTTCAGCCAATCTTCATTGC...CTCTCCTTTCAGGGCCAATCCCCAGCCCTTTTGTTGAGCCAGGCCTCTCTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR TCA 90 bp CAGAATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTCATGGCCACAACAACTaGCGCGGCCTGCCTGAAGCC +
Preference number: 4 (lower is better)
Translates to: QNVGANDRGFLRTKCGRGHGHNN*RGLPEA
Trigger: GGCTTCAGGCAGGCCGCGTCAGTTGTTGTGGCCATG...ACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp GGTGAGAGAGGCCTGGCTCAACAAAAGGGCTGGGGATTGGCCCTGAAAGGAGAGAAGCCATCATTTCACTaGCGAGCTCAGGTACTTCTG +
Preference number: 4 (lower is better)
Translates to: GERGLAQQKGWGLALKGEKPSFH*RAQVLL
Trigger: CAGAAGTACCTGAGCTCGCCAGTGAAATGATGGCTT...CTCTCCTTTCAGGGCCAATCCCCAGCCCTTTTGTTGAGCCAGGCCTCTCTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR TCA 90 bp GTTCCCTTTCTGCCAGCCCTAGGGATTGAGTCCACATTCAGCACAGGACTCTCTCTGCTTGAGAGGTGCTaGTGTACCAGTTGGGGAACT +
Preference number: 4 (lower is better)
Translates to: VPFLPALGIESTFSTGLSLLERC*CTSWGT
Trigger: AGTTCCCCAACTGGTACATCAGCACCTCTCAAGCAG...AGAGAGTCCTGTGCTGAATGTGGACTCAATCCCTAGGGCTGGCAGAAAGGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp CAGAATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTTCGGAGATTCGTAGCTaGATGCCGCCATCCAGAGGG +
Preference number: 4 (lower is better)
Translates to: QNVGANDRGFLRTKCGRGSEIRS*MPPSRG
Trigger: CCCTCTGGATGGCGGCATCCAGCTACGAATCTCCGA...ACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp CAGAATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTGAGGTGAGAGAGGCCTaGCTCAACAAAAGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: QNVGANDRGFLRTKCGRGEVREA*LNKRAG
Trigger: CCCAGCCCTTTTGTTGAGCCAGGCCTCTCTCACCTC...ACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR TCA 90 bp CAGAATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTGAGCGTGCAGTTCAGTaGTCGTACAGGTGCATCGTG +
Preference number: 4 (lower is better)
Translates to: QNVGANDRGFLRTKCGRGERAVQ*SYRCIV
Trigger: CACGATGCACCTGTACGATCACTGAACTGCACGCTC...ACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR TCA 90 bp GTTCCCTTTCTGCCAGCCCTAGGGATTGAGTCCACATTCAGCACAGGACTCTCTACAGATTCTTTTCCTTaGGGCCCAAGGCCACAGGTA +
Preference number: 4 (lower is better)
Translates to: VPFLPALGIESTFSTGLSTDSFP*GPRPQV
Trigger: TACCTGTGGCCTTGGGCCTCAAGGAAAAGAATCTGT...AGAGAGTCCTGTGCTGAATGTGGACTCAATCCCTAGGGCTGGCAGAAAGGGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR TCA 90 bp ATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTTTCTCAGGCGGGCTTTAAGTaGGTAGGAGAGGTGAGAGAG +
Preference number: 4 (lower is better)
Translates to: MWERMTEGFLEPNVAVVSQAGFK*VGEVRE
Trigger: CTCTCTCACCTCTCCTACTCACTTAAAGCCCGCCTG...AGAAACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR GCA 90 bp AATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTTTCAGATTCGTAGCTGGATaGCGCCATCCAGAGGGCAGA +
Preference number: 4 (lower is better)
Translates to: NVGANDRGFLRTKCGRGFRFVAG*RHPEGR
Trigger: TCTGCCCTCTGGATGGCGGCATCCAGCTACGAATCT...GAAACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp CATCAGAATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTCTCAGGTCATTCTCCTaGAAGGTCTGTGGGCAGGGA +
Preference number: 4 (lower is better)
Translates to: HQNVGANDRGFLRTKCGRLRSFS*KVCGQG
Trigger: TCCCTGCCCACAGACCTTCCAGGAGAATGACCTGAG...ACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATTCTGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp GGTGAGAGAGGCCTGGCTCAACAAAAGGGCTGGGGATTGGCCCTGAAAGGAGAGTCTTTGGGTAATTTTTaGGATCTACACTCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: GERGLAQQKGWGLALKGESLGNF*DLHSPA
Trigger: AGCTGGAGAGTGTAGATCCCAAAAATTACCCAAAGA...CTCTCCTTTCAGGGCCAATCCCCAGCCCTTTTGTTGAGCCAGGCCTCTCTCACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp GTTCCCTTTCTGCCAGCCCTAGGGATTGAGTCCACATTCAGCACAGGACTCTCTTTGCTCATCAGAATGTaGGAGCGAATGACAGAGGGT +
Preference number: 4 (lower is better)
Translates to: VPFLPALGIESTFSTGLSLLIRM*ERMTEG
Trigger: ACCCTCTGTCATTCGCTCCCACATTCTGATGAGCAA...AGAGAGTCCTGTGCTGAATGTGGACTCAATCCCTAGGGCTGGCAGAAAGGGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR TCA 90 bp GGTGAGAGAGGCCTGGCTCAACAAAAGGGCTGGGGATTGGCCCTGAAAGGAGAGCACACCAGTCCAAATTaGATTGATTCCATAGCTATT +
Preference number: 4 (lower is better)
Translates to: GERGLAQQKGWGLALKGEHTSPN*IDSIAI
Trigger: AATAGCTATGGAATCAATTCAATTTGGACTGGTGTG...CTCTCCTTTCAGGGCCAATCCCCAGCCCTTTTGTTGAGCCAGGCCTCTCTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR GCA 90 bp ATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTTTCTGAGCTCAGGTACTTCTaGCATGGCTGCTTCAGACAC +
Preference number: 4 (lower is better)
Translates to: MWERMTEGFLEPNVAVVSELRYF*HGCFRH
Trigger: GTGTCTGAAGCAGCCATGGCAGAAGTACCTGAGCTC...AGAAACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp CATCAGAATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTCAGAGGTCCAGGTCCTaGAAGGAGCACTTCATCTGT +
Preference number: 4 (lower is better)
Translates to: HQNVGANDRGFLRTKCGRQRSRS*KEHFIC
Trigger: ACAGATGAAGTGCTCCTTCCAGGACCTGGACCTCTG...ACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATTCTGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp CATCAGAATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTAAGTCAGTTATATCCTaGCCGCCTTTGGTCCCTCCC +
Preference number: 4 (lower is better)
Translates to: HQNVGANDRGFLRTKCGRKSVIS*PPLVPP
Trigger: GGGAGGGACCAAAGGCGGCCAGGATATAACTGACTT...ACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATTCTGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR TCA 90 bp AATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTTTCGGCATGTTTTCTGCTTaGGAGGTGCTGATGTACCAG +
Preference number: 4 (lower is better)
Translates to: NVGANDRGFLRTKCGRGFGMFSA*EVLMYQ
Trigger: CTGGTACATCAGCACCTCTCAAGCAGAAAACATGCC...GAAACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR TCA 90 bp GTTCCCTTTCTGCCAGCCCTAGGGATTGAGTCCACATTCAGCACAGGACTCTCTACACAAATTGCATGGTaGAGTCAGTTATATCCTGGC +
Preference number: 4 (lower is better)
Translates to: VPFLPALGIESTFSTGLSTQIAW*SQLYPG
Trigger: GCCAGGATATAACTGACTTCACCATGCAATTTGTGT...AGAGAGTCCTGTGCTGAATGTGGACTCAATCCCTAGGGCTGGCAGAAAGGGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR GCA 90 bp AATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTTTCGAGAACACCACTTGTTaGTCCATATCCTGTCCCTGG +
Preference number: 4 (lower is better)
Translates to: NVGANDRGFLRTKCGRGFENTTC*SISCPW
Trigger: CCAGGGACAGGATATGGAGCAACAAGTGGTGTTCTC...GAAACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp CATCAGAATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTCAGGTACTTCTGCCATaGCTGCTTCAGACACTTGAG +
Preference number: 4 (lower is better)
Translates to: HQNVGANDRGFLRTKCGRQVLLP*LLQTLE
Trigger: CTCAAGTGTCTGAAGCAGCCATGGCAGAAGTACCTG...ACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATTCTGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp CATCAGAATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTTCCATATCCTGTCCCTaGAGGTGGAGAGCTTTCAGT +
Preference number: 4 (lower is better)
Translates to: HQNVGANDRGFLRTKCGRSISCP*RWRAFS
Trigger: ACTGAAAGCTCTCCACCTCCAGGGACAGGATATGGA...ACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATTCTGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp GTTCCCTTTCTGCCAGCCCTAGGGATTGAGTCCACATTCAGCACAGGACTCTCTCTTGTACAAAGGACATaGAGAACACCACTTGTTGCT +
Preference number: 4 (lower is better)
Translates to: VPFLPALGIESTFSTGLSLVQRT*RTPLVA
Trigger: AGCAACAAGTGGTGTTCTCCATGTCCTTTGTACAAG...AGAGAGTCCTGTGCTGAATGTGGACTCAATCCCTAGGGCTGGCAGAAAGGGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp GTTCCCTTTCTGCCAGCCCTAGGGATTGAGTCCACATTCAGCACAGGACTCTCTTCTCCAGCTGTAGAGTaGGCTTATCATCTTTCAACA +
Preference number: 4 (lower is better)
Translates to: VPFLPALGIESTFSTGLSSPAVE*AYHLST
Trigger: TGTTGAAAGATGATAAGCCCACTCTACAGCTGGAGA...AGAGAGTCCTGTGCTGAATGTGGACTCAATCCCTAGGGCTGGCAGAAAGGGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp AGGCTCTTTTACAGACACTGCTACTTCTTGCCCCCTTTGAATAAATTAGACCAATATCCTGGCCGCCTTTaGTCCCTCCCAGGAAGACGG +
Preference number: 4 (lower is better)
Translates to: RLFYRHCYFLPPLNKLDQYPGRL*SLPGRR
Trigger: CCGTCTTCCTGGGAGGGACCAAAGGCGGCCAGGATA...TTGGTCTAATTTATTCAAAGGGGGCAAGAAGTAGCAGTGTCTGTAAAAGAGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR GCA 90 bp GTTCCCTTTCTGCCAGCCCTAGGGATTGAGTCCACATTCAGCACAGGACTCTCTACAAGTCATCCTCATTaGCACTGTAATAAGCCATCA +
Preference number: 4 (lower is better)
Translates to: VPFLPALGIESTFSTGLSTSHPH*HCNKPS
Trigger: TGATGGCTTATTACAGTGGCAATGAGGATGACTTGT...AGAGAGTCCTGTGCTGAATGTGGACTCAATCCCTAGGGCTGGCAGAAAGGGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR GCA 90 bp AATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTTTCGACGGGCATGTTTTCTaGTTGAGAGGTGCTGATGTA +
Preference number: 4 (lower is better)
Translates to: NVGANDRGFLRTKCGRGFDGHVF*LRGADV
Trigger: TACATCAGCACCTCTCAAGCAGAAAACATGCCCGTC...GAAACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp ATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTTTCTTCCTGTCCCTGGAGGTaGAGAGCTTTCAGTTCATAT +
Preference number: 4 (lower is better)
Translates to: MWERMTEGFLEPNVAVVSSCPWR*RAFSSY
Trigger: ATATGAACTGAAAGCTCTCCACCTCCAGGGACAGGA...AGAAACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp AATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTTTCCAGGCAGTTGGGCATTaGTGTAGACAACAGGAAAGT +
Preference number: 4 (lower is better)
Translates to: NVGANDRGFLRTKCGRGFQAVGH*CRQQES
Trigger: ACTTTCCTGTTGTCTACACCAATGCCCAACTGCCTG...GAAACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR TCA 90 bp AGGCTCTTTTACAGACACTGCTACTTCTTGCCCCCTTTGAATAAATTAGACCAAGCTGACTGTCCTGGCTaGTGGACAGGAGATCCTCTT +
Preference number: 4 (lower is better)
Translates to: RLFYRHCYFLPPLNKLDQADCPG*WTGDPL
Trigger: AAGAGGATCTCCTGTCCATCAGCCAGGACAGTCAGC...TTGGTCTAATTTATTCAAAGGGGGCAAGAAGTAGCAGTGTCTGTAAAAGAGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR TCA 90 bp AGGCTCTTTTACAGACACTGCTACTTCTTGCCCCCTTTGAATAAATTAGACCAACTGAAAGGAGAGAGCTaGCTGTCCTGGCTGATGGAC +
Preference number: 4 (lower is better)
Translates to: RLFYRHCYFLPPLNKLDQLKGES*LSWLMD
Trigger: GTCCATCAGCCAGGACAGTCAGCTCTCTCCTTTCAG...TTGGTCTAATTTATTCAAAGGGGGCAAGAAGTAGCAGTGTCTGTAAAAGAGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR GCA 90 bp AGGCTCTTTTACAGACACTGCTACTTCTTGCCCCCTTTGAATAAATTAGACCAAGTGAGTCCCGGAGCGTaGAGTTCAGTGATCGTACAG +
Preference number: 4 (lower is better)
Translates to: RLFYRHCYFLPPLNKLDQVSPGA*SSVIVQ
Trigger: CTGTACGATCACTGAACTGCACGCTCCGGGACTCAC...TTGGTCTAATTTATTCAAAGGGGGCAAGAAGTAGCAGTGTCTGTAAAAGAGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR GCA 90 bp ATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTTTCTCTCTTTTACAGACACTaGTACTTCTTGCCCCCTTTG +
Preference number: 4 (lower is better)
Translates to: MWERMTEGFLEPNVAVVSLFYRH*YFLPPL
Trigger: CAAAGGGGGCAAGAAGTAGCAGTGTCTGTAAAAGAG...AGAAACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp AGGCTCTTTTACAGACACTGCTACTTCTTGCCCCCTTTGAATAAATTAGACCAATCCTCAGCTTGTCCATaGCCACAACAACTGACGCGG +
Preference number: 4 (lower is better)
Translates to: RLFYRHCYFLPPLNKLDQSSACP*PQQLTR
Trigger: CCGCGTCAGTTGTTGTGGCCATGGACAAGCTGAGGA...TTGGTCTAATTTATTCAAAGGGGGCAAGAAGTAGCAGTGTCTGTAAAAGAGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR TCA 90 bp ATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTTTCTCAGACACTTGAGCAATaGAGATTGGCTGAAGAGAAT +
Preference number: 4 (lower is better)
Translates to: MWERMTEGFLEPNVAVVSQTLEQ*RLAEEN
Trigger: ATTCTCTTCAGCCAATCTTCATTGCTCAAGTGTCTG...AGAAACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp AGGCTCTTTTACAGACACTGCTACTTCTTGCCCCCTTTGAATAAATTAGACCAAGCTCAACAAAAGGGCTaGGGATTGGCCCTGAAAGGA +
Preference number: 4 (lower is better)
Translates to: RLFYRHCYFLPPLNKLDQAQQKG*GLALKG
Trigger: TCCTTTCAGGGCCAATCCCCAGCCCTTTTGTTGAGC...TTGGTCTAATTTATTCAAAGGGGGCAAGAAGTAGCAGTGTCTGTAAAAGAGCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp AGGCTCTTTTACAGACACTGCTACTTCTTGCCCCCTTTGAATAAATTAGACCAAAACCAAATGTGGCCGTaGTTTCTGTCAGGCGGGCTT +
Preference number: 4 (lower is better)
Translates to: RLFYRHCYFLPPLNKLDQNQMWP*FLSGGL
Trigger: AAGCCCGCCTGACAGAAACCACGGCCACATTTGGTT...TTGGTCTAATTTATTCAAAGGGGGCAAGAAGTAGCAGTGTCTGTAAAAGAGCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CCA 90 bp AGGCTCTTTTACAGACACTGCTACTTCTTGCCCCCTTTGAATAAATTAGACCAAAGCTTTCAGTTCATATaGACCAGACATCACCAAGCT +
Preference number: 4 (lower is better)
Translates to: RLFYRHCYFLPPLNKLDQSFQFI*TRHHQA
Trigger: AGCTTGGTGATGTCTGGTCCATATGAACTGAAAGCT...TTGGTCTAATTTATTCAAAGGGGGCAAGAAGTAGCAGTGTCTGTAAAAGAGCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS TCA 90 bp GCAGGGAACCAGCATCTTCCTCAGCTTGTCCATGGCCACAACAACTaGCGCGGCCTGCCTGAAGCCCTTGCTGTAGTGGTGGTCGGAGAT +
Preference number: 5 (lower is better)
Translates to: AGNQHLPQLVHGHNN*RGLPEALAVVVVGD
Trigger: ATCTCCGACCACCACTACAGCAAGGGCTTCAGGCAGGCCGCGTCAGTTGTTGTGGCCATGGACAAGCTGAGGAAGATGCTGGTTCCCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000263341.7
ENST00000416750.1
ENST00000418817.5
ENST00000432018.5
ENST00000487639.1
ENST00000491056.5
ENST00000496280.5
CDS TCA 90 bp TCTTCCTCAGCTTGTCCATGGCCACAACAACTGACGCGGCCTGCCTaGAGCCCTTGCTGTAGTGGTGGTCGGAGATTCGTAGCTGGATGC +
Preference number: 5 (lower is better)
Translates to: SSSACPWPQQLTRPA*SPCCSGGRRFVAGC
Trigger: GCATCCAGCTACGAATCTCCGACCACCACTACAGCAAGGGCTTCAGGCAGGCCGCGTCAGTTGTTGTGGCCATGGACAAGCTGAGGAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000263341.7
ENST00000416750.1
ENST00000418817.5
ENST00000432018.5
ENST00000487639.1
ENST00000491056.5
ENST00000496280.5
CDS GCA 90 bp ATCCTGGCCGCCTTTGGTCCCTCCCAGGAAGACGGGCATGTTTTCTaGTTGAGAGGTGCTGATGTACCAGTTGGGGAACTGGGCAGACTC +
Preference number: 5 (lower is better)
Translates to: ILAAFGPSQEDGHVF*LRGADVPVGELGRL
Trigger: GAGTCTGCCCAGTTCCCCAACTGGTACATCAGCACCTCTCAAGCAGAAAACATGCCCGTCTTCCTGGGAGGGACCAAAGGCGGCCAGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000263341.7
ENST00000491056.5
CDS-3UTR CAA 90 bp GTTCCCTTTCTGCCAGCCCTAGGGATTGAGTCCACATTCAGCACAGGACTCTCTATATCCTGGCCGCCTTaGGTCCCTCCCAGGAAGACG +
Preference number: 5 (lower is better)
Translates to: VPFLPALGIESTFSTGLSISWPP*VPPRKT
Trigger: CGTCTTCCTGGGAGGGACCAAAGGCGGCCAGGATAT...AGAGAGTCCTGTGCTGAATGTGGACTCAATCCCTAGGGCTGGCAGAAAGGGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS TCA 90 bp TGGCCGCCTTTGGTCCCTCCCAGGAAGACGGGCATGTTTTCTGCTTaGGAGGTGCTGATGTACCAGTTGGGGAACTGGGCAGACTCAAAT +
Preference number: 5 (lower is better)
Translates to: WPPLVPPRKTGMFSA*EVLMYQLGNWADSN
Trigger: ATTTGAGTCTGCCCAGTTCCCCAACTGGTACATCAGCACCTCTCAAGCAGAAAACATGCCCGTCTTCCTGGGAGGGACCAAAGGCGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000263341.7
ENST00000491056.5
CDS CCA 90 bp GATGAAGGGAAAGAAGGTGCTCAGGTCATTCTCCTGGAAGGTCTGTaGGCAGGGAACCAGCATCTTCCTCAGCTTGTCCATGGCCACAAC +
Preference number: 5 (lower is better)
Translates to: DEGKEGAQVILLEGL*AGNQHLPQLVHGHN
Trigger: GTTGTGGCCATGGACAAGCTGAGGAAGATGCTGGTTCCCTGCCCACAGACCTTCCAGGAGAATGACCTGAGCACCTTCTTTCCCTTCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000263341.7
ENST00000416750.1
ENST00000418817.5
ENST00000432018.5
ENST00000487639.1
ENST00000491056.5
ENST00000496280.5
CDS CCA 90 bp CCACCACCAACGTTAGTGAGTGACTGTGGTGATATGATGACCAAGTaGCCAGGTCAGCAAGTGGTGCAGCCTGTGTCTCACTGGAAGAGG +
Preference number: 5 (lower is better)
Translates to: PPPTLVSDCGDMMTK*PGQQVVQPVSHWKR
Trigger: CCTCTTCCAGTGAGACACAGGCTGCACCACTTGCTGACCTGGCCACTTGGTCATCATATCACCACAGTCACTCACTAACGTTGGTGGTGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477398.1
CDS-3UTR CAA 90 bp GTTCCCTTTCTGCCAGCCCTAGGGATTGAGTCCACATTCAGCACAGGACTCTCTGTGCTGATGTACCAGTaGGGGAACTGGGCAGACTCA +
Preference number: 5 (lower is better)
Translates to: VPFLPALGIESTFSTGLSVLMYQ*GNWADS
Trigger: TGAGTCTGCCCAGTTCCCCAACTGGTACATCAGCAC...AGAGAGTCCTGTGCTGAATGTGGACTCAATCCCTAGGGCTGGCAGAAAGGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CAA 90 bp GGTGAGAGAGGCCTGGCTCAACAAAAGGGCTGGGGATTGGCCCTGAAAGGAGAGAAGGCCACAGGTATTTaGTCATTACTTTCTTCTCCT +
Preference number: 5 (lower is better)
Translates to: GERGLAQQKGWGLALKGEKATGI*SLLSSP
Trigger: AGGAGAAGAAAGTAATGACAAAATACCTGTGGCCTT...CTCTCCTTTCAGGGCCAATCCCCAGCCCTTTTGTTGAGCCAGGCCTCTCTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS TCA 90 bp GACTCTCTGGGTACAGCTCTCTTTAGGAAGACACAAATTGCATGGTaGAGTCAGTTATATCCTGGCCGCCTTTGGTCCCTCCCAGGAAGA +
Preference number: 5 (lower is better)
Translates to: DSLGTALFRKTQIAW*SQLYPGRLWSLPGR
Trigger: TCTTCCTGGGAGGGACCAAAGGCGGCCAGGATATAACTGACTTCACCATGCAATTTGTGTCTTCCTAAAGAGAGCTGTACCCAGAGAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CAA 90 bp AATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTTTCGGAGAACACCACTTGTaGCTCCATATCCTGTCCCTG +
Preference number: 5 (lower is better)
Translates to: NVGANDRGFLRTKCGRGFGEHHL*LHILSL
Trigger: CAGGGACAGGATATGGAGCAACAAGTGGTGTTCTCC...GAAACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CAA 90 bp GGTGAGAGAGGCCTGGCTCAACAAAAGGGCTGGGGATTGGCCCTGAAAGGAGAGTTAGGAAGACACAAATaGCATGGTGAAGTCAGTTAT +
Preference number: 5 (lower is better)
Translates to: GERGLAQQKGWGLALKGELGRHK*HGEVSY
Trigger: ATAACTGACTTCACCATGCAATTTGTGTCTTCCTAA...CTCTCCTTTCAGGGCCAATCCCCAGCCCTTTTGTTGAGCCAGGCCTCTCTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS TCA 90 bp GTGGAGATCTACTGCCTGCTCTTGGCTAACTACCTTCTTCAAAGATaGAGGGAAAGAAGGTGCTCAGGTCATTCTCCTGGAAGGTCTGTG +
Preference number: 5 (lower is better)
Translates to: VEIYCLLLANYLLQR*RERRCSGHSPGRSV
Trigger: CACAGACCTTCCAGGAGAATGACCTGAGCACCTTCTTTCCCTTCATCTTTGAAGAAGGTAGTTAGCCAAGAGCAGGCAGTAGATCTCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000491056.5
ENST00000496280.5
CDS CCA 90 bp ACAAAGGACATGGAGAACACCACTTGTTGCTCCATATCCTGTCCCTaGAGGTGGAGAGCTTTCAGTTCATATGGACCAGACATCACCAAG +
Preference number: 5 (lower is better)
Translates to: TKDMENTTCCSISCP*RWRAFSSYGPDITK
Trigger: CTTGGTGATGTCTGGTCCATATGAACTGAAAGCTCTCCACCTCCAGGGACAGGATATGGAGCAACAAGTGGTGTTCTCCATGTCCTTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000263341.7
ENST00000487639.1
ENST00000491056.5
CDS CCA 90 bp AAATGGGAAACATTATCACTACTCCTCCCCTGTCACCACCAAGTGTaGCCACCACCACCAACGTTAGTGAGTGACTGTGGTGATATGATG +
Preference number: 5 (lower is better)
Translates to: KWETLSLLLPCHHQV*PPPPTLVSDCGDMM
Trigger: CATCATATCACCACAGTCACTCACTAACGTTGGTGGTGGTGGCCACACTTGGTGGTGACAGGGGAGGAGTAGTGATAATGTTTCCCATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000477398.1
CDS-3UTR CAA 90 bp AATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTTTCCATGGAGAACACCACTaGTTGCTCCATATCCTGTCC +
Preference number: 5 (lower is better)
Translates to: NVGANDRGFLRTKCGRGFHGEHH*LLHILS
Trigger: GGACAGGATATGGAGCAACAAGTGGTGTTCTCCATG...GAAACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CAA 90 bp AATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTTTCTACAGATTCTTTTCCTaGAGGCCCAAGGCCACAGGT +
Preference number: 5 (lower is better)
Translates to: NVGANDRGFLRTKCGRGFYRFFS*RPKATG
Trigger: ACCTGTGGCCTTGGGCCTCAAGGAAAAGAATCTGTA...GAAACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS CCA 90 bp GACATGGAGAACACCACTTGTTGCTCCATATCCTGTCCCTGGAGGTaGAGAGCTTTCAGTTCATATGGACCAGACATCACCAAGCTTTTT +
Preference number: 5 (lower is better)
Translates to: DMENTTCCSISCPWR*RAFSSYGPDITKLF
Trigger: AAAAAGCTTGGTGATGTCTGGTCCATATGAACTGAAAGCTCTCCACCTCCAGGGACAGGATATGGAGCAACAAGTGGTGTTCTCCATGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000263341.7
ENST00000487639.1
ENST00000491056.5
CDS-3UTR CAA 90 bp AGGCTCTTTTACAGACACTGCTACTTCTTGCCCCCTTTGAATAAATTAGACCAAGCAGCCTGTTGTGCCTaGTGCCTCGAAGAGGTTTGG +
Preference number: 5 (lower is better)
Translates to: RLFYRHCYFLPPLNKLDQAACCA*CLEEVW
Trigger: CCAAACCTCTTCGAGGCACAAGGCACAACAGGCTGC...TTGGTCTAATTTATTCAAAGGGGGCAAGAAGTAGCAGTGTCTGTAAAAGAGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS TCA 90 bp CCGAGTCATAAGCATTATATTACACCTGGCATTTTTGCAAAAAGCTaGGAGAGGGAGGCAGAGAGGGAAGGAGAGGGAGAGACAGAGAAA +
Preference number: 5 (lower is better)
Translates to: PSHKHYITPGIFAKS*EREAEREGEGETEK
Trigger: TTTCTCTGTCTCTCCCTCTCCTTCCCTCTCTGCCTCCCTCTCTCAGCTTTTTGCAAAAATGCCAGGTGTAATATAATGCTTATGACTCGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000416750.1
ENST00000491056.5
CDS-3UTR CAA 90 bp CAGAATGTGGGAGCGAATGACAGAGGGTTTCTTAGAACCAAATGTGGCCGTGGTAGACACTGCTACTTCTaGCCCCCTTTGAATAAATTA +
Preference number: 5 (lower is better)
Translates to: QNVGANDRGFLRTKCGRGRHCYF*PPLNKL
Trigger: TAATTTATTCAAAGGGGGCAAGAAGTAGCAGTGTCT...ACCACGGCCACATTTGGTTCTAAGAAACCCTCTGTCATTCGCTCCCACATTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS CCA 90 bp AGAAGGGCTTCATTCCATAGCATTCACTTACCTCCAGCTGTAGAGTaGGCTTATCATCTTTCAACACGCAGGACAGGTACAGATTCTTTT +
Preference number: 5 (lower is better)
Translates to: RRASFHSIHLPPAVE*AYHLSTRRTGTDSF
Trigger: AAAAGAATCTGTACCTGTCCTGCGTGTTGAAAGATGATAAGCCCACTCTACAGCTGGAGGTAAGTGAATGCTATGGAATGAAGCCCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000487639.1
CDS-3UTR CAA 90 bp AGGCTCTTTTACAGACACTGCTACTTCTTGCCCCCTTTGAATAAATTAGACCAAGGCTGCTTCAGACACTaGAGCAATGAAGATTGGCTG +
Preference number: 5 (lower is better)
Translates to: RLFYRHCYFLPPLNKLDQGCFRH*SNEDWL
Trigger: CAGCCAATCTTCATTGCTCAAGTGTCTGAAGCAGCC...TTGGTCTAATTTATTCAAAGGGGGCAAGAAGTAGCAGTGTCTGTAAAAGAGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS-3UTR CAA 90 bp AGGCTCTTTTACAGACACTGCTACTTCTTGCCCCCTTTGAATAAATTAGACCAAAGCATCTTCCTCAGCTaGTCCATGGCCACAACAACT +
Preference number: 5 (lower is better)
Translates to: RLFYRHCYFLPPLNKLDQSIFLS*SMATTT
Trigger: AGTTGTTGTGGCCATGGACAAGCTGAGGAAGATGCT...TTGGTCTAATTTATTCAAAGGGGGCAAGAAGTAGCAGTGTCTGTAAAAGAGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS TCA 90 bp GCTTATCATCTTTCAACACGCAGGACAGGTACAGATTCTTTTCCTTaGGGCCCAAGGCCACAGGTATTTTGTCATTACTTTCTTCTCCTT +
Preference number: 5 (lower is better)
Translates to: AYHLSTRRTGTDSFP*GPRPQVFCHYFLLL
Trigger: AAGGAGAAGAAAGTAATGACAAAATACCTGTGGCCTTGGGCCTCAAGGAAAAGAATCTGTACCTGTCCTGCGTGTTGAAAGATGATAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000263341.7
ENST00000487639.1
ENST00000491056.5
CDS TCA 90 bp AAGGATAATCAAATTTATGTTGAAGACTTGGTTGTCTTCCTACTATaGAATGGGAAACATTATCACTACTCCTCCCCTGTCACCACCAAG +
Preference number: 5 (lower is better)
Translates to: KDNQIYVEDLVVFLL*NGKHYHYSSPVTTK
Trigger: CTTGGTGGTGACAGGGGAGGAGTAGTGATAATGTTTCCCATTTCATAGTAGGAAGACAACCAAGTCTTCAACATAAATTTGATTATCCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000477398.1
CDS GCA 72 bp CCTTGCTGTAGTGGTGGTCGGAGATTCGTAGCTGGATaGCGCCATCCAGAGGGCAGAGGTCCAGGTCCTGGA +
Preference number: 6 (lower is better)
Translates to: PCCSGGRRFVAG*RHPEGRGPGPG
Trigger: TCCAGGACCTGGACCTCTGCCCTCTGGATGGCGGCATCCAGCTACGAATCTCCGACCACCACTACAGCAAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000263341.7
ENST00000416750.1
ENST00000418817.5
ENST00000432018.5
ENST00000487639.1
ENST00000491056.5
ENST00000496280.5
CDS CAA 72 bp AAGGTCTGTGGGCAGGGAACCAGCATCTTCCTCAGCTaGTCCATGGCCACAACAACTGACGCGGCCTGCCTG +
Preference number: 6 (lower is better)
Translates to: KVCGQGTSIFLS*SMATTTDAACL
Trigger: CAGGCAGGCCGCGTCAGTTGTTGTGGCCATGGACAAGCTGAGGAAGATGCTGGTTCCCTGCCCACAGACCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000263341.7
ENST00000416750.1
ENST00000418817.5
ENST00000432018.5
ENST00000487639.1
ENST00000491056.5
ENST00000496280.5
CDS TCA 72 bp GCTTGTCCATGGCCACAACAACTGACGCGGCCTGCCTaGAGCCCTTGCTGTAGTGGTGGTCGGAGATTCGTA +
Preference number: 6 (lower is better)
Translates to: ACPWPQQLTRPA*SPCCSGGRRFV
Trigger: TACGAATCTCCGACCACCACTACAGCAAGGGCTTCAGGCAGGCCGCGTCAGTTGTTGTGGCCATGGACAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000263341.7
ENST00000416750.1
ENST00000418817.5
ENST00000432018.5
ENST00000487639.1
ENST00000491056.5
ENST00000496280.5
CDS CAA 90 bp CTGGCCGCCTTTGGTCCCTCCCAGGAAGACGGGCATGTTTTCTGCTaGAGAGGTGCTGATGTACCAGTTGGGGAACTGGGCAGACTCAAA +
Preference number: 6 (lower is better)
Translates to: LAAFGPSQEDGHVFC*RGADVPVGELGRLK
Trigger: TTTGAGTCTGCCCAGTTCCCCAACTGGTACATCAGCACCTCTCAAGCAGAAAACATGCCCGTCTTCCTGGGAGGGACCAAAGGCGGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000263341.7
ENST00000491056.5
CDS TCA 72 bp TTGGTCCCTCCCAGGAAGACGGGCATGTTTTCTGCTTaGGAGGTGCTGATGTACCAGTTGGGGAACTGGGCA +
Preference number: 6 (lower is better)
Translates to: LVPPRKTGMFSA*EVLMYQLGNWA
Trigger: TGCCCAGTTCCCCAACTGGTACATCAGCACCTCTCAAGCAGAAAACATGCCCGTCTTCCTGGGAGGGACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000263341.7
ENST00000491056.5
CDS GCA 72 bp GCCTTTGGTCCCTCCCAGGAAGACGGGCATGTTTTCTaGTTGAGAGGTGCTGATGTACCAGTTGGGGAACTG +
Preference number: 6 (lower is better)
Translates to: AFGPSQEDGHVF*LRGADVPVGEL
Trigger: CAGTTCCCCAACTGGTACATCAGCACCTCTCAAGCAGAAAACATGCCCGTCTTCCTGGGAGGGACCAAAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000263341.7
ENST00000491056.5
CDS GCA 72 bp GCTGAAGAGAATCCCAGAGCAGCCTGTTGTGCCTTGTaGCTCGAAGAGGTTTGGTATCTGCCAGTTTCTCCC +
Preference number: 6 (lower is better)
Translates to: AEENPRAACCAL*LEEVWYLPVSP
Trigger: GGGAGAAACTGGCAGATACCAAACCTCTTCGAGGCACAAGGCACAACAGGCTGCTCTGGGATTCTCTTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418817.5
CDS CCA 72 bp AAAGAAGGTGCTCAGGTCATTCTCCTGGAAGGTCTGTaGGCAGGGAACCAGCATCTTCCTCAGCTTGTCCAT +
Preference number: 6 (lower is better)
Translates to: KEGAQVILLEGL*AGNQHLPQLVH
Trigger: ATGGACAAGCTGAGGAAGATGCTGGTTCCCTGCCCACAGACCTTCCAGGAGAATGACCTGAGCACCTTCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000263341.7
ENST00000416750.1
ENST00000418817.5
ENST00000432018.5
ENST00000487639.1
ENST00000491056.5
ENST00000496280.5
CDS CCA 72 bp GAAGACACAAATTGCATGGTGAAGTCAGTTATATCCTaGCCGCCTTTGGTCCCTCCCAGGAAGACGGGCATG +
Preference number: 6 (lower is better)
Translates to: EDTNCMVKSVIS*PPLVPPRKTGM
Trigger: CATGCCCGTCTTCCTGGGAGGGACCAAAGGCGGCCAGGATATAACTGACTTCACCATGCAATTTGTGTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000263341.7
ENST00000491056.5
CDS CCA 72 bp ACGTTAGTGAGTGACTGTGGTGATATGATGACCAAGTaGCCAGGTCAGCAAGTGGTGCAGCCTGTGTCTCAC +
Preference number: 6 (lower is better)
Translates to: TLVSDCGDMMTK*PGQQVVQPVSH
Trigger: GTGAGACACAGGCTGCACCACTTGCTGACCTGGCCACTTGGTCATCATATCACCACAGTCACTCACTAACGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477398.1
CDS CAA 90 bp CAGCACAGGACTCTCTGGGTACAGCTCTCTTTAGGAAGACACAAATaGCATGGTGAAGTCAGTTATATCCTGGCCGCCTTTGGTCCCTCC +
Preference number: 6 (lower is better)
Translates to: QHRTLWVQLSLGRHK*HGEVSYILAAFGPS
Trigger: GGAGGGACCAAAGGCGGCCAGGATATAACTGACTTCACCATGCAATTTGTGTCTTCCTAAAGAGAGCTGTACCCAGAGAGTCCTGTGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS CCA 72 bp TGCCATGGCTGCTTCAGACACTTGAGCAATGAAGATTaGCTGAAGAGAATCCCAGAGCAGCCTGTTGTGCCT +
Preference number: 6 (lower is better)
Translates to: CHGCFRHLSNED*LKRIPEQPVVP
Trigger: AGGCACAACAGGCTGCTCTGGGATTCTCTTCAGCCAATCTTCATTGCTCAAGTGTCTGAAGCAGCCATGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000263341.7
ENST00000477398.1
ENST00000496280.5
CDS CCA 72 bp AGAGCAGCCTGTTGTGCCTTGTGCCTCGAAGAGGTTTaGTATCTGCCAGTTTCTCCCTCGCTGTTTTTATGG +
Preference number: 6 (lower is better)
Translates to: RAACCALCLEEV*YLPVSPSLFLW
Trigger: CCATAAAAACAGCGAGGGAGAAACTGGCAGATACCAAACCTCTTCGAGGCACAAGGCACAACAGGCTGCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000418817.5
CDS CCA 72 bp CCATCATTTCACTGGCGAGCTCAGGTACTTCTGCCATaGCTGCTTCAGACACCTTTAGGGTGTCAGCTGTTA +
Preference number: 6 (lower is better)
Translates to: PSFHWRAQVLLP*LLQTPLGCQLL
Trigger: TAACAGCTGACACCCTAAAGGTGTCTGAAGCAGCCATGGCAGAAGTACCTGAGCTCGCCAGTGAAATGATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000416750.1
CDS CAA 72 bp AATTGCATGGTGAAGTCAGTTATATCCTGGCCGCCTTaGGTCCCTCCCAGGAAGACGGGCATGTTTTCTGCT +
Preference number: 6 (lower is better)
Translates to: NCMVKSVISWPP*VPPRKTGMFSA
Trigger: AGCAGAAAACATGCCCGTCTTCCTGGGAGGGACCAAAGGCGGCCAGGATATAACTGACTTCACCATGCAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000263341.7
ENST00000491056.5
CDS CAA 72 bp CAGAGCAGCCTGTTGTGCCTTGTGCCTCGAAGAGGTTaGGTATCTGCCAGTTTCTCCCTCGCTGTTTTTATG +
Preference number: 6 (lower is better)
Translates to: QSSLLCLVPRRG*VSASFSLAVFM
Trigger: CATAAAAACAGCGAGGGAGAAACTGGCAGATACCAAACCTCTTCGAGGCACAAGGCACAACAGGCTGCTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000418817.5
CDS CAA 72 bp TTGGCTGAAGAGAATCCCAGAGCAGCCTGTTGTGCCTaGTGCCTCGAAGAGGTTTGGTATCTGCCAGTTTCT +
Preference number: 6 (lower is better)
Translates to: LAEENPRAACCA*CLEEVWYLPVS
Trigger: AGAAACTGGCAGATACCAAACCTCTTCGAGGCACAAGGCACAACAGGCTGCTCTGGGATTCTCTTCAGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418817.5
CDS CCA 72 bp ATGGAGAACACCACTTGTTGCTCCATATCCTGTCCCTaGAGGTGGAGAGCTTTCAGTTCATATGGACCAGAC +
Preference number: 6 (lower is better)
Translates to: MENTTCCSISCP*RWRAFSSYGPD
Trigger: GTCTGGTCCATATGAACTGAAAGCTCTCCACCTCCAGGGACAGGATATGGAGCAACAAGTGGTGTTCTCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000263341.7
ENST00000487639.1
ENST00000491056.5
CDS CAA 72 bp ATACCATGGCATCAAAGTGGCCCAGAACTCCCTTCTTaGAGCTTTCCCTGTGTTAGAGCCCTTCCTTGGGTT +
Preference number: 6 (lower is better)
Translates to: IPWHQSGPELPS*SFPCVRALPWV
Trigger: AACCCAAGGAAGGGCTCTAACACAGGGAAAGCTCAAAGAAGGGAGTTCTGGGCCACTTTGATGCCATGGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477398.1
CDS GCA 72 bp ATAAGCCATCATTTCACTGGCGAGCTCAGGTACTTCTaGCATGGCTGCTTCAGACACCTAGTTGTAAGGAAG +
Preference number: 6 (lower is better)
Translates to: ISHHFTGELRYF*HGCFRHLVVRK
Trigger: CTTCCTTACAACTAGGTGTCTGAAGCAGCCATGGCAGAAGTACCTGAGCTCGCCAGTGAAATGATGGCTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418817.5
CDS GCA 72 bp ATAAGCCATCATTTCACTGGCGAGCTCAGGTACTTCTaGCATGGCTGCTTCAGACACCTGTGTAAAAAGGAG +
Preference number: 6 (lower is better)
Translates to: ISHHFTGELRYF*HGCFRHLCKKE
Trigger: CTCCTTTTTACACAGGTGTCTGAAGCAGCCATGGCAGAAGTACCTGAGCTCGCCAGTGAAATGATGGCTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000432018.5
ENST00000491056.5
CDS TCA 72 bp AAGCATTATATTACACCTGGCATTTTTGCAAAAAGCTaGGAGAGGGAGGCAGAGAGGGAAGGAGAGGGAGAG +
Preference number: 6 (lower is better)
Translates to: KHYITPGIFAKS*EREAEREGEGE
Trigger: CTCTCCCTCTCCTTCCCTCTCTGCCTCCCTCTCTCAGCTTTTTGCAAAAATGCCAGGTGTAATATAATGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000416750.1
ENST00000491056.5
CDS GCA 72 bp ATAAGCCATCATTTCACTGGCGAGCTCAGGTACTTCTaGCATGGCTGCTTCAGACACTTGAGCAATGAAGAT +
Preference number: 6 (lower is better)
Translates to: ISHHFTGELRYF*HGCFRHLSNED
Trigger: ATCTTCATTGCTCAAGTGTCTGAAGCAGCCATGGCAGAAGTACCTGAGCTCGCCAGTGAAATGATGGCTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000263341.7
ENST00000477398.1
ENST00000496280.5
CDS CAA 90 bp CAGAATATTTCCCGAGTCATAAGCATTATATTACACCTGGCATTTTaGCAAAAAGCTGAGAGAGGGAGGCAGAGAGGGAAGGAGAGGGAG +
Preference number: 6 (lower is better)
Translates to: QNISRVISIILHLAF*QKAERGRQRGKERE
Trigger: CTCCCTCTCCTTCCCTCTCTGCCTCCCTCTCTCAGCTTTTTGCAAAAATGCCAGGTGTAATATAATGCTTATGACTCGGGAAATATTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000416750.1
ENST00000491056.5
CDS CAA 72 bp ACTCTCTGGGTACAGCTCTCTTTAGGAAGACACAAATaGCATGGTGAAGTCAGTTATATCCTGGCCGCCTTT +
Preference number: 6 (lower is better)
Translates to: TLWVQLSLGRHK*HGEVSYILAAF
Trigger: AAAGGCGGCCAGGATATAACTGACTTCACCATGCAATTTGTGTCTTCCTAAAGAGAGCTGTACCCAGAGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000263341.7
CDS CAA 90 bp GGCTTATCATCTTTCAACACGCAGGACAGGTACAGATTCTTTTCCTaGAGGCCCAAGGCCACAGGTATTTTGTCATTACTTTCTTCTCCT +
Preference number: 6 (lower is better)
Translates to: GLSSFNTQDRYRFFS*RPKATGILSLLSSP
Trigger: AGGAGAAGAAAGTAATGACAAAATACCTGTGGCCTTGGGCCTCAAGGAAAAGAATCTGTACCTGTCCTGCGTGTTGAAAGATGATAAGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000263341.7
ENST00000487639.1
ENST00000491056.5
CDS CAA 90 bp TCTAGAGAAAAGCATTTGCTAAACCAAACCCCAACTAGCAATGTATaGGCTAGGAGAGCTGGAGCAGAGGCTTTGACACTAACCTTTAGG +
Preference number: 6 (lower is better)
Translates to: SREKHLLNQTPTSNV*ARRAGAEALTLTFR
Trigger: CCTAAAGGTTAGTGTCAAAGCCTCTGCTCCAGCTCTCCTAGCCAATACATTGCTAGTTGGGGTTTGGTTTAGCAAATGCTTTTCTCTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000491056.5
CDS TCA 72 bp CTTTCAACACGCAGGACAGGTACAGATTCTTTTCCTTaGGGCCCAAGGCCACAGGTATTTTGTCATTACTTT +
Preference number: 6 (lower is better)
Translates to: LSTRRTGTDSFP*GPRPQVFCHYF
Trigger: AAAGTAATGACAAAATACCTGTGGCCTTGGGCCTCAAGGAAAAGAATCTGTACCTGTCCTGCGTGTTGAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000263341.7
ENST00000487639.1
ENST00000491056.5
CDS CAA 72 bp TCTTTCAACACGCAGGACAGGTACAGATTCTTTTCCTaGAGGCCCAAGGCCACAGGTATTTTGTCATTACTT +
Preference number: 6 (lower is better)
Translates to: SFNTQDRYRFFS*RPKATGILSLL
Trigger: AAGTAATGACAAAATACCTGTGGCCTTGGGCCTCAAGGAAAAGAATCTGTACCTGTCCTGCGTGTTGAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000263341.7
ENST00000487639.1
ENST00000491056.5
CDS CAA 90 bp AATGAATGTGTGAAAGAGAAGTCCTTTGGGTCTAGAGAAAAGCATTaGCTAAACCAAACCCCAACTAGCAATGTATTGGCTAGGAGAGCT +
Preference number: 6 (lower is better)
Translates to: NECVKEKSFGSREKH*LNQTPTSNVLARRA
Trigger: AGCTCTCCTAGCCAATACATTGCTAGTTGGGGTTTGGTTTAGCAAATGCTTTTCTCTAGACCCAAAGGACTTCTCTTTCACACATTCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000491056.5
CDS CAA 90 bp TCAAGATCTTCTTTAAGAATAGTTTCCACTAAAGAGATGATTGCTTaGGTTTCCAGCCTTCTTTGTTTTGTCTCCCCGCTGGGCCTTCTA +
Preference number: 6 (lower is better)
Translates to: SRSSLRIVSTKEMIA*VSSLLCFVSPLGLL
Trigger: TAGAAGGCCCAGCGGGGAGACAAAACAAAGAAGGCTGGAAACCAAAGCAATCATCTCTTTAGTGGAAACTATTCTTAAAGAAGATCTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000491056.5
ENST00000496280.5
CDS TCA 72 bp CAAATTTATGTTGAAGACTTGGTTGTCTTCCTACTATaGAATGGGAAACATTATCACTACTCCTCCCCTGTC +
Preference number: 6 (lower is better)
Translates to: QIYVEDLVVFLL*NGKHYHYSSPV
Trigger: GACAGGGGAGGAGTAGTGATAATGTTTCCCATTTCATAGTAGGAAGACAACCAAGTCTTCAACATAAATTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000477398.1