Pregenerated sensors for IK (Homo sapiens)
Ensembl gene IDs: ENSG00000113141Ensembl transcript IDs: ENST00000503332.5, ENST00000513256.5, ENST00000515592.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | CGGTACTTCTCTGCTAGCTCTCTCTCTCTCTCAATTTCTTGTTGGCGTAGCTTGCCTCATTGTACTCCCTaGGCATCTCATGGTGACGTG | + |
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Preference number: 3 (lower is better) Translates to: RYFSASSLSLSISCWRSLPHCTP*ASHGDV Trigger: CACGTCACCATGAGATGCCAAGGGAGTACAATGAGG...CAAGCTACGCCAACAAGAAATTGAGAGAGAGAGAGAGCTAGCAGAGAAGTACCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000503332.5 |
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| CDS-3UTR TCA 90 bp | CGGTACTTCTCTGCTAGCTCTCTCTCTCTCTCAATTTCTTGTTGGCGTAGCTTGTTCATTGGTGAGTTTTaGTCTGTAATCCCAGCTACT | + |
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Preference number: 4 (lower is better) Translates to: RYFSASSLSLSISCWRSLFIGEF*SVIPAT Trigger: AGTAGCTGGGATTACAGATCAAAACTCACCAATGAA...CAAGCTACGCCAACAAGAAATTGAGAGAGAGAGAGAGCTAGCAGAGAAGTACCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000503332.5 |
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| CDS CCA 90 bp | TCACCCATCCTAATCCGCGAATGCTCCGATGTGCAGCCCAAGCTCTaGGCCCGCTACGGTGAGTGCGGGACGCCAGGGGTCTGGGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: SPILIRECSDVQPKL*ARYGECGTPGVWGS Trigger: GGAGCCCCAGACCCCTGGCGTCCCGCACTCACCGTAGCGGGCCCAGAGCTTGGGCTGCACATCGGAGCATTCGCGGATTAGGATGGGTGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000513256.5 |
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| CDS CCA 90 bp | GCAAGAGTTAAACAGATGTTGCATACCCTGACCCTATGCTTCATCTaGAAACCTACCCGACTAAGAGGTTATCTGCATAGGAATGACCAC | + |
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Preference number: 5 (lower is better) Translates to: ARVKQMLHTLTLCFI*KPTRLRGYLHRNDH Trigger: GTGGTCATTCCTATGCAGATAACCTCTTAGTCGGGTAGGTTTCCAGATGAAGCATAGGGTCAGGGTATGCAACATCTGTTTAACTCTTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515592.1 |
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| CDS TCA 90 bp | GGATTAAACAAGGCTCCAAGATTAAACCATGCTATTTCAATACAGTaGACTCAGGGGAAGAACACAGACTTCTTCACTATTAGTGGCATT | + |
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Preference number: 5 (lower is better) Translates to: GLNKAPRLNHAISIQ*TQGKNTDFFTISGI Trigger: AATGCCACTAATAGTGAAGAAGTCTGTGTTCTTCCCCTGAGTTCACTGTATTGAAATAGCATGGTTTAATCTTGGAGCCTTGTTTAATCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515592.1 |
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| CDS CCA 72 bp | CTAATCCGCGAATGCTCCGATGTGCAGCCCAAGCTCTaGGCCCGCTACGGTGAGTGCGGGACGCCAGGGGTC | + |
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Preference number: 6 (lower is better) Translates to: LIRECSDVQPKL*ARYGECGTPGV Trigger: GACCCCTGGCGTCCCGCACTCACCGTAGCGGGCCCAGAGCTTGGGCTGCACATCGGAGCATTCGCGGATTAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513256.5 |
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| CDS GCA 72 bp | GGGTTGGAGAACGGCTCACCCATCCTAATCCGCGAATaGTCCGATGTGCAGCCCAAGCTCTGGGCCCGCTAC | + |
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Preference number: 6 (lower is better) Translates to: GLENGSPILIRE*SDVQPKLWARY Trigger: GTAGCGGGCCCAGAGCTTGGGCTGCACATCGGAGCATTCGCGGATTAGGATGGGTGAGCCGTTCTCCAACCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000513256.5 |
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| CDS CAA 90 bp | GTAGCCCTGGGACTTAGCGAATCAAATTTCCATTTCACCCCCAACTaGTTTCCCAATCATCCCAGCCTCCCTTCCTTAACCAGGTTTCAC | + |
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Preference number: 6 (lower is better) Translates to: VALGLSESNFHFTPN*FPNHPSLPSLTRFH Trigger: GTGAAACCTGGTTAAGGAAGGGAGGCTGGGATGATTGGGAAACAAGTTGGGGGTGAAATGGAAATTTGATTCGCTAAGTCCCAGGGCTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000515592.1 |
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| CDS CAA 72 bp | GGACTTAGCGAATCAAATTTCCATTTCACCCCCAACTaGTTTCCCAATCATCCCAGCCTCCCTTCCTTAACC | + |
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Preference number: 6 (lower is better) Translates to: GLSESNFHFTPN*FPNHPSLPSLT Trigger: GGTTAAGGAAGGGAGGCTGGGATGATTGGGAAACAAGTTGGGGGTGAAATGGAAATTTGATTCGCTAAGTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000515592.1 |
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| CDS GCA 72 bp | TCTGCCCTTTCTACTTATGCATTGATGCTTGCTTACTaGCTACCATGGGAATCAAAGCCTGGCACTTTGCTA | + |
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Preference number: 6 (lower is better) Translates to: SALSTYALMLAY*LPWESKPGTLL Trigger: TAGCAAAGTGCCAGGCTTTGATTCCCATGGTAGGCAGTAAGCAAGCATCAATGCATAAGTAGAAAGGGCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515592.1 |
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| CDS CCA 72 bp | AAACAGATGTTGCATACCCTGACCCTATGCTTCATCTaGAAACCTACCCGACTAAGAGGTTATCTGCATAGG | + |
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Preference number: 6 (lower is better) Translates to: KQMLHTLTLCFI*KPTRLRGYLHR Trigger: CCTATGCAGATAACCTCTTAGTCGGGTAGGTTTCCAGATGAAGCATAGGGTCAGGGTATGCAACATCTGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515592.1 |
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| CDS GCA 72 bp | GCAAGAGTTAAACAGATGTTGCATACCCTGACCCTATaGTTCATCTGGAAACCTACCCGACTAAGAGGTTAT | + |
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Preference number: 6 (lower is better) Translates to: ARVKQMLHTLTL*FIWKPTRLRGY Trigger: ATAACCTCTTAGTCGGGTAGGTTTCCAGATGAAGCATAGGGTCAGGGTATGCAACATCTGTTTAACTCTTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515592.1 |
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| CDS TCA 72 bp | AAGGCTCCAAGATTAAACCATGCTATTTCAATACAGTaGACTCAGGGGAAGAACACAGACTTCTTCACTATT | + |
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Preference number: 6 (lower is better) Translates to: KAPRLNHAISIQ*TQGKNTDFFTI Trigger: AATAGTGAAGAAGTCTGTGTTCTTCCCCTGAGTTCACTGTATTGAAATAGCATGGTTTAATCTTGGAGCCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515592.1 |
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| CDS GCA 72 bp | AAAAATAGATTTTTGACCCTATGTCATTTGATCTTGTaGAAAGACTCTGAAATAGTTAAGCTGCTCATGACC | + |
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Preference number: 6 (lower is better) Translates to: KNRFLTLCHLIL*KDSEIVKLLMT Trigger: GGTCATGAGCAGCTTAACTATTTCAGAGTCTTTGCACAAGATCAAATGACATAGGGTCAAAAATCTATTTTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000515592.1 |
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