Pregenerated sensors for IGKV5-2 (Homo sapiens)

Ensembl gene IDs: ENSG00000211599

Ensembl transcript IDs: ENST00000390244.2, ENST00000632585.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	ATGTTGACTTTGTCTCCTGGAGTCGCTGACATGAATGCTGGAGACTaGGTGAGTGTCGTTTCTGCCCTGGTATCAGAGATCCAAAGGAGG	+
Preference number: 5 (lower is better) Translates to: MLTLSPGVADMNAGD*VSVVSALVSEIQRR Trigger: CCTCCTTTGGATCTCTGATACCAGGGCAGAAACGACACTCACGCAGTCTCCAGCATTCATGTCAGCGACTCCAGGAGACAAAGTCAACAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000390244.2 ENST00000632585.1
CDS CCA 90 bp	AACGAGAGTAGTAGCTTCTTGAATAATGAAAATAGCAGCTTCTCCTaGTTTCTGTTGGTACCAGTTCATATCATCATCAATGTCTTGGCT	+
Preference number: 5 (lower is better) Translates to: NESSSFLNNENSSFS*FLLVPVHIIINVLA Trigger: AGCCAAGACATTGATGATGATATGAACTGGTACCAACAGAAACCAGGAGAAGCTGCTATTTTCATTATTCAAGAAGCTACTACTCTCGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000390244.2 ENST00000632585.1
CDS GCA 72 bp	TTGTCTCCTGGAGTCGCTGACATGAATGCTGGAGACTaGGTGAGTGTCGTTTCTGCCCTGGTATCAGAGATC	+
Preference number: 6 (lower is better) Translates to: LSPGVADMNAGD*VSVVSALVSEI Trigger: GATCTCTGATACCAGGGCAGAAACGACACTCACGCAGTCTCCAGCATTCATGTCAGCGACTCCAGGAGACAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000390244.2 ENST00000632585.1
CDS CAA 72 bp	TCAATGTCTTGGCTGGCTTTGCAGGAGATGTTGACTTaGTCTCCTGGAGTCGCTGACATGAATGCTGGAGAC	+
Preference number: 6 (lower is better) Translates to: SMSWLALQEMLT*SPGVADMNAGD Trigger: GTCTCCAGCATTCATGTCAGCGACTCCAGGAGACAAAGTCAACATCTCCTGCAAAGCCAGCCAAGACATTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000390244.2 ENST00000632585.1
CDS CAA 72 bp	TCATCATCAATGTCTTGGCTGGCTTTGCAGGAGATGTaGACTTTGTCTCCTGGAGTCGCTGACATGAATGCT	+
Preference number: 6 (lower is better) Translates to: SSSMSWLALQEM*TLSPGVADMNA Trigger: AGCATTCATGTCAGCGACTCCAGGAGACAAAGTCAACATCTCCTGCAAAGCCAGCCAAGACATTGATGATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000390244.2 ENST00000632585.1
CDS CAA 90 bp	GCCACTGAATCGAGGTGGGATTCCAGGAACGAGAGTAGTAGCTTCTaGAATAATGAAAATAGCAGCTTCTCCTGGTTTCTGTTGGTACCA	+
Preference number: 6 (lower is better) Translates to: ATESRWDSRNESSSF*NNENSSFSWFLLVP Trigger: TGGTACCAACAGAAACCAGGAGAAGCTGCTATTTTCATTATTCAAGAAGCTACTACTCTCGTTCCTGGAATCCCACCTCGATTCAGTGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000390244.2 ENST00000632585.1
CDS CCA 72 bp	AGTAGCTTCTTGAATAATGAAAATAGCAGCTTCTCCTaGTTTCTGTTGGTACCAGTTCATATCATCATCAAT	+
Preference number: 6 (lower is better) Translates to: SSFLNNENSSFS*FLLVPVHIIIN Trigger: ATTGATGATGATATGAACTGGTACCAACAGAAACCAGGAGAAGCTGCTATTTTCATTATTCAAGAAGCTACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000390244.2 ENST00000632585.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu