Pregenerated sensors for IGHV6-1 (Homo sapiens)

Ensembl gene IDs: ENSG00000211933

Ensembl transcript IDs: ENST00000390593.2, ENST00000633299.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CTTGGACCTGTAGTATGTCCTTCCCAGCCACTCAAGGCCTCTCGATaGGGACTGCCTGATCCAGTTCCAAGCAGCACTGTTGCTAGAGAC	+
Preference number: 5 (lower is better) Translates to: LGPVVCPSQPLKASR*GLPDPVPSSTVARD Trigger: GTCTCTAGCAACAGTGCTGCTTGGAACTGGATCAGGCAGTCCCCATCGAGAGGCCTTGAGTGGCTGGGAAGGACATACTACAGGTCCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000390593.2 ENST00000633299.1
CDS GCA 90 bp	CTTGGATGTGTCTGGGTTGATGGTTATTCGACTTTTCACAGATACTaGATAATCATTATACCACTTGGACCTGTAGTATGTCCTTCCCAG	+
Preference number: 5 (lower is better) Translates to: LGCVWVDGYSTFHRY*IIIIPLGPVVCPSQ Trigger: CTGGGAAGGACATACTACAGGTCCAAGTGGTATAATGATTATGCAGTATCTGTGAAAAGTCGAATAACCATCAACCCAGACACATCCAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000390593.2 ENST00000633299.1
CDS CAA 90 bp	AGGCCTCTCGATGGGGACTGCCTGATCCAGTTCCAAGCAGCACTGTaGCTAGAGACACTGTCCCCGGAGATGGCACAGGTGAGTGAGAGG	+
Preference number: 6 (lower is better) Translates to: RPLDGDCLIQFQAAL*LETLSPEMAQVSER Trigger: CCTCTCACTCACCTGTGCCATCTCCGGGGACAGTGTCTCTAGCAACAGTGCTGCTTGGAACTGGATCAGGCAGTCCCCATCGAGAGGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000390593.2 ENST00000633299.1
CDS GCA 72 bp	GTCCTTCCCAGCCACTCAAGGCCTCTCGATGGGGACTaGCTGATCCAGTTCCAAGCAGCACTGTTGCTAGAG	+
Preference number: 6 (lower is better) Translates to: VLPSHSRPLDGD*LIQFQAALLLE Trigger: CTCTAGCAACAGTGCTGCTTGGAACTGGATCAGGCAGTCCCCATCGAGAGGCCTTGAGTGGCTGGGAAGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000390593.2 ENST00000633299.1
CDS CAA 72 bp	GATGGGGACTGCCTGATCCAGTTCCAAGCAGCACTGTaGCTAGAGACACTGTCCCCGGAGATGGCACAGGTG	+
Preference number: 6 (lower is better) Translates to: DGDCLIQFQAAL*LETLSPEMAQV Trigger: CACCTGTGCCATCTCCGGGGACAGTGTCTCTAGCAACAGTGCTGCTTGGAACTGGATCAGGCAGTCCCCATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000390593.2 ENST00000633299.1
CDS CCA 72 bp	GTAGTATGTCCTTCCCAGCCACTCAAGGCCTCTCGATaGGGACTGCCTGATCCAGTTCCAAGCAGCACTGTT	+
Preference number: 6 (lower is better) Translates to: VVCPSQPLKASR*GLPDPVPSSTV Trigger: AACAGTGCTGCTTGGAACTGGATCAGGCAGTCCCCATCGAGAGGCCTTGAGTGGCTGGGAAGGACATACTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000390593.2 ENST00000633299.1
CDS GCA 72 bp	GTCTGGGTTGATGGTTATTCGACTTTTCACAGATACTaGATAATCATTATACCACTTGGACCTGTAGTATGT	+
Preference number: 6 (lower is better) Translates to: VWVDGYSTFHRY*IIIIPLGPVVC Trigger: ACATACTACAGGTCCAAGTGGTATAATGATTATGCAGTATCTGTGAAAAGTCGAATAACCATCAACCCAGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000390593.2 ENST00000633299.1

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