Pregenerated sensors for IFNB1 (Homo sapiens)
Ensembl gene IDs: ENSG00000171855Ensembl transcript IDs: ENST00000380232.4
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | AGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTTaGAGCAATTGTCCAGTCCCAGAGGCACAGGCTAGG | + |
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Preference number: 3 (lower is better) Translates to: SHLNSICWLKNA*SNCPVPEAQAR Trigger: CCTAGCCTGTGCCTCTGGGACTGGACAATTGCTTCAAGCATTCTTCAACCAGCAGATGCTGTTTAAGTGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| 3UTR-3UTR CAA 90 bp | CTAGTGTCCTTTCATATGCAGTACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTaGAAGCAATTGTCCAGTCCC | + |
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Preference number: 3 (lower is better) Translates to: LVSFHMQYISHQSLKQHLLVEEC*KQLSSP Trigger: GGGACTGGACAATTGCTTCAAGCATTCTTCAACCAG...CAGATGCTGTTTAAGTGACTGATGGCTAATGTACTGCATATGAAAGGACACTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR CCA 90 bp | CAGTACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTTGGCGGCGTCCTCCTTCTaGAACTGCTGCAGCTGCTTA | + |
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Preference number: 4 (lower is better) Translates to: QYISHQSLKQHLLVEECLAASSF*NCCSCL Trigger: TAAGCAGCTGCAGCAGTTCCAGAAGGAGGACGCCGC...CAAGCATTCTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR TCA 90 bp | CAGTACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTTGATGGTCCAGGCACAGTaGCTGTACTCCTTGGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: QYISHQSLKQHLLVEECLMVQAQ*LYSLAF Trigger: GAAGGCCAAGGAGTACAGTCACTGTGCCTGGACCAT...CAAGCATTCTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTACTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR GCA 90 bp | ATGCAGTACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCGCCTACTACCTGTTGTaGCAGAGCAAAGGCTTCGAA | + |
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Preference number: 4 (lower is better) Translates to: MQYISHQSLKQHLLVEECAYYLL*QSKGFE Trigger: TTCGAAGCCTTTGCTCTGGCACAACAGGTAGTAGGC...GCATTCTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTACTGCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR CCA 90 bp | TACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTTGAAGGGAGCATCTCATAGATaGTCAATGCGGCGTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: YISHQSLKQHLLVEECLKGASHR*SMRRPP Trigger: AGGAGGACGCCGCATTGACCATCTATGAGATGCTCC...CTTCAAGCATTCTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR GCA 90 bp | TACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTTGAAGTCCTCCTTCTGGAACTaGTGCAGCTGCTTAATCTCC | + |
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Preference number: 4 (lower is better) Translates to: YISHQSLKQHLLVEECLKSSFWN*CSCLIS Trigger: GGAGATTAAGCAGCTGCAGCAGTTCCAGAAGGAGGA...CTTCAAGCATTCTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR TCA 90 bp | TACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTTGAAGACTTGTTGGTCATGTTaGCAACACGAACAGTGTCGC | + |
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Preference number: 4 (lower is better) Translates to: YISHQSLKQHLLVEECLKTCWSC*QHEQCR Trigger: GCGACACTGTTCGTGTTGTCAACATGACCAACAAGT...CTTCAAGCATTCTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR TCA 90 bp | ATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTTGAAGCAATTAGGATTTCCACTCTaGCTATGGTCCAGGCACAGT | + |
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Preference number: 4 (lower is better) Translates to: ISHQSLKQHLLVEECLKQLGFPL*LWSRHS Trigger: ACTGTGCCTGGACCATAGTCAGAGTGGAAATCCTAA...TTGCTTCAAGCATTCTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR GCA 90 bp | TTTCATATGCAGTACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAATGGAACTGCTGCAGCTaGTTAATCTCCTCAGGGATG | + |
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Preference number: 4 (lower is better) Translates to: FHMQYISHQSLKQHLLVEWNCCS*LISSGM Trigger: CATCCCTGAGGAGATTAAGCAGCTGCAGCAGTTCCA...TTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTACTGCATATGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR GCA 90 bp | TACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTTGAAGTCCTTCTGGAACTGCTaGAGCTGCTTAATCTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: YISHQSLKQHLLVEECLKSFWNC*SCLISS Trigger: TGAGGAGATTAAGCAGCTGCAGCAGTTCCAGAAGGA...CTTCAAGCATTCTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR GCA 90 bp | TTTCATATGCAGTACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAACTCATAGATGGTCAATaGGGCGTCCTCCTTCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: FHMQYISHQSLKQHLLVELIDGQ*GVLLLE Trigger: TTCCAGAAGGAGGACGCCGCATTGACCATCTATGAG...TTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTACTGCATATGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR TCA 90 bp | TACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTTGAAGTGGTTGAAGAATGCTTaGAGCAATTGTCCAGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: YISHQSLKQHLLVEECLKWLKNA*SNCPVP Trigger: TGGGACTGGACAATTGCTTCAAGCATTCTTCAACCA...CTTCAAGCATTCTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR CCA 90 bp | ATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTTGAAGCAAAACAGGAGAGCAATTTaGAGGAGACACTTGTTGGTC | + |
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Preference number: 4 (lower is better) Translates to: ISHQSLKQHLLVEECLKQNRRAI*RRHLLV Trigger: GACCAACAAGTGTCTCCTCCAAATTGCTCTCCTGTT...TTGCTTCAAGCATTCTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR TCA 90 bp | TTTCATATGCAGTACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAACCAGCCAGTGCTAGATaGATCTTGTCTGAAAATAGC | + |
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Preference number: 4 (lower is better) Translates to: FHMQYISHQSLKQHLLVEPASAR*ILSENS Trigger: GCTATTTTCAGACAAGATTCATCTAGCACTGGCTGG...TTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTACTGCATATGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR TCA 90 bp | TACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTTGAAGACAGCATCTGCTGGTTaGAGAATGCTTGAAGCAATT | + |
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Preference number: 4 (lower is better) Translates to: YISHQSLKQHLLVEECLKTASAG*RMLEAI Trigger: AATTGCTTCAAGCATTCTTCAACCAGCAGATGCTGT...CTTCAAGCATTCTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR GCA 90 bp | TTTCATATGCAGTACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAATCTGACACTGAAAATTaGTGCTTCTTTGTAGGAATC | + |
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Preference number: 4 (lower is better) Translates to: FHMQYISHQSLKQHLLVESDTEN*CFFVGI Trigger: GATTCCTACAAAGAAGCAGCAATTTTCAGTGTCAGA...TTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTACTGCATATGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS TCA 90 bp | AGCACAACAGGAGAGCAATTTGGAGGAGACACTTGTTGGTCATGTTaGCAACACGAACAGTGTCGCCTACTACCTGTTGTGCCAGAGCAA | + |
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Preference number: 5 (lower is better) Translates to: STTGEQFGGDTCWSC*QHEQCRLLPVVPEQ Trigger: TTGCTCTGGCACAACAGGTAGTAGGCGACACTGTTCGTGTTGTCAACATGACCAACAAGTGTCTCCTCCAAATTGCTCTCCTGTTGTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS GCA 90 bp | TCTGAAAATAGCAAAGATGTTCTGGAGCATCTCATAGATGGTCAATaGGGCGTCCTCCTTCTGGAACTGCTGCAGCTGCTTAATCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: SENSKDVLEHLIDGQ*GVLLLELLQLLNLL Trigger: GAGGAGATTAAGCAGCTGCAGCAGTTCCAGAAGGAGGACGCCGCATTGACCATCTATGAGATGCTCCAGAACATCTTTGCTATTTTCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS CCA 90 bp | CTCATGGAAAGAGCTGTAGTGGAGAAGCACAACAGGAGAGCAATTTaGAGGAGACACTTGTTGGTCATGTTGACAACACGAACAGTGTCG | + |
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Preference number: 5 (lower is better) Translates to: LMERAVVEKHNRRAI*RRHLLVMLTTRTVS Trigger: CGACACTGTTCGTGTTGTCAACATGACCAACAAGTGTCTCCTCCAAATTGCTCTCCTGTTGTGCTTCTCCACTACAGCTCTTTCCATGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS TCA 90 bp | TTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTTaGAGCAATTGTCCAGTCCCAGAGGCACAGGCTAGGAGATCTTCA | + |
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Preference number: 5 (lower is better) Translates to: LAISHLNSICWLKNA*SNCPVPEAQARRSS Trigger: TGAAGATCTCCTAGCCTGTGCCTCTGGGACTGGACAATTGCTTCAAGCATTCTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR CAA 90 bp | ATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTTGAAGCAAGTCGCCTACTACCTGTaGTGCCAGAGCAAAGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: ISHQSLKQHLLVEECLKQVAYYL*CQSKGF Trigger: GAAGCCTTTGCTCTGGCACAACAGGTAGTAGGCGAC...TTGCTTCAAGCATTCTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS GCA 90 bp | GCCTCCCATTCAATTGCCACAGGAGCTTCTGACACTGAAAATTGCTaGTTCTTTGTAGGAATCCAAGCAAGTTGTAGCTCATGGAAAGAG | + |
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Preference number: 5 (lower is better) Translates to: ASHSIATGASDTENC*FFVGIQASCSSWKE Trigger: CTCTTTCCATGAGCTACAACTTGCTTGGATTCCTACAAAGAAGCAGCAATTTTCAGTGTCAGAAGCTCCTGTGGCAATTGAATGGGAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS GCA 90 bp | CAAGCCTCCCATTCAATTGCCACAGGAGCTTCTGACACTGAAAATTaGTGCTTCTTTGTAGGAATCCAAGCAAGTTGTAGCTCATGGAAA | + |
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Preference number: 5 (lower is better) Translates to: QASHSIATGASDTEN*CFFVGIQASCSSWK Trigger: TTTCCATGAGCTACAACTTGCTTGGATTCCTACAAAGAAGCAGCAATTTTCAGTGTCAGAAGCTCCTGTGGCAATTGAATGGGAGGCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR CAA 90 bp | ATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTTGAAGCAAGAATGCTTGAAGCAATaGTCCAGTCCCAGAGGCACA | + |
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Preference number: 5 (lower is better) Translates to: ISHQSLKQHLLVEECLKQECLKQ*SSPRGT Trigger: TGTGCCTCTGGGACTGGACAATTGCTTCAAGCATTC...TTGCTTCAAGCATTCTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR CAA 90 bp | TACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTTGAAGCACTTGTTGGTCATGTaGACAACACGAACAGTGTCG | + |
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Preference number: 5 (lower is better) Translates to: YISHQSLKQHLLVEECLKHLLVM*TTRTVS Trigger: CGACACTGTTCGTGTTGTCAACATGACCAACAAGTG...CTTCAAGCATTCTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR CAA 90 bp | TACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAATGCTTGAAGTGGAGGAGACACTTGTaGGTCATGTTGACAACACGA | + |
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Preference number: 5 (lower is better) Translates to: YISHQSLKQHLLVEECLKWRRHL*VMLTTR Trigger: TCGTGTTGTCAACATGACCAACAAGTGTCTCCTCCA...CTTCAAGCATTCTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR CAA 90 bp | TTCATATGCAGTACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGAAGTTCATCCTGTCCTaGAGGCAGTATTCAAGCCTC | + |
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Preference number: 5 (lower is better) Translates to: FICSTLAISHLNSICWLKKFILS*RQYSSL Trigger: GAGGCTTGAATACTGCCTCAAGGACAGGATGAACTT...CTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTACTGCATATGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR CAA 90 bp | TTCATATGCAGTACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAAGCTGGTTGAAGAATGCTaGAAGCAATTGTCCAGTCCC | + |
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Preference number: 5 (lower is better) Translates to: FICSTLAISHLNSICWLKLVEEC*KQLSSP Trigger: GGGACTGGACAATTGCTTCAAGCATTCTTCAACCAG...CTTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTACTGCATATGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS TCA 90 bp | AGCCAGGAGGTTCTCAACAATAGTCTCATTCCAGCCAGTGCTAGATaGATCTTGTCTGAAAATAGCAAAGATGTTCTGGAGCATCTCATA | + |
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Preference number: 5 (lower is better) Translates to: SQEVLNNSLIPASAR*ILSENSKDVLEHLI Trigger: TATGAGATGCTCCAGAACATCTTTGCTATTTTCAGACAAGATTCATCTAGCACTGGCTGGAATGAGACTATTGTTGAGAACCTCCTGGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR CAA 90 bp | TTTCATATGCAGTACATTAGCCATCAGTCACTTAAACAGCATCTGCTGGTTGAACAACAGGAGAGCAATTaGGAGGAGACACTTGTTGGT | + |
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Preference number: 5 (lower is better) Translates to: FHMQYISHQSLKQHLLVEQQESN*EETLVG Trigger: ACCAACAAGTGTCTCCTCCAAATTGCTCTCCTGTTG...TTCAACCAGCAGATGCTGTTTAAGTGACTGATGGCTAATGTACTGCATATGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS-3UTR CAA 90 bp | CTAGTGTCCTTTCATATGCAGTACATTAGCCATCAGTCACTTAAACAGCATCTGATTTGGAGGAGACACTaGTTGGTCATGTTGACAACA | + |
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Preference number: 5 (lower is better) Translates to: LVSFHMQYISHQSLKQHLIWRRH*LVMLTT Trigger: TGTTGTCAACATGACCAACAAGTGTCTCCTCCAAAT...CAGATGCTGTTTAAGTGACTGATGGCTAATGTACTGCATATGAAAGGACACTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS GCA 72 bp | GTCAATGCGGCGTCCTCCTTCTGGAACTGCTGCAGCTaGTTAATCTCCTCAGGGATGTCAAAGTTCATCCTG | + |
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Preference number: 6 (lower is better) Translates to: VNAASSFWNCCS*LISSGMSKFIL Trigger: CAGGATGAACTTTGACATCCCTGAGGAGATTAAGCAGCTGCAGCAGTTCCAGAAGGAGGACGCCGCATTGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS CAA 90 bp | AAGCACAACAGGAGAGCAATTTGGAGGAGACACTTGTTGGTCATGTaGACAACACGAACAGTGTCGCCTACTACCTGTTGTGCCAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: KHNRRAIWRRHLLVM*TTRTVSPTTCCARA Trigger: TGCTCTGGCACAACAGGTAGTAGGCGACACTGTTCGTGTTGTCAACATGACCAACAAGTGTCTCCTCCAAATTGCTCTCCTGTTGTGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS TCA 72 bp | GGAGAGCAATTTGGAGGAGACACTTGTTGGTCATGTTaGCAACACGAACAGTGTCGCCTACTACCTGTTGTG | + |
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Preference number: 6 (lower is better) Translates to: GEQFGGDTCWSC*QHEQCRLLPVV Trigger: CACAACAGGTAGTAGGCGACACTGTTCGTGTTGTCAACATGACCAACAAGTGTCTCCTCCAAATTGCTCTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS GCA 72 bp | GTTGACAACACGAACAGTGTCGCCTACTACCTGTTGTaGCAGAGCAAAGGCTTCGAAAGGTTGCAGTTAGAA | + |
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Preference number: 6 (lower is better) Translates to: VDNTNSVAYYLL*QSKGFERLQLE Trigger: TTCTAACTGCAACCTTTCGAAGCCTTTGCTCTGGCACAACAGGTAGTAGGCGACACTGTTCGTGTTGTCAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS CAA 72 bp | CATGTTGACAACACGAACAGTGTCGCCTACTACCTGTaGTGCCAGAGCAAAGGCTTCGAAAGGTTGCAGTTA | + |
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Preference number: 6 (lower is better) Translates to: HVDNTNSVAYYL*CQSKGFERLQL Trigger: TAACTGCAACCTTTCGAAGCCTTTGCTCTGGCACAACAGGTAGTAGGCGACACTGTTCGTGTTGTCAACATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS CAA 90 bp | GCTCATGGAAAGAGCTGTAGTGGAGAAGCACAACAGGAGAGCAATTaGGAGGAGACACTTGTTGGTCATGTTGACAACACGAACAGTGTC | + |
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Preference number: 6 (lower is better) Translates to: AHGKSCSGEAQQESN*EETLVGHVDNTNSV Trigger: GACACTGTTCGTGTTGTCAACATGACCAACAAGTGTCTCCTCCAAATTGCTCTCCTGTTGTGCTTCTCCACTACAGCTCTTTCCATGAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS CCA 72 bp | AGAGCTGTAGTGGAGAAGCACAACAGGAGAGCAATTTaGAGGAGACACTTGTTGGTCATGTTGACAACACGA | + |
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Preference number: 6 (lower is better) Translates to: RAVVEKHNRRAI*RRHLLVMLTTR Trigger: TCGTGTTGTCAACATGACCAACAAGTGTCTCCTCCAAATTGCTCTCCTGTTGTGCTTCTCCACTACAGCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS CAA 72 bp | AGGAGAGCAATTTGGAGGAGACACTTGTTGGTCATGTaGACAACACGAACAGTGTCGCCTACTACCTGTTGT | + |
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Preference number: 6 (lower is better) Translates to: RRAIWRRHLLVM*TTRTVSPTTCC Trigger: ACAACAGGTAGTAGGCGACACTGTTCGTGTTGTCAACATGACCAACAAGTGTCTCCTCCAAATTGCTCTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS CAA 72 bp | AAGCACAACAGGAGAGCAATTTGGAGGAGACACTTGTaGGTCATGTTGACAACACGAACAGTGTCGCCTACT | + |
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Preference number: 6 (lower is better) Translates to: KHNRRAIWRRHL*VMLTTRTVSPT Trigger: AGTAGGCGACACTGTTCGTGTTGTCAACATGACCAACAAGTGTCTCCTCCAAATTGCTCTCCTGTTGTGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS CAA 72 bp | AAGAGCTGTAGTGGAGAAGCACAACAGGAGAGCAATTaGGAGGAGACACTTGTTGGTCATGTTGACAACACG | + |
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Preference number: 6 (lower is better) Translates to: KSCSGEAQQESN*EETLVGHVDNT Trigger: CGTGTTGTCAACATGACCAACAAGTGTCTCCTCCAAATTGCTCTCCTGTTGTGCTTCTCCACTACAGCTCTT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS GCA 72 bp | TCAATTGCCACAGGAGCTTCTGACACTGAAAATTGCTaGTTCTTTGTAGGAATCCAAGCAAGTTGTAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: SIATGASDTENC*FFVGIQASCSS Trigger: TGAGCTACAACTTGCTTGGATTCCTACAAAGAAGCAGCAATTTTCAGTGTCAGAAGCTCCTGTGGCAATTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS GCA 72 bp | CATTCAATTGCCACAGGAGCTTCTGACACTGAAAATTaGTGCTTCTTTGTAGGAATCCAAGCAAGTTGTAGC | + |
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Preference number: 6 (lower is better) Translates to: HSIATGASDTEN*CFFVGIQASCS Trigger: GCTACAACTTGCTTGGATTCCTACAAAGAAGCAGCAATTTTCAGTGTCAGAAGCTCCTGTGGCAATTGAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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| CDS TCA 72 bp | GTTCTCAACAATAGTCTCATTCCAGCCAGTGCTAGATaGATCTTGTCTGAAAATAGCAAAGATGTTCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: VLNNSLIPASAR*ILSENSKDVLE Trigger: CTCCAGAACATCTTTGCTATTTTCAGACAAGATTCATCTAGCACTGGCTGGAATGAGACTATTGTTGAGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380232.4 |
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