Pregenerated sensors for IFNA6 (Homo sapiens)
Ensembl gene IDs: ENSG00000120235Ensembl transcript IDs: ENST00000259555.5, ENST00000380210.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | GAAAGTGCAAGCTGGTGTAGTCGTCAATGGGAGTCGTTTCTGTGTTGGATCAGGTGGTGTAGTCGTCAATaGGAGTCGTTTCTGTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: ESASWCSRQWESFLCWIRWCSRQ*ESFLCW Trigger: CCAACACAGAAACGACTCCCATTGACGACTACACCA...CCTGATCCAACACAGAAACGACTCCCATTGACGACTACACCAGCTTGCACTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000259555.5 ENST00000380210.1 |
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| CDS-3UTR CCA 90 bp | GAAAGTGCAAGCTGGTGTAGTCGTCAATGGGAGTCGTTTCTGTGTTGGATCAGGCATGAAAGTGCAAGCTaGTGTAGTCGTCAATGGGAG | + |
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Preference number: 4 (lower is better) Translates to: ESASWCSRQWESFLCWIRHESAS*CSRQWE Trigger: CTCCCATTGACGACTACACCAGCTTGCACTTTCATG...CCTGATCCAACACAGAAACGACTCCCATTGACGACTACACCAGCTTGCACTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000259555.5 ENST00000380210.1 |
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| CDS-3UTR GCA 90 bp | ATGAAAGTGCAAGCTGGTGTAGTCGTCAATGGGAGTCGTTTCTGTGTTGGATCAGACACTCCCTTCTCTTaGCTGCCTCCAGAGTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: MKVQAGVVVNGSRFCVGSDTPFS*LPPESF Trigger: AAAAGACTCTGGAGGCAGGCAAGAGAAGGGAGTGTC...TGATCCAACACAGAAACGACTCCCATTGACGACTACACCAGCTTGCACTTTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380210.1 |
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| CDS-3UTR CCA 90 bp | AAAGTGCAAGCTGGTGTAGTCGTCAATGGGAGTCGTTTCTGTGTTGGATCAGGTTGGTGTAGTCGTCAATaGGAGTCGTTTCTGTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: KVQAGVVVNGSRFCVGSGWCSRQ*ESFLCW Trigger: CCAACACAGAAACGACTCCCATTGACGACTACACCA...ACCTGATCCAACACAGAAACGACTCCCATTGACGACTACACCAGCTTGCACTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000259555.5 ENST00000380210.1 |
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| CDS-3UTR CCA 90 bp | GAAAGTGCAAGCTGGTGTAGTCGTCAATGGGAGTCGTTTCTGTGTTGGATCAGGGAGTCGTTTCTGTGTTaGATCAGGTCTTATTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: ESASWCSRQWESFLCWIRESFLC*IRSYSF Trigger: GAAGGAATAAGACCTGATCCAACACAGAAACGACTC...CCTGATCCAACACAGAAACGACTCCCATTGACGACTACACCAGCTTGCACTTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000259555.5 ENST00000380210.1 |
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| CDS-3UTR CCA 90 bp | AAAGTGCAAGCTGGTGTAGTCGTCAATGGGAGTCGTTTCTGTGTTGGATCAGGTGAGTCGTTTCTGTGTTaGATCAGGTCTTATTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: KVQAGVVVNGSRFCVGSGESFLC*IRSYSF Trigger: GAAGGAATAAGACCTGATCCAACACAGAAACGACTC...ACCTGATCCAACACAGAAACGACTCCCATTGACGACTACACCAGCTTGCACTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000259555.5 ENST00000380210.1 |
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| CDS-3UTR CCA 90 bp | ATGAAAGTGCAAGCTGGTGTAGTCGTCAATGGGAGTCGTTTCTGTGTTGGATCAGTTGGAGAATCGGCTTaGTGTTTCTCCTTAGAGAAT | + |
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Preference number: 4 (lower is better) Translates to: MKVQAGVVVNGSRFCVGSVGESA*CFSLEN Trigger: ATTCTCTAAGGAGAAACACCAAGCCGATTCTCCAAC...TGATCCAACACAGAAACGACTCCCATTGACGACTACACCAGCTTGCACTTTCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380210.1 |
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| CDS-3UTR GCA 90 bp | CATGAAAGTGCAAGCTGGTGTAGTCGTCAATGGGAGTCGTTTCTGTGTTGGATCCTCCTTAACCTTTCTTaGAAGTTTCTTGATGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: HESASWCSRQWESFLCWILLNLS*KFLDEE Trigger: CTCTTCATCAAGAAACTTGCAAGAAAGGTTAAGGAG...GATCCAACACAGAAACGACTCCCATTGACGACTACACCAGCTTGCACTTTCATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000259555.5 ENST00000380210.1 |
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| CDS-3UTR CAA 90 bp | AAAGTGCAAGCTGGTGTAGTCGTCAATGGGAGTCGTTTCTGTGTTGGATCAGGTGGAGTCGTTTCTGTGTaGGATCAGGTCTTATTCCTT | + |
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Preference number: 5 (lower is better) Translates to: KVQAGVVVNGSRFCVGSGGVVSV*DQVLFL Trigger: AAGGAATAAGACCTGATCCAACACAGAAACGACTCC...ACCTGATCCAACACAGAAACGACTCCCATTGACGACTACACCAGCTTGCACTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000259555.5 ENST00000380210.1 |
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| CDS-3UTR CAA 90 bp | AAAGTGCAAGCTGGTGTAGTCGTCAATGGGAGTCGTTTCTGTGTTGGATCAGGTTGTATGTGGTCATTATaGACACTCCCTTCTCTTGCC | + |
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Preference number: 5 (lower is better) Translates to: KVQAGVVVNGSRFCVGSGCMWSL*TLPSLA Trigger: GGCAAGAGAAGGGAGTGTCAATAATGACCACATACA...ACCTGATCCAACACAGAAACGACTCCCATTGACGACTACACCAGCTTGCACTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380210.1 |
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| CDS-3UTR CAA 90 bp | ATGAAAGTGCAAGCTGGTGTAGTCGTCAATGGGAGTCGTTTCTGTGTTGGATCAGGAGTCGTTTCTGTGTaGGATCAGGTCTTATTCCTT | + |
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Preference number: 5 (lower is better) Translates to: MKVQAGVVVNGSRFCVGSGVVSV*DQVLFL Trigger: AAGGAATAAGACCTGATCCAACACAGAAACGACTCC...TGATCCAACACAGAAACGACTCCCATTGACGACTACACCAGCTTGCACTTTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000259555.5 ENST00000380210.1 |
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| CDS-3UTR CAA 90 bp | GAAAGTGCAAGCTGGTGTAGTCGTCAATGGGAGTCGTTTCTGTGTTGGATCAGGAAATACTTGACGCGTTaGATTCAACTCATGGTATGG | + |
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Preference number: 5 (lower is better) Translates to: ESASWCSRQWESFLCWIRKYLTR*IQLMVW Trigger: CCATACCATGAGTTGAATCAAACGCGTCAAGTATTT...CCTGATCCAACACAGAAACGACTCCCATTGACGACTACACCAGCTTGCACTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380210.1 |
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| CDS-3UTR CAA 90 bp | ATGAAAGTGCAAGCTGGTGTAGTCGTCAATGGGAGTCGTTTCTGTGTTGGATCATGTTGGAGAATCGGCTaGGTGTTTCTCCTTAGAGAA | + |
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Preference number: 5 (lower is better) Translates to: MKVQAGVVVNGSRFCVGSCWRIG*VFLLRE Trigger: TTCTCTAAGGAGAAACACCAAGCCGATTCTCCAACA...TGATCCAACACAGAAACGACTCCCATTGACGACTACACCAGCTTGCACTTTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380210.1 |
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| CDS TCA 72 bp | TTTGTGTGTGTGTTTGTGTGTGTATGTGGTCATTATTaGCACTCCCTTCTCTTGCCTGCCTCCAGAGTCTTT | + |
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Preference number: 6 (lower is better) Translates to: FVCVFVCVCGHY*HSLLLPASRVF Trigger: AAAGACTCTGGAGGCAGGCAAGAGAAGGGAGTGTCAATAATGACCACATACACACACAAACACACACACAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380210.1 |
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| CDS CCA 72 bp | TTCAACCAGTTTTGTGTGTGTGTTTGTGTGTGTATGTaGTCATTATTGACACTCCCTTCTCTTGCCTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: FNQFCVCVCVCM*SLLTLPSLACL Trigger: GAGGCAGGCAAGAGAAGGGAGTGTCAATAATGACCACATACACACACAAACACACACACAAAACTGGTTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380210.1 |
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| CDS CAA 72 bp | TTTTGTGTGTGTGTTTGTGTGTGTATGTGGTCATTATaGACACTCCCTTCTCTTGCCTGCCTCCAGAGTCTT | + |
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Preference number: 6 (lower is better) Translates to: FCVCVCVCMWSL*TLPSLACLQSL Trigger: AAGACTCTGGAGGCAGGCAAGAGAAGGGAGTGTCAATAATGACCACATACACACACAAACACACACACAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380210.1 |
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| CDS CAA 90 bp | CTACATGGGTATAGAGTAGTTTTTCAACCAGTTTTGTGTGTGTGTTaGTGTGTGTATGTGGTCATTATTGACACTCCCTTCTCTTGCCTG | + |
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Preference number: 6 (lower is better) Translates to: LHGYRVVFQPVLCVC*CVYVVIIDTPFSCL Trigger: CAGGCAAGAGAAGGGAGTGTCAATAATGACCACATACACACACAAACACACACACAAAACTGGTTGAAAAACTACTCTATACCCATGTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000380210.1 |
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| CDS CAA 72 bp | TATAGAGTAGTTTTTCAACCAGTTTTGTGTGTGTGTTaGTGTGTGTATGTGGTCATTATTGACACTCCCTTC | + |
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Preference number: 6 (lower is better) Translates to: YRVVFQPVLCVC*CVYVVIIDTPF Trigger: GAAGGGAGTGTCAATAATGACCACATACACACACAAACACACACACAAAACTGGTTGAAAAACTACTCTATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000380210.1 |
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| CDS CAA 90 bp | TTTATTTACTCTCTACATGGGTATAGAGTAGTTTTTCAACCAGTTTaGTGTGTGTGTTTGTGTGTGTATGTGGTCATTATTGACACTCCC | + |
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Preference number: 6 (lower is better) Translates to: FIYSLHGYRVVFQPV*CVCLCVYVVIIDTP Trigger: GGGAGTGTCAATAATGACCACATACACACACAAACACACACACAAAACTGGTTGAAAAACTACTCTATACCCATGTAGAGAGTAAATAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380210.1 |
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| CDS CAA 72 bp | TCTCTACATGGGTATAGAGTAGTTTTTCAACCAGTTTaGTGTGTGTGTTTGTGTGTGTATGTGGTCATTATT | + |
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Preference number: 6 (lower is better) Translates to: SLHGYRVVFQPV*CVCLCVYVVII Trigger: AATAATGACCACATACACACACAAACACACACACAAAACTGGTTGAAAAACTACTCTATACCCATGTAGAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000380210.1 |
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