Pregenerated sensors for IFITM3 (Homo sapiens)
Ensembl gene IDs: ENSG00000142089Ensembl transcript IDs: ENST00000602735.2, ENST00000602809.1, ENST00000602949.1, ENST00000680622.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCTGTGCCGTCTCAGACTGGACTCTGGGGTCTCCGGTGCCTCCTCTaGTTCTGCACCTCGGTGCAGCCTCTGGCCTGGCTGCGCTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: PVPSQTGLWGLRCLL*FCTSVQPLAWLRSE Trigger: CTCAGAGCGCAGCCAGGCCAGAGGCTGCACCGAGGTGCAGAATCAGAGGAGGCACCGGAGACCCCAGAGTCCAGTCTGAGACGGCACAGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000602735.2 ENST00000680622.1 |
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| CDS CCA 90 bp | GCTTGTCAAGGCCACCAGAGACCTGCTCCCTGTGCCGTCTCAGACTaGACTCTGGGGTCTCCGGTGCCTCCTCTGATTCTGCACCTCGGT | + |
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Preference number: 5 (lower is better) Translates to: ACQGHQRPAPCAVSD*TLGSPVPPLILHLG Trigger: ACCGAGGTGCAGAATCAGAGGAGGCACCGGAGACCCCAGAGTCCAGTCTGAGACGGCACAGGGAGCAGGTCTCTGGTGGCCTTGACAAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000602735.2 ENST00000680622.1 |
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| CDS GCA 90 bp | ACCCTATCCTGGAGCTTGTCAAGGCCACCAGAGACCTGCTCCCTGTaGCGTCTCAGACTGGACTCTGGGGTCTCCGGTGCCTCCTCTGAT | + |
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Preference number: 5 (lower is better) Translates to: TLSWSLSRPPETCSL*RLRLDSGVSGASSD Trigger: ATCAGAGGAGGCACCGGAGACCCCAGAGTCCAGTCTGAGACGGCACAGGGAGCAGGTCTCTGGTGGCCTTGACAAGCTCCAGGATAGGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000602735.2 ENST00000680622.1 |
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| CDS CCA 90 bp | TCTGTTTCCTGCTCAGGAGAGGCCCCTGCACCCTCCAAGAGGAAGTaGGAGTCACGTGAGGCTCGTCTTGATTGGGGTTCCTGGAGAGGA | + |
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Preference number: 5 (lower is better) Translates to: SVSCSGEAPAPSKRK*ESREARLDWGSWRG Trigger: TCCTCTCCAGGAACCCCAATCAAGACGAGCCTCACGTGACTCCCACTTCCTCTTGGAGGGTGCAGGGGCCTCTCCTGAGCAGGAAACAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000680622.1 |
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| CDS GCA 90 bp | CCTGGGCACCTGGGTCATCCTCCACCCACAGCTGACTTCACACCGTaGTCTTCCTTGAGCATGTCTCAGGTTTCCGGGAAGCTGATGTTT | + |
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Preference number: 5 (lower is better) Translates to: PGHLGHPPPTADFTP*SSLSMSQVSGKLMF Trigger: AAACATCAGCTTCCCGGAAACCTGAGACATGCTCAAGGAAGAGCACGGTGTGAAGTCAGCTGTGGGTGGAGGATGACCCAGGTGCCCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000602949.1 |
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| CDS GCA 90 bp | ACTGGGCACCTGGGTCATCCTCCACCCACAGCTGACTTCACACCGTaGTCTTCCTTGAGCATGTCTCAGGTTTCCGGGAAGCTGATGTTT | + |
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Preference number: 5 (lower is better) Translates to: TGHLGHPPPTADFTP*SSLSMSQVSGKLMF Trigger: AAACATCAGCTTCCCGGAAACCTGAGACATGCTCAAGGAAGAGCACGGTGTGAAGTCAGCTGTGGGTGGAGGATGACCCAGGTGCCCAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000680622.1 |
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| CDS TCA 90 bp | TATGGTGCCCAGGCAGCTGGCGTTCAGGCCTGCTCAGGCGTCTCATaGCCTTCACTGTACTTCTTAGATAAAACAGAATACTTGAAGTCA | + |
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Preference number: 5 (lower is better) Translates to: YGAQAAGVQACSGVS*PSLYFLDKTEYLKS Trigger: TGACTTCAAGTATTCTGTTTTATCTAAGAAGTACAGTGAAGGTCATGAGACGCCTGAGCAGGCCTGAACGCCAGCTGCCTGGGCACCATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602809.1 |
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| CDS CCA 72 bp | GGCCACCAGAGACCTGCTCCCTGTGCCGTCTCAGACTaGACTCTGGGGTCTCCGGTGCCTCCTCTGATTCTG | + |
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Preference number: 6 (lower is better) Translates to: GHQRPAPCAVSD*TLGSPVPPLIL Trigger: CAGAATCAGAGGAGGCACCGGAGACCCCAGAGTCCAGTCTGAGACGGCACAGGGAGCAGGTCTCTGGTGGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000602735.2 ENST00000680622.1 |
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| CDS GCA 72 bp | ACCCTATCCTGGAGCTTGTCAAGGCCACCAGAGACCTaGTCCCTGTGCCGTCTCAGACTGGACTCTGGGGTC | + |
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Preference number: 6 (lower is better) Translates to: TLSWSLSRPPET*SLCRLRLDSGV Trigger: GACCCCAGAGTCCAGTCTGAGACGGCACAGGGAGCAGGTCTCTGGTGGCCTTGACAAGCTCCAGGATAGGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000602735.2 ENST00000680622.1 |
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| CDS CCA 72 bp | AAGAGGAAGTGGGAGTCACGTGAGGCTCGTCTTGATTaGGGTTCCTGGAGAGGAGGCCCCCTCTCCCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: KRKWESREARLD*GSWRGGPLSPG Trigger: ACCTGGGGAGAGGGGGCCTCCTCTCCAGGAACCCCAATCAAGACGAGCCTCACGTGACTCCCACTTCCTCTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000602735.2 ENST00000680622.1 |
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| CDS CCA 72 bp | AAACAGTTTGTGCCTTCAGTCTCTTGCCTGGGCACCTaGGTCATCCTCCACCCACAGCTGACTTCACACCGT | + |
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Preference number: 6 (lower is better) Translates to: KQFVPSVSCLGT*VILHPQLTSHR Trigger: ACGGTGTGAAGTCAGCTGTGGGTGGAGGATGACCCAGGTGCCCAGGCAAGAGACTGAAGGCACAAACTGTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000602949.1 |
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| CDS CAA 72 bp | CCTCCACCCACAGCTGACTTCACACCGTGCTCTTCCTaGAGCATGTCTCAGGTTTCCGGGAAGCTGATGTTT | + |
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Preference number: 6 (lower is better) Translates to: PPPTADFTPCSS*SMSQVSGKLMF Trigger: AAACATCAGCTTCCCGGAAACCTGAGACATGCTCAAGGAAGAGCACGGTGTGAAGTCAGCTGTGGGTGGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000602949.1 ENST00000680622.1 |
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| CDS TCA 72 bp | CAGGCAGCTGGCGTTCAGGCCTGCTCAGGCGTCTCATaGCCTTCACTGTACTTCTTAGATAAAACAGAATAC | + |
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Preference number: 6 (lower is better) Translates to: QAAGVQACSGVS*PSLYFLDKTEY Trigger: GTATTCTGTTTTATCTAAGAAGTACAGTGAAGGTCATGAGACGCCTGAGCAGGCCTGAACGCCAGCTGCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602809.1 |
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