RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IFIT1 (Homo sapiens)

Ensembl gene IDs: ENSG00000185745

Ensembl transcript IDs: ENST00000371804.4, ENST00000546318.2

Found 215 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGTGGAAACCGCAAGAGGGGAGGGGAGTCTGGCTGTGGCGCTACGTaGAGTGAGCTAGGTGAAGTCAGCCAAGGAGTGAGTCTTCTGTTC +
Preference number: 1 (lower is better)
Translates to: CGNRKRGGESGCGAT*SELGEVSQGVSLLF
Trigger: GAACAGAAGACTCACTCCTTGGCTGACTTCACCTAGCTCACTCCACGTAGCGCCACAGCCAGACTCCCCTCCCCTCTTGCGGTTTCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 90 bp AGGCACCCTGTGTGCAGCCTCCATGGACTGGCCAGAACCAGTCTGTaGGCAGTGGTCACTTATCAGGAGGGAAGGCTGATCAGTTGTCAT +
Preference number: 1 (lower is better)
Translates to: RHPVCSLHGLARTSL*AVVTYQEGRLISCH
Trigger: ATGACAACTGATCAGCCTTCCCTCCTGATAAGTGACCACTGCCCACAGACTGGTTCTGGCCAGTCCATGGAGGCTGCACACAGGGTGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 90 bp CAGCAAGATTTATTGAAAGAGCGAAAGAACAAAACTTCCACAGCATaGAAGGGGACCCGAGCGGGTTGCCGCTGCCAGCTCGGGTGGCCT +
Preference number: 1 (lower is better)
Translates to: QQDLLKERKNKTSTA*KGTRAGCRCQLGWP
Trigger: AGGCCACCCGAGCTGGCAGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCTCTTTCAATAAATCTTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 90 bp CAGCCTGGGAAGCAGAGCCTACCACAGCAACCAAAAGCAGGCTCTTaGAGGAAGGGAGGGTATTACAGAAGTTTTATGGTTGGTGGATTG +
Preference number: 1 (lower is better)
Translates to: QPGKQSLPQQPKAGS*RKGGYYRSFMVGGL
Trigger: CAATCCACCAACCATAAAACTTCTGTAATACCCTCCCTTCCTCCAAGAGCCTGCTTTTGGTTGCTGTGGTAGGCTCTGCTTCCCAGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR GCA 90 bp ATTTGCGGATGGGGCAATTATTCTGGATTATGCAGGTGGACCTGGTaGGTCCTTAGAAGAAAGAGGCAAAAGAGTCAGAGGAGAGAAGGA +
Preference number: 1 (lower is better)
Translates to: ICGWGNYSGLCRWTW*VLRRKRQKSQRREG
Trigger: TCCTTCTCTCCTCTGACTCTTTTGCCTCTTTCTTCTAAGGACGCACCAGGTCCACCTGCATAATCCAGAATAATTGCCCCATCCGCAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 90 bp AGGATTTGCGGATGGGGCAATTATTCTGGATTATGCAGGTGGACCTaGTGCGTCCTTAGAAGAAAGAGGCAAAAGAGTCAGAGGAGAGAA +
Preference number: 1 (lower is better)
Translates to: RICGWGNYSGLCRWT*CVLRRKRQKSQRRE
Trigger: TTCTCTCCTCTGACTCTTTTGCCTCTTTCTTCTAAGGACGCACCAGGTCCACCTGCATAATCCAGAATAATTGCCCCATCCGCAAATCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR TCA 90 bp CCTCCGGAGGAGTGTAGCGTCATCAATACCTTGACTTTGGCTCATTaGAACCCATTTCAGACTTCTGACCTCCAGAACTGTAAGAAAGAG +
Preference number: 1 (lower is better)
Translates to: PPEECSVINTLTLAH*NPFQTSDLQNCKKE
Trigger: CTCTTTCTTACAGTTCTGGAGGTCAGAAGTCTGAAATGGGTTTCAATGAGCCAAAGTCAAGGTATTGATGACGCTACACTCCTCCGGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 90 bp AAATTAAGGATTTGCGGATGGGGCAATTATTCTGGATTATGCAGGTaGACCTGGTGCGTCCTTAGAAGAAAGAGGCAAAAGAGTCAGAGG +
Preference number: 1 (lower is better)
Translates to: KLRICGWGNYSGLCR*TWCVLRRKRQKSQR
Trigger: CCTCTGACTCTTTTGCCTCTTTCTTCTAAGGACGCACCAGGTCCACCTGCATAATCCAGAATAATTGCCCCATCCGCAAATCCTTAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 90 bp AGCAGAGAGAGAGATTTGAGGCTACTACACTGTTGGTTTTTAAGATaGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTAT +
Preference number: 1 (lower is better)
Translates to: SRERDLRLLHCWFLR*MKEFRQPLEAGKGY
Trigger: ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAACCAACAGTGTAGTAGCCTCAAATCTCTCTCTCTGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 90 bp TGTGAAGAAGGAAGCAGAGAGAGAGATTTGAGGCTACTACACTGTTaGTTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCT +
Preference number: 1 (lower is better)
Translates to: CEEGSRERDLRLLHC*FLRWMKEFRQPLEA
Trigger: AGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAACCAACAGTGTAGTAGCCTCAAATCTCTCTCTCTGCTTCCTTCTTCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR GCA 90 bp TTACATAGCAAAAGGGACTTTGCAGATGTTATTAAATTAAGGATTTaGGGATGGGGCAATTATTCTGGATTATGCAGGTGGACCTGGTGC +
Preference number: 1 (lower is better)
Translates to: LHSKRDFADVIKLRI*GWGNYSGLCRWTWC
Trigger: GCACCAGGTCCACCTGCATAATCCAGAATAATTGCCCCATCCGCAAATCCTTAATTTAATAACATCTGCAAAGTCCCTTTTGCTATGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR TCA 90 bp AGTCCAATGGCAGTTAGCAAGGGAGGGAATATAATGAGGTGTGAATaGTCTCTCATCTTGTCATGGTTGGGAAACTTAGTTTTTAAGGTT +
Preference number: 1 (lower is better)
Translates to: SPMAVSKGGNIMRCE*SLILSWLGNLVFKV
Trigger: AACCTTAAAAACTAAGTTTCCCAACCATGACAAGATGAGAGATCATTCACACCTCATTATATTCCCTCCCTTGCTAACTGCCATTGGACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 90 bp TACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTaGGAAGAATATGTGCCTGTTTATTACAGTATTTTTGGTTTCTTG +
Preference number: 1 (lower is better)
Translates to: YCYLCLSLDCKLHEV*EEYVPVYYSIFGFL
Trigger: CAAGAAACCAAAAATACTGTAATAAACAGGCACATATTCTTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR GCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGTGCCATTGCCAAGGCTaGTCTCGAACTCCTGGGTTC +
Preference number: 2 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQCHCQG*SRTPGF
Trigger: GAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCA...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGCTGCTCTCGAACTCCTaGGTTCAGGTGATCTGCCTG +
Preference number: 2 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQLLSNS*VQVICL
Trigger: CAGGCAGATCACCTGAACCCAGGAGTTCGAGAGCAG...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CAA 90 bp CAGTCTGTGGGCAGTGGTCACTTATCAGGAGGGAAGGCTGATCAGTaGTCATGTGGAAACCGCAAGAGGGGAGGGGAGTCTGGCTGTGGC +
Preference number: 2 (lower is better)
Translates to: QSVGSGHLSGGKADQ*SCGNRKRGGESGCG
Trigger: GCCACAGCCAGACTCCCCTCCCCTCTTGCGGTTTCCACATGACAACTGATCAGCCTTCCCTCCTGATAAGTGACCACTGCCCACAGACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR TCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGCTGAGTAGCTGGAACTaGAGCTACAGGTGCATGCCA +
Preference number: 2 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQLSSWN*SYRCMP
Trigger: TGGCATGCACCTGTAGCTTCAGTTCCAGCTACTCAG...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR GCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTTGCCATTGCCAAGGCTaGTCTCGAACTCCTGGGTTC +
Preference number: 2 (lower is better)
Translates to: SERTKLPQHGRGPERVAACHCQG*SRTPGF
Trigger: GAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCA...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGCCAAAAGCAGGCTCTTaGAGGAAGGGAGGGTATTAC +
Preference number: 2 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQPKAGS*RKGGYY
Trigger: GTAATACCCTCCCTTCCTCCAAGAGCCTGCTTTTGG...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR TCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGCTGAGATTACAGGCGTaGGCCACTGCAGCCTCCTCT +
Preference number: 2 (lower is better)
Translates to: VGFAIAKAALELLGSGDLLRLQA*ATAASS
Trigger: AGAGGAGGCTGCAGTGGCTCACGCCTGTAATCTCAG...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGCTGCAACCTGCAGCCTaGGAAGCAGAGCCTACCACA +
Preference number: 2 (lower is better)
Translates to: VGFAIAKAALELLGSGDLLQPAA*EAEPTT
Trigger: TGTGGTAGGCTCTGCTTCCCAGGCTGCAGGTTGCAG...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR GCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTGGTTGGTTTTGCCATTaGCAAGGCTGCTCTCGAACT +
Preference number: 2 (lower is better)
Translates to: SERTKLPQHGRGPERVAAGWFCH*QGCSRT
Trigger: AGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAACC...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR TCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGAAGTCAGCCAAGGAGTaGGTCTTCTGTTCTTTGTTT +
Preference number: 2 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQKSAKE*VFCSLF
Trigger: AAACAAAGAACAGAAGACTCACTCCTTGGCTGACTT...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTTTTTGTAGAGACGGTTaGTTTTGCCATTGCCAAGGC +
Preference number: 2 (lower is better)
Translates to: SERTKLPQHGRGPERVAAFCRDG*FCHCQG
Trigger: GCCTTGGCAATGGCAAAACCAACCGTCTCTACAAAA...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR TCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGGAATATAATGAGGTGTaGATGATCTCTCATCTTGTC +
Preference number: 2 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQEYNEV*MISHLV
Trigger: GACAAGATGAGAGATCATTCACACCTCATTATATTC...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR TCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGTTCTATATCAAAAGGTaGAACAAAGGACATAGAGGC +
Preference number: 2 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQFYIKR*NKGHRG
Trigger: GCCTCTATGTCCTTTGTTTCACCTTTTGATATAGAA...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR TCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTATAATGAGGTGTGAATaGTCTCTCATCTTGTCATGG +
Preference number: 2 (lower is better)
Translates to: SERTKLPQHGRGPERVAAIMRCE*SLILSW
Trigger: CCATGACAAGATGAGAGATCATTCACACCTCATTAT...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGTCTCTCATCTTGTCATaGTTGGGAAACTTAGTTTTT +
Preference number: 2 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQSLILS*LGNLVF
Trigger: AAAAACTAAGTTTCCCAACCATGACAAGATGAGAGA...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGGTGTTCACTCTGTGGTaGAGACTTAACATTAAAATA +
Preference number: 2 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQVFTLW*RLNIKI
Trigger: TATTTTAATGTTAAGTCTCCACCACAGAGTGAACAC...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTAAACTGCATGAGGTTTaGGAAGAATATGTGCCTGTT +
Preference number: 2 (lower is better)
Translates to: SERTKLPQHGRGPERVAAKLHEV*EEYVPV
Trigger: AACAGGCACATATTCTTCCCAAACCTCATGCAGTTT...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR TCA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAACTGAGATTACAGGCGTaGGCCACTGCAGCCTCCTCT +
Preference number: 2 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWELRLQA*ATAASS
Trigger: AGAGGAGGCTGCAGTGGCTCACGCCTGTAATCTCAG...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR TCA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATACTCCTGGGTTCAGGTaGTCTGCCTGCCTCGTCCCA +
Preference number: 2 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYTPGFR*SACLVP
Trigger: TGGGACGAGGCAGGCAGATCACCTGAACCCAGGAGT...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR GCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTAACATGTATGTCACATaGATTCTGTGTTCACTCTGT +
Preference number: 2 (lower is better)
Translates to: SERTKLPQHGRGPERVAANMYVT*ILCSLC
Trigger: ACAGAGTGAACACAGAATGCATGTGACATACATGTT...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATGCAGCCTCCATGGACTaGCCAGAACCAGTCTGTGGG +
Preference number: 2 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYAASMD*PEPVCG
Trigger: CCCACAGACTGGTTCTGGCCAGTCCATGGAGGCTGC...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR TCA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAACTCACCTCAGCCTCCTaGGTAGCTGGAACTGAAGCT +
Preference number: 2 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWELTSAS*VAGTEA
Trigger: AGCTTCAGTTCCAGCTACTCAGGAGGCTGAGGTGAG...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAACTGCTCTCGAACTCCTaGGTTCAGGTGATCTGCCTG +
Preference number: 2 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWELLSNS*VQVICL
Trigger: CAGGCAGATCACCTGAACCCAGGAGTTCGAGAGCAG...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGTTCTGTTTAACTCAGTaGAAAAAGTCCAATGGCAGT +
Preference number: 2 (lower is better)
Translates to: VGFAIAKAALELLGSGDLFCLTQ*KKSNGS
Trigger: ACTGCCATTGGACTTTTTCCACTGAGTTAAACAGAA...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTCAGCCTCGAACTCCCTaGCTCCAGCAGTCCACTCAC +
Preference number: 2 (lower is better)
Translates to: RADWSILQSVDWSILQYFQPRTP*LQQSTH
Trigger: GTGAGTGGACTGCTGGAGCCAGGGAGTTCGAGGCTG...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CAA 90 bp TTGTCATGGTTGGGAAACTTAGTTTTTAAGGTTTCTGGGGTCTCCTaGGCCAAGAGGGTCTGTTCAGTTGGTGGAGGAGCTAAGGATTTT +
Preference number: 2 (lower is better)
Translates to: LSWLGNLVFKVSGVS*AKRVCSVGGGAKDF
Trigger: AAAATCCTTAGCTCCTCCACCAACTGAACAGACCCTCTTGGCCAAGGAGACCCCAGAAACCTTAAAAACTAAGTTTCCCAACCATGACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGTCTCTCATCTTGTCATaGTTGGGAAACTTAGTTTTT +
Preference number: 2 (lower is better)
Translates to: VGFAIAKAALELLGSGDLSLILS*LGNLVF
Trigger: AAAAACTAAGTTTCCCAACCATGACAAGATGAGAGA...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTCTGCAACCTGCAGCCTaGGAAGCAGAGCCTACCACA +
Preference number: 2 (lower is better)
Translates to: RADWSILQSVDWSILQYFLQPAA*EAEPTT
Trigger: TGTGGTAGGCTCTGCTTCCCAGGCTGCAGGTTGCAG...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR TCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGCTGAGTAGCTGGAACTaGAGCTACAGGTGCATGCCA +
Preference number: 2 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQLSSWN*SYRCMP
Trigger: TGGCATGCACCTGTAGCTTCAGTTCCAGCTACTCAG...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR GCA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATAGAGACGGTTGGTTTTaGCATTGCCAAGGCTGCTCT +
Preference number: 2 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYRDGWF*HCQGCS
Trigger: AGAGCAGCCTTGGCAATGGCAAAACCAACCGTCTCT...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR GCA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAATCATCCAGAATGGAGTaGAGTGGCAAGATCTCGACA +
Preference number: 2 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWESSRME*SGKIST
Trigger: TGTCGAGATCTTGCCACTGCACTCCATTCTGGATGA...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR GCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGTGCAGGTGGACCTGGTaGGTCCTTAGAAGAAAGAGG +
Preference number: 2 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQCRWTW*VLRRKR
Trigger: CCTCTTTCTTCTAAGGACGCACCAGGTCCACCTGCA...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATCAGAATGGAGTGCAGTaGCAAGATCTCGACACTGCA +
Preference number: 2 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYQNGVQ*QDLDTA
Trigger: TGCAGTGTCGAGATCTTGCCACTGCACTCCATTCTG...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR GCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGAGAGACGGTTGGTTTTaGCATTGCCAAGGCTGCTCT +
Preference number: 2 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQRDGWF*HCQGCS
Trigger: AGAGCAGCCTTGGCAATGGCAAAACCAACCGTCTCT...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTGCCAGAACCAGTCTGTaGGCAGTGGTCACTTATCAG +
Preference number: 2 (lower is better)
Translates to: RADWSILQSVDWSILQYFARTSL*AVVTYQ
Trigger: CTGATAAGTGACCACTGCCCACAGACTGGTTCTGGC...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTCCAAAAGCAGGCTCTTaGAGGAAGGGAGGGTATTAC +
Preference number: 2 (lower is better)
Translates to: RADWSILQSVDWSILQYFPKAGS*RKGGYY
Trigger: GTAATACCCTCCCTTCCTCCAAGAGCCTGCTTTTGG...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR TCA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAAATAATGAGGTGTGAATaGTCTCTCATCTTGTCATGG +
Preference number: 2 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWEIMRCE*SLILSW
Trigger: CCATGACAAGATGAGAGATCATTCACACCTCATTAT...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR TCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGGCGTCATCAATACCTTaGCTTTGGCTCATTGAAACC +
Preference number: 2 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQASSIP*LWLIET
Trigger: GGTTTCAATGAGCCAAAGTCAAGGTATTGATGACGC...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGATGGGGCAATTATTCTaGATTATGCAGGTGGACCTG +
Preference number: 2 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQMGQLF*IMQVDL
Trigger: CAGGTCCACCTGCATAATCCAGAATAATTGCCCCAT...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR TCA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAATTCTATATCAAAAGGTaGAACAAAGGACATAGAGGC +
Preference number: 2 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWEFYIKR*NKGHRG
Trigger: GCCTCTATGTCCTTTGTTTCACCTTTTGATATAGAA...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAATTCTGTTTAACTCAGTaGAAAAAGTCCAATGGCAGT +
Preference number: 2 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWEFCLTQ*KKSNGS
Trigger: ACTGCCATTGGACTTTTTCCACTGAGTTAAACAGAA...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAATCTGTGTTCACTCTGTaGTGGAGACTTAACATTAAA +
Preference number: 2 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWESVFTL*WRLNIK
Trigger: TTTAATGTTAAGTCTCCACCACAGAGTGAACACAGA...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR TCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTTTGACTTTGGCTCATTaGAACCCATTTCAGACTTCT +
Preference number: 2 (lower is better)
Translates to: RADWSILQSVDWSILQYFLTLAH*NPFQTS
Trigger: AGAAGTCTGAAATGGGTTTCAATGAGCCAAAGTCAA...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR GCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTGAGATTTTCTTGGGGTaGTCTGTGGTAAGAATAATG +
Preference number: 2 (lower is better)
Translates to: RADWSILQSVDWSILQYFEIFLG*SVVRIM
Trigger: CATTATTCTTACCACAGAGCACCCCAAGAAAATCTC...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGATTACAGAAGTTTTATaGTTGGTGGATTGGCTAGAC +
Preference number: 2 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQITEVL*LVDWLD
Trigger: GTCTAGCCAATCCACCAACCATAAAACTTCTGTAAT...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAAACTGCATGAGGTTTaGGAAGAATATGTGCCTGTT +
Preference number: 2 (lower is better)
Translates to: RADWSILQSVDWSILQYFKLHEV*EEYVPV
Trigger: AACAGGCACATATTCTTCCCAAACCTCATGCAGTTT...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR TCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTGAATATAATGAGGTGTaGATGATCTCTCATCTTGTC +
Preference number: 2 (lower is better)
Translates to: RADWSILQSVDWSILQYFEYNEV*MISHLV
Trigger: GACAAGATGAGAGATCATTCACACCTCATTATATTC...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR GCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAACATGTATGTCACATaGATTCTGTGTTCACTCTGT +
Preference number: 2 (lower is better)
Translates to: RADWSILQSVDWSILQYFNMYVT*ILCSLC
Trigger: ACAGAGTGAACACAGAATGCATGTGACATACATGTT...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGAGGCTACTACACTGTTaGTTTTTAAGATGGATGAAA +
Preference number: 2 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQRLLHC*FLRWMK
Trigger: TTTCATCCATCTTAAAAACCAACAGTGTAGTAGCCT...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTGTGTTCACTCTGTGGTaGAGACTTAACATTAAAATA +
Preference number: 2 (lower is better)
Translates to: RADWSILQSVDWSILQYFVFTLW*RLNIKI
Trigger: TATTTTAATGTTAAGTCTCCACCACAGAGTGAACAC...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTTGTTGGTTTTTAAGATaGATGAAAGAATTCAGGCAG +
Preference number: 2 (lower is better)
Translates to: RADWSILQSVDWSILQYFCWFLR*MKEFRQ
Trigger: CTGCCTGAATTCTTTCATCCATCTTAAAAACCAACA...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 72 bp CGCAAGAGGGGAGGGGAGTCTGGCTGTGGCGCTACGTaGAGTGAGCTAGGTGAAGTCAGCCAAGGAGTGAGT +
Preference number: 3 (lower is better)
Translates to: RKRGGESGCGAT*SELGEVSQGVS
Trigger: ACTCACTCCTTGGCTGACTTCACCTAGCTCACTCCACGTAGCGCCACAGCCAGACTCCCCTCCCCTCTTGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 72 bp AGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTaGCTCCAGCAGTCCACTCACCTCAGCCTCCTGAGT +
Preference number: 3 (lower is better)
Translates to: SGKISTLQPRTP*LQQSTHLSLLS
Trigger: ACTCAGGAGGCTGAGGTGAGTGGACTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR GCA 72 bp CATCCAGAATGGAGTGCAGTGGCAAGATCTCGACACTaGAGCCTCGAACTCCCTGGCTCCAGCAGTCCACTC +
Preference number: 3 (lower is better)
Translates to: HPEWSAVARSRH*SLELPGSSSPL
Trigger: GAGTGGACTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTCCATTCTGGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 72 bp GTGTGCAGCCTCCATGGACTGGCCAGAACCAGTCTGTaGGCAGTGGTCACTTATCAGGAGGGAAGGCTGATC +
Preference number: 3 (lower is better)
Translates to: VCSLHGLARTSL*AVVTYQEGRLI
Trigger: GATCAGCCTTCCCTCCTGATAAGTGACCACTGCCCACAGACTGGTTCTGGCCAGTCCATGGAGGCTGCACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CAA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGAGAGGGTCTGTTCAGTaGGTGGAGGAGCTAAGGATT +
Preference number: 3 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQRGSVQ*VEELRI
Trigger: AATCCTTAGCTCCTCCACCAACTGAACAGACCCTCT...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CAA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGACCAAAAGCAGGCTCTaGGAGGAAGGGAGGGTATTA +
Preference number: 3 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQTKSRL*EEGRVL
Trigger: TAATACCCTCCCTTCCTCCAAGAGCCTGCTTTTGGT...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR GCA 72 bp CCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTaGCTGCCTCGTCCCATCGAAGTGCTGAGATTACAG +
Preference number: 3 (lower is better)
Translates to: PRLLSNSWVQVI*LPRPIEVLRLQ
Trigger: CTGTAATCTCAGCACTTCGATGGGACGAGGCAGGCAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CAA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTGGGAAGGCTGATCAGTaGTCATGTGGAAACCGCAAG +
Preference number: 3 (lower is better)
Translates to: SERTKLPQHGRGPERVAAGKADQ*SCGNRK
Trigger: CTTGCGGTTTCCACATGACAACTGATCAGCCTTCCC...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 72 bp TTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTaGGTTCAGGTGATCTGCCTGCCTCGTCCCATCGAA +
Preference number: 3 (lower is better)
Translates to: LVLPLPRLLSNS*VQVICLPRPIE
Trigger: TTCGATGGGACGAGGCAGGCAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 72 bp ATGGGGTCTCGTTCTATCATCCAGAATGGAGTGCAGTaGCAAGATCTCGACACTGCAGCCTCGAACTCCCTG +
Preference number: 3 (lower is better)
Translates to: MGSRSIIQNGVQ*QDLDTAASNSL
Trigger: CAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTCCATTCTGGATGATAGAACGAGACCCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 72 bp TTATTGAAAGAGCGAAAGAACAAAACTTCCACAGCATaGAAGGGGACCCGAGCGGGTTGCCGCTGCCAGCTC +
Preference number: 3 (lower is better)
Translates to: LLKERKNKTSTA*KGTRAGCRCQL
Trigger: GAGCTGGCAGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCTCTTTCAATAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR GCA 72 bp AATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATCTaGCTAGAGCCTCCGGAGGAGTGTAGCGTCATCAAT +
Preference number: 3 (lower is better)
Translates to: NSGSLWKLEKAI*LEPPEECSVIN
Trigger: ATTGATGACGCTACACTCCTCCGGAGGCTCTAGGCAGATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR GCA 72 bp TGGGGCAATTATTCTGGATTATGCAGGTGGACCTGGTaGGTCCTTAGAAGAAAGAGGCAAAAGAGTCAGAGG +
Preference number: 3 (lower is better)
Translates to: WGNYSGLCRWTW*VLRRKRQKSQR
Trigger: CCTCTGACTCTTTTGCCTCTTTCTTCTAAGGACGCACCAGGTCCACCTGCATAATCCAGAATAATTGCCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 72 bp GGATGGGGCAATTATTCTGGATTATGCAGGTGGACCTaGTGCGTCCTTAGAAGAAAGAGGCAAAAGAGTCAG +
Preference number: 3 (lower is better)
Translates to: GWGNYSGLCRWT*CVLRRKRQKSQ
Trigger: CTGACTCTTTTGCCTCTTTCTTCTAAGGACGCACCAGGTCCACCTGCATAATCCAGAATAATTGCCCCATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CAA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATGTTTCTGGGGTCTCCTaGGCCAAGAGGGTCTGTTCA +
Preference number: 3 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYVSGVS*AKRVCS
Trigger: TGAACAGACCCTCTTGGCCAAGGAGACCCCAGAAAC...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 72 bp AAGCAGAGCCTACCACAGCAACCAAAAGCAGGCTCTTaGAGGAAGGGAGGGTATTACAGAAGTTTTATGGTT +
Preference number: 3 (lower is better)
Translates to: KQSLPQQPKAGS*RKGGYYRSFMV
Trigger: AACCATAAAACTTCTGTAATACCCTCCCTTCCTCCAAGAGCCTGCTTTTGGTTGCTGTGGTAGGCTCTGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 72 bp ATTTGCGGATGGGGCAATTATTCTGGATTATGCAGGTaGACCTGGTGCGTCCTTAGAAGAAAGAGGCAAAAG +
Preference number: 3 (lower is better)
Translates to: ICGWGNYSGLCR*TWCVLRRKRQK
Trigger: CTTTTGCCTCTTTCTTCTAAGGACGCACCAGGTCCACCTGCATAATCCAGAATAATTGCCCCATCCGCAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CAA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGGTTTCTGGGGTCTCCTaGGCCAAGAGGGTCTGTTCA +
Preference number: 3 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQVSGVS*AKRVCS
Trigger: TGAACAGACCCTCTTGGCCAAGGAGACCCCAGAAAC...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CAA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGCGGTTGGTTTTGCCATaGCCAAGGCTGCTCTCGAAC +
Preference number: 3 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQRLVLP*PRLLSN
Trigger: GTTCGAGAGCAGCCTTGGCAATGGCAAAACCAACCG...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CAA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATAGAGGGTCTGTTCAGTaGGTGGAGGAGCTAAGGATT +
Preference number: 3 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYRGSVQ*VEELRI
Trigger: AATCCTTAGCTCCTCCACCAACTGAACAGACCCTCT...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CAA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTGGGAAGGCTGATCAGTaGTCATGTGGAAACCGCAAG +
Preference number: 3 (lower is better)
Translates to: RADWSILQSVDWSILQYFGKADQ*SCGNRK
Trigger: CTTGCGGTTTCCACATGACAACTGATCAGCCTTCCC...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 72 bp AGAGATTTGAGGCTACTACACTGTTGGTTTTTAAGATaGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGA +
Preference number: 3 (lower is better)
Translates to: RDLRLLHCWFLR*MKEFRQPLEAG
Trigger: TCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAACCAACAGTGTAGTAGCCTCAAATCTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 72 bp GGAAGCAGAGAGAGAGATTTGAGGCTACTACACTGTTaGTTTTTAAGATGGATGAAAGAATTCAGGCAGCCT +
Preference number: 3 (lower is better)
Translates to: GSRERDLRLLHC*FLRWMKEFRQP
Trigger: AGGCTGCCTGAATTCTTTCATCCATCTTAAAAACCAACAGTGTAGTAGCCTCAAATCTCTCTCTCTGCTTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CAA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGAGCAGAGAGAGAGATTaGAGGCTACTACACTGTTGG +
Preference number: 3 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQSRERD*RLLHCW
Trigger: CCAACAGTGTAGTAGCCTCAAATCTCTCTCTCTGCT...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR TCA 72 bp GCAGTTAGCAAGGGAGGGAATATAATGAGGTGTGAATaGTCTCTCATCTTGTCATGGTTGGGAAACTTAGTT +
Preference number: 3 (lower is better)
Translates to: AVSKGGNIMRCE*SLILSWLGNLV
Trigger: AACTAAGTTTCCCAACCATGACAAGATGAGAGATCATTCACACCTCATTATATTCCCTCCCTTGCTAACTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 72 bp GACTTTGCAGATGTTATTAAATTAAGGATTTGCGGATaGGGCAATTATTCTGGATTATGCAGGTGGACCTGG +
Preference number: 3 (lower is better)
Translates to: DFADVIKLRICG*GNYSGLCRWTW
Trigger: CCAGGTCCACCTGCATAATCCAGAATAATTGCCCCATCCGCAAATCCTTAATTTAATAACATCTGCAAAGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CAA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGCTTGACTTTGGCTCATaGAAACCCATTTCAGACTTC +
Preference number: 3 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQLDFGS*KPISDF
Trigger: GAAGTCTGAAATGGGTTTCAATGAGCCAAAGTCAAG...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR-3UTR CAA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGCTCATCTTGTCATGGTaGGGAAACTTAGTTTTTAAG +
Preference number: 3 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQLILSW*GNLVFK
Trigger: CTTAAAAACTAAGTTTCCCAACCATGACAAGATGAG...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CCA 72 bp CTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTaGGAAGAATATGTGCCTGTTTATTACAGTATTTTT +
Preference number: 3 (lower is better)
Translates to: LCLSLDCKLHEV*EEYVPVYYSIF
Trigger: AAAAATACTGTAATAAACAGGCACATATTCTTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGCTGAGATTACAGGCGTaGGCCACTGCAGCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQLRLQA*ATAASS
Trigger: AGAGGAGGCTGCAGTGGCTCACGCCTGTAATCTCAG...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR GCA 90 bp TCAAAAGGTGAAACAAAGGACATAGAGGCACCCTGTGTGCAGCCTCCATGGACTCGAGCGGGTTGCCGCTaGCAGCTCGGGTGGCCTGCT +
Preference number: 4 (lower is better)
Translates to: SKGETKDIEAPCVQPPWTRAGCR*QLGWPA
Trigger: AGCAGGCCACCCGAGCTGGCAGCGGCAACCCGCTCG...AGTCCATGGAGGCTGCACACAGGGTGCCTCTATGTCCTTTGTTTCACCTTTTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGCGCTGCCAGCTCGGGTaGCCTGCTTTTATTCCCTTA +
Preference number: 4 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQRCQLG*PAFIPL
Trigger: TAAGGGAATAAAAGCAGGCCACCCGAGCTGGCAGCG...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGACTCCTGGGTTCAGGTaGTCTGCCTGCCTCGTCCCA +
Preference number: 4 (lower is better)
Translates to: VGFAIAKAALELLGSGDLTPGFR*SACLVP
Trigger: TGGGACGAGGCAGGCAGATCACCTGAACCCAGGAGT...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGCACCTCTCAATGGGATaGTCTGTTGGTGATGGGATG +
Preference number: 4 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQHLSMG*SVGDGM
Trigger: CATCCCATCACCAACAGATCATCCCATTGAGAGGTG...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR GCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGAGAGACGGTTGGTTTTaGCATTGCCAAGGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQRDGWF*HCQGCS
Trigger: AGAGCAGCCTTGGCAATGGCAAAACCAACCGTCTCT...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGCAGAATGGAGTGCAGTaGCAAGATCTCGACACTGCA +
Preference number: 4 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQQNGVQ*QDLDTA
Trigger: TGCAGTGTCGAGATCTTGCCACTGCACTCCATTCTG...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTCGCTGCCAGCTCGGGTaGCCTGCTTTTATTCCCTTA +
Preference number: 4 (lower is better)
Translates to: SERTKLPQHGRGPERVAARCQLG*PAFIPL
Trigger: TAAGGGAATAAAAGCAGGCCACCCGAGCTGGCAGCG...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTCAGCAGTGCAGAAAGTaGGACCAGAAGCCTATGGAG +
Preference number: 4 (lower is better)
Translates to: SERTKLPQHGRGPERVAAQQCRK*DQKPME
Trigger: CTCCATAGGCTTCTGGTCTCACTTTCTGCACTGCTG...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546318.2
CDS-3UTR GCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGTCATCCAGAATGGAGTaGAGTGGCAAGATCTCGACA +
Preference number: 4 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQSSRME*SGKIST
Trigger: TGTCGAGATCTTGCCACTGCACTCCATTCTGGATGA...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGAAAGTGGCTGATATCTaGGTGCCTAAGGACCTTGTC +
Preference number: 4 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQKVADI*VPKDLV
Trigger: GACAAGGTCCTTAGGCACCCAGATATCAGCCACTTT...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTGCCAGAACCAGTCTGTaGGCAGTGGTCACTTATCAG +
Preference number: 4 (lower is better)
Translates to: SERTKLPQHGRGPERVAAARTSL*AVVTYQ
Trigger: CTGATAAGTGACCACTGCCCACAGACTGGTTCTGGC...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGTTTTATTCCCTTACTTaGCCCCACCCACATCCTGCT +
Preference number: 4 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQFYSLT*PHPHPA
Trigger: AGCAGGATGTGGGTGGGGCCAAGTAAGGGAATAAAA...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGCTCACCTCAGCCTCCTaGGTAGCTGGAACTGAAGCT +
Preference number: 4 (lower is better)
Translates to: VGFAIAKAALELLGSGDLLTSAS*VAGTEA
Trigger: AGCTTCAGTTCCAGCTACTCAGGAGGCTGAGGTGAG...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGGCGTCATCAATACCTTaGCTTTGGCTCATTGAAACC +
Preference number: 4 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQASSIP*LWLIET
Trigger: GGTTTCAATGAGCCAAAGTCAAGGTATTGATGACGC...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR GCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTTGGCTGATATCTGGGTaGCTAAGGACCTTGTCTCAC +
Preference number: 4 (lower is better)
Translates to: SERTKLPQHGRGPERVAAWLISG*LRTLSH
Trigger: GTGAGACAAGGTCCTTAGGCACCCAGATATCAGCCA...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTGAGACCAGAAGCCTATaGAGGAAGGCTGTGAGCTTT +
Preference number: 4 (lower is better)
Translates to: SERTKLPQHGRGPERVAAETRSL*RKAVSF
Trigger: AAAGCTCACAGCCTTCCTCCATAGGCTTCTGGTCTC...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546318.2
CDS-3UTR GCA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATCGAGCGGGTTGCCGCTaGCAGCTCGGGTGGCCTGCT +
Preference number: 4 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYRAGCR*QLGWPA
Trigger: AGCAGGCCACCCGAGCTGGCAGCGGCAACCCGCTCG...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTCTAAACAGCAGCCAATaGTGTAAGCTGTGGGTGTGT +
Preference number: 4 (lower is better)
Translates to: SERTKLPQHGRGPERVAALNSSQ*CKLWVC
Trigger: ACACACCCACAGCTTACACCATTGGCTGCTGTTTAG...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546318.2
CDS-3UTR CCA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGGCTTTCACATTCTTGTaGGTCCTGCTTTTTCTCTGT +
Preference number: 4 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQAFTFL*VLLFLC
Trigger: ACAGAGAAAAAGCAGGACCCACAAGAATGTGAAAGC...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546318.2
CDS-3UTR GCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGGGTTGGTTTTGCCATTaGCAAGGCTGCTCTCGAACT +
Preference number: 4 (lower is better)
Translates to: VGFAIAKAALELLGSGDLGWFCH*QGCSRT
Trigger: AGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAACC...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR GCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGAGAGACGGTTGGTTTTaGCATTGCCAAGGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: VGFAIAKAALELLGSGDLRDGWF*HCQGCS
Trigger: AGAGCAGCCTTGGCAATGGCAAAACCAACCGTCTCT...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGCCAAAAGCAGGCTCTTaGAGGAAGGGAGGGTATTAC +
Preference number: 4 (lower is better)
Translates to: VGFAIAKAALELLGSGDLPKAGS*RKGGYY
Trigger: GTAATACCCTCCCTTCCTCCAAGAGCCTGCTTTTGG...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGCAGAATGGAGTGCAGTaGCAAGATCTCGACACTGCA +
Preference number: 4 (lower is better)
Translates to: VGFAIAKAALELLGSGDLQNGVQ*QDLDTA
Trigger: TGCAGTGTCGAGATCTTGCCACTGCACTCCATTCTG...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTATGGGGCAATTATTCTaGATTATGCAGGTGGACCTG +
Preference number: 4 (lower is better)
Translates to: SERTKLPQHGRGPERVAAMGQLF*IMQVDL
Trigger: CAGGTCCACCTGCATAATCCAGAATAATTGCCCCAT...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTCCACATCCTGCTGATTaGTCCATTTTACAGAGAGCT +
Preference number: 4 (lower is better)
Translates to: SERTKLPQHGRGPERVAAPHPAD*SILQRA
Trigger: AGCTCTCTGTAAAATGGACCAATCAGCAGGATGTGG...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTAAGTCAGCCAAGGAGTaGGTCTTCTGTTCTTTGTTT +
Preference number: 4 (lower is better)
Translates to: SERTKLPQHGRGPERVAAKSAKE*VFCSLF
Trigger: AAACAAAGAACAGAAGACTCACTCCTTGGCTGACTT...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGTATGGAGGAAGGCTGTaGGCTTTTCCTACCACATCT +
Preference number: 4 (lower is better)
Translates to: VGFAIAKAALELLGSGDLYGGRL*AFPTTS
Trigger: AGATGTGGTAGGAAAAGCTCACAGCCTTCCTCCATA...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546318.2
CDS-3UTR GCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTCAGACTCCTCACATTTaGTTGGTTGTCATGTTCTTC +
Preference number: 4 (lower is better)
Translates to: SERTKLPQHGRGPERVAAQTPHI*LVVMFF
Trigger: GAAGAACATGACAACCAAGCAAATGTGAGGAGTCTG...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR GCA 90 bp TCAAAAGGTGAAACAAAGGACATAGAGGCACCCTGTGTGCAGCCTCCATGGACTTGCAGGTGGACCTGGTaGGTCCTTAGAAGAAAGAGG +
Preference number: 4 (lower is better)
Translates to: SKGETKDIEAPCVQPPWTCRWTW*VLRRKR
Trigger: CCTCTTTCTTCTAAGGACGCACCAGGTCCACCTGCA...AGTCCATGGAGGCTGCACACAGGGTGCCTCTATGTCCTTTGTTTCACCTTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGTTTTATTCCCTTACTTaGCCCCACCCACATCCTGCT +
Preference number: 4 (lower is better)
Translates to: VGFAIAKAALELLGSGDLFYSLT*PHPHPA
Trigger: AGCAGGATGTGGGTGGGGCCAAGTAAGGGAATAAAA...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp TCAAAAGGTGAAACAAAGGACATAGAGGCACCCTGTGTGCAGCCTCCATGGACTTTAGCCAGGCTCCTCTaGGATCTGGCTATTCTGTCT +
Preference number: 4 (lower is better)
Translates to: SKGETKDIEAPCVQPPWTLARLL*DLAILS
Trigger: AGACAGAATAGCCAGATCTCAGAGGAGCCTGGCTAA...AGTCCATGGAGGCTGCACACAGGGTGCCTCTATGTCCTTTGTTTCACCTTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGGCGTCATCAATACCTTaGCTTTGGCTCATTGAAACC +
Preference number: 4 (lower is better)
Translates to: VGFAIAKAALELLGSGDLASSIP*LWLIET
Trigger: GGTTTCAATGAGCCAAAGTCAAGGTATTGATGACGC...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR GCA 90 bp TCAAAAGGTGAAACAAAGGACATAGAGGCACCCTGTGTGCAGCCTCCATGGACTATTAGGCAGCCGTTCTaGAGGGTTTTGCTTAGCCAG +
Preference number: 4 (lower is better)
Translates to: SKGETKDIEAPCVQPPWTIRQPF*RVLLSQ
Trigger: CTGGCTAAGCAAAACCCTGCAGAACGGCTGCCTAAT...AGTCCATGGAGGCTGCACACAGGGTGCCTCTATGTCCTTTGTTTCACCTTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR GCA 90 bp TCAAAAGGTGAAACAAAGGACATAGAGGCACCCTGTGTGCAGCCTCCATGGACTTGGCTGATATCTGGGTaGCTAAGGACCTTGTCTCAC +
Preference number: 4 (lower is better)
Translates to: SKGETKDIEAPCVQPPWTWLISG*LRTLSH
Trigger: GTGAGACAAGGTCCTTAGGCACCCAGATATCAGCCA...AGTCCATGGAGGCTGCACACAGGGTGCCTCTATGTCCTTTGTTTCACCTTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAAGCAGCCTCCATGGACTaGCCAGAACCAGTCTGTGGG +
Preference number: 4 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWEAASMD*PEPVCG
Trigger: CCCACAGACTGGTTCTGGCCAGTCCATGGAGGCTGC...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGTTTTGTAGAGACGGTTaGTTTTGCCATTGCCAAGGC +
Preference number: 4 (lower is better)
Translates to: VGFAIAKAALELLGSGDLFCRDG*FCHCQG
Trigger: GCCTTGGCAATGGCAAAACCAACCGTCTCTACAAAA...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGATGGGGCAATTATTCTaGATTATGCAGGTGGACCTG +
Preference number: 4 (lower is better)
Translates to: VGFAIAKAALELLGSGDLMGQLF*IMQVDL
Trigger: CAGGTCCACCTGCATAATCCAGAATAATTGCCCCAT...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp TCAAAAGGTGAAACAAAGGACATAGAGGCACCCTGTGTGCAGCCTCCATGGACTGGCTCCTCTGAGATCTaGCTATTCTGTCTTGTGGAT +
Preference number: 4 (lower is better)
Translates to: SKGETKDIEAPCVQPPWTGSSEI*LFCLVD
Trigger: ATCCACAAGACAGAATAGCCAGATCTCAGAGGAGCC...AGTCCATGGAGGCTGCACACAGGGTGCCTCTATGTCCTTTGTTTCACCTTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp TCAAAAGGTGAAACAAAGGACATAGAGGCACCCTGTGTGCAGCCTCCATGGACTAAAGTGGCTGATATCTaGGTGCCTAAGGACCTTGTC +
Preference number: 4 (lower is better)
Translates to: SKGETKDIEAPCVQPPWTKVADI*VPKDLV
Trigger: GACAAGGTCCTTAGGCACCCAGATATCAGCCACTTT...AGTCCATGGAGGCTGCACACAGGGTGCCTCTATGTCCTTTGTTTCACCTTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTTCTGTGTTCACTCTGTaGTGGAGACTTAACATTAAA +
Preference number: 4 (lower is better)
Translates to: SERTKLPQHGRGPERVAASVFTL*WRLNIK
Trigger: TTTAATGTTAAGTCTCCACCACAGAGTGAACACAGA...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTATTACAGAAGTTTTATaGTTGGTGGATTGGCTAGAC +
Preference number: 4 (lower is better)
Translates to: SERTKLPQHGRGPERVAAITEVL*LVDWLD
Trigger: GTCTAGCCAATCCACCAACCATAAAACTTCTGTAAT...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
3UTR CAA 72 bp GAAGCAGAGCCTACCACAGCAACCAAAAGCAGGCTCTaGGAGGAAGGGAGGGTATTACAGAAGTTTTATGGT +
Preference number: 4 (lower is better)
Translates to: EAEPTTATKSRL*EEGRVLQKFYG
Trigger: ACCATAAAACTTCTGTAATACCCTCCCTTCCTCCAAGAGCCTGCTTTTGGTTGCTGTGGTAGGCTCTGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGTTGACTTTGGCTCATTaGAACCCATTTCAGACTTCT +
Preference number: 4 (lower is better)
Translates to: VGFAIAKAALELLGSGDLLTLAH*NPFQTS
Trigger: AGAAGTCTGAAATGGGTTTCAATGAGCCAAAGTCAA...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTTCTCTCATCTTGTCATaGTTGGGAAACTTAGTTTTT +
Preference number: 4 (lower is better)
Translates to: SERTKLPQHGRGPERVAASLILS*LGNLVF
Trigger: AAAAACTAAGTTTCCCAACCATGACAAGATGAGAGA...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATCTGCAACCTGCAGCCTaGGAAGCAGAGCCTACCACA +
Preference number: 4 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYLQPAA*EAEPTT
Trigger: TGTGGTAGGCTCTGCTTCCCAGGCTGCAGGTTGCAG...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGCAGCCTCGAACTCCCTaGCTCCAGCAGTCCACTCAC +
Preference number: 4 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQQPRTP*LQQSTH
Trigger: GTGAGTGGACTGCTGGAGCCAGGGAGTTCGAGGCTG...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGAAACTGCATGAGGTTTaGGAAGAATATGTGCCTGTT +
Preference number: 4 (lower is better)
Translates to: VGFAIAKAALELLGSGDLKLHEV*EEYVPV
Trigger: AACAGGCACATATTCTTCCCAAACCTCATGCAGTTT...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTAGGCTACTACACTGTTaGTTTTTAAGATGGATGAAA +
Preference number: 4 (lower is better)
Translates to: SERTKLPQHGRGPERVAARLLHC*FLRWMK
Trigger: TTTCATCCATCTTAAAAACCAACAGTGTAGTAGCCT...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTACTCCTGGGTTCAGGTaGTCTGCCTGCCTCGTCCCA +
Preference number: 4 (lower is better)
Translates to: RADWSILQSVDWSILQYFTPGFR*SACLVP
Trigger: TGGGACGAGGCAGGCAGATCACCTGAACCCAGGAGT...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR GCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGAACATGTATGTCACATaGATTCTGTGTTCACTCTGT +
Preference number: 4 (lower is better)
Translates to: VGFAIAKAALELLGSGDLNMYVT*ILCSLC
Trigger: ACAGAGTGAACACAGAATGCATGTGACATACATGTT...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR GCA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATTGCCATTGCCAAGGCTaGTCTCGAACTCCTGGGTTC +
Preference number: 4 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYCHCQG*SRTPGF
Trigger: GAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCA...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR GCA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAATGCAGGTGGACCTGGTaGGTCCTTAGAAGAAAGAGG +
Preference number: 4 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWECRWTW*VLRRKR
Trigger: CCTCTTTCTTCTAAGGACGCACCAGGTCCACCTGCA...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp TCAAAAGGTGAAACAAAGGACATAGAGGCACCCTGTGTGCAGCCTCCATGGACTTCTGTGAGGACATGTTaGCTAGAGCTTCTTCAATGT +
Preference number: 4 (lower is better)
Translates to: SKGETKDIEAPCVQPPWTSVRTC*LELLQC
Trigger: ACATTGAAGAAGCTCTAGCCAACATGTCCTCACAGA...AGTCCATGGAGGCTGCACACAGGGTGCCTCTATGTCCTTTGTTTCACCTTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGCTGCAACCTGCAGCCTaGGAAGCAGAGCCTACCACA +
Preference number: 4 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQLQPAA*EAEPTT
Trigger: TGTGGTAGGCTCTGCTTCCCAGGCTGCAGGTTGCAG...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAAGAGAGGCTGCAAGACTaGGGCTTTCACATTCTTGTG +
Preference number: 4 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWEERLQD*GFHILV
Trigger: CACAAGAATGTGAAAGCCTCAGTCTTGCAGCCTCTC...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546318.2
CDS-3UTR GCA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAAATTAGGCAGCCGTTCTaGAGGGTTTTGCTTAGCCAG +
Preference number: 4 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWEIRQPF*RVLLSQ
Trigger: CTGGCTAAGCAAAACCCTGCAGAACGGCTGCCTAAT...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGGTGTTCACTCTGTGGTaGAGACTTAACATTAAAATA +
Preference number: 4 (lower is better)
Translates to: VGFAIAKAALELLGSGDLVFTLW*RLNIKI
Trigger: TATTTTAATGTTAAGTCTCCACCACAGAGTGAACAC...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGCTGCTCTCGAACTCCTaGGTTCAGGTGATCTGCCTG +
Preference number: 4 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQLLSNS*VQVICL
Trigger: CAGGCAGATCACCTGAACCCAGGAGTTCGAGAGCAG...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp TCAAAAGGTGAAACAAAGGACATAGAGGCACCCTGTGTGCAGCCTCCATGGACTGAATATAATGAGGTGTaGATGATCTCTCATCTTGTC +
Preference number: 4 (lower is better)
Translates to: SKGETKDIEAPCVQPPWTEYNEV*MISHLV
Trigger: GACAAGATGAGAGATCATTCACACCTCATTATATTC...AGTCCATGGAGGCTGCACACAGGGTGCCTCTATGTCCTTTGTTTCACCTTTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTCTCACCTCAGCCTCCTaGGTAGCTGGAACTGAAGCT +
Preference number: 4 (lower is better)
Translates to: RADWSILQSVDWSILQYFLTSAS*VAGTEA
Trigger: AGCTTCAGTTCCAGCTACTCAGGAGGCTGAGGTGAG...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR GCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTTGCCATTGCCAAGGCTaGTCTCGAACTCCTGGGTTC +
Preference number: 4 (lower is better)
Translates to: RADWSILQSVDWSILQYFCHCQG*SRTPGF
Trigger: GAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCA...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR GCA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATGGTTGGTTTTGCCATTaGCAAGGCTGCTCTCGAACT +
Preference number: 4 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYGWFCH*QGCSRT
Trigger: AGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAACC...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGGCCAGAACCAGTCTGTaGGCAGTGGTCACTTATCAG +
Preference number: 4 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQARTSL*AVVTYQ
Trigger: CTGATAAGTGACCACTGCCCACAGACTGGTTCTGGC...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTCTGCTCTCGAACTCCTaGGTTCAGGTGATCTGCCTG +
Preference number: 4 (lower is better)
Translates to: RADWSILQSVDWSILQYFLLSNS*VQVICL
Trigger: CAGGCAGATCACCTGAACCCAGGAGTTCGAGAGCAG...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR GCA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATTCATCCAGAATGGAGTaGAGTGGCAAGATCTCGACA +
Preference number: 4 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYSSRME*SGKIST
Trigger: TGTCGAGATCTTGCCACTGCACTCCATTCTGGATGA...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATGGCTCCTCTGAGATCTaGCTATTCTGTCTTGTGGAT +
Preference number: 4 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYGSSEI*LFCLVD
Trigger: ATCCACAAGACAGAATAGCCAGATCTCAGAGGAGCC...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAACTCCTCACATTTGCTTaGTTGTCATGTTCTTCCTGC +
Preference number: 4 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWELLTFA*LSCSSC
Trigger: GCAGGAAGAACATGACAACCAAGCAAATGTGAGGAG...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp TCAAAAGGTGAAACAAAGGACATAGAGGCACCCTGTGTGCAGCCTCCATGGACTGTGTTCACTCTGTGGTaGAGACTTAACATTAAAATA +
Preference number: 4 (lower is better)
Translates to: SKGETKDIEAPCVQPPWTVFTLW*RLNIKI
Trigger: TATTTTAATGTTAAGTCTCCACCACAGAGTGAACAC...AGTCCATGGAGGCTGCACACAGGGTGCCTCTATGTCCTTTGTTTCACCTTTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAATTTTGTAGAGACGGTTaGTTTTGCCATTGCCAAGGC +
Preference number: 4 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWEFCRDG*FCHCQG
Trigger: GCCTTGGCAATGGCAAAACCAACCGTCTCTACAAAA...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATAATTCAGGCAGCCTCTaGAAGCTGGAAAAGGCTATC +
Preference number: 4 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYNSGSL*KLEKAI
Trigger: GATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATT...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp TCAAAAGGTGAAACAAAGGACATAGAGGCACCCTGTGTGCAGCCTCCATGGACTTGTTGGTTTTTAAGATaGATGAAAGAATTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: SKGETKDIEAPCVQPPWTCWFLR*MKEFRQ
Trigger: CTGCCTGAATTCTTTCATCCATCTTAAAAACCAACA...AGTCCATGGAGGCTGCACACAGGGTGCCTCTATGTCCTTTGTTTCACCTTTTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTTTAGCCAGGCTCCTCTaGGATCTGGCTATTCTGTCT +
Preference number: 4 (lower is better)
Translates to: RADWSILQSVDWSILQYFLARLL*DLAILS
Trigger: AGACAGAATAGCCAGATCTCAGAGGAGCCTGGCTAA...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTCACCTCTCAATGGGATaGTCTGTTGGTGATGGGATG +
Preference number: 4 (lower is better)
Translates to: RADWSILQSVDWSILQYFHLSMG*SVGDGM
Trigger: CATCCCATCACCAACAGATCATCCCATTGAGAGGTG...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGAATTCAGGCAGCCTCTaGAAGCTGGAAAAGGCTATC +
Preference number: 4 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQNSGSL*KLEKAI
Trigger: GATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATT...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATCCACATCCTGCTGATTaGTCCATTTTACAGAGAGCT +
Preference number: 4 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYPHPAD*SILQRA
Trigger: AGCTCTCTGTAAAATGGACCAATCAGCAGGATGTGG...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR GCA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATCATTCTTGTGGGTCCTaGTTTTTCTCTGTGGTAAAG +
Preference number: 4 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYHSCGS*FFSVVK
Trigger: CTTTACCACAGAGAAAAAGCAGGACCCACAAGAATG...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000546318.2
CDS-3UTR CCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGCTCCTCACATTTGCTTaGTTGTCATGTTCTTCCTGC +
Preference number: 4 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQLLTFA*LSCSSC
Trigger: GCAGGAAGAACATGACAACCAAGCAAATGTGAGGAG...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAAAAACTGCATGAGGTTTaGGAAGAATATGTGCCTGTT +
Preference number: 4 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWEKLHEV*EEYVPV
Trigger: AACAGGCACATATTCTTCCCAAACCTCATGCAGTTT...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGATAATGAGGTGTGAATaGTCTCTCATCTTGTCATGG +
Preference number: 4 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQIMRCE*SLILSW
Trigger: CCATGACAAGATGAGAGATCATTCACACCTCATTAT...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAAGTCAGCCAAGGAGTaGGTCTTCTGTTCTTTGTTT +
Preference number: 4 (lower is better)
Translates to: RADWSILQSVDWSILQYFKSAKE*VFCSLF
Trigger: AAACAAAGAACAGAAGACTCACTCCTTGGCTGACTT...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGTTGACTTTGGCTCATTaGAACCCATTTCAGACTTCT +
Preference number: 4 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQLTLAH*NPFQTS
Trigger: AGAAGTCTGAAATGGGTTTCAATGAGCCAAAGTCAA...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR GCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGGAGATTTTCTTGGGGTaGTCTGTGGTAAGAATAATG +
Preference number: 4 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQEIFLG*SVVRIM
Trigger: CATTATTCTTACCACAGAGCACCCCAAGAAAATCTC...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATTCTGTGTTCACTCTGTaGTGGAGACTTAACATTAAA +
Preference number: 4 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYSVFTL*WRLNIK
Trigger: TTTAATGTTAAGTCTCCACCACAGAGTGAACACAGA...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTATAATGAGGTGTGAATaGTCTCTCATCTTGTCATGG +
Preference number: 4 (lower is better)
Translates to: RADWSILQSVDWSILQYFIMRCE*SLILSW
Trigger: CCATGACAAGATGAGAGATCATTCACACCTCATTAT...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR TCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGTTCTATATCAAAAGGTaGAACAAAGGACATAGAGGC +
Preference number: 4 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQFYIKR*NKGHRG
Trigger: GCCTCTATGTCCTTTGTTTCACCTTTTGATATAGAA...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGTTCTTCGGTAAAACTTaGCTGCATATCGAAAGACAT +
Preference number: 4 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQFFGKT*LHIERH
Trigger: ATGTCTTTCGATATGCAGCCAAGTTTTACCGAAGAA...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATTGTTGGTTTTTAAGATaGATGAAAGAATTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYCWFLR*MKEFRQ
Trigger: CTGCCTGAATTCTTTCATCCATCTTAAAAACCAACA...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CCA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTTTCTTCGGTAAAACTTaGCTGCATATCGAAAGACAT +
Preference number: 4 (lower is better)
Translates to: RADWSILQSVDWSILQYFFFGKT*LHIERH
Trigger: ATGTCTTTCGATATGCAGCCAAGTTTTACCGAAGAA...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGGGGGACCCGAGCGGGTaGCCGCTGCCAGCTCGGGTG +
Preference number: 5 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQGDPSG*PLPARV
Trigger: CACCCGAGCTGGCAGCGGCAACCCGCTCGGGTCCCC...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGCCGTTCTGCAGGGTTTaGCTTAGCCAGGCTCCTCTG +
Preference number: 5 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQPFCRV*LSQAPL
Trigger: CAGAGGAGCCTGGCTAAGCAAAACCCTGCAGAACGG...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGCGGTTGGTTTTGCCATaGCCAAGGCTGCTCTCGAAC +
Preference number: 5 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQRLVLP*PRLLSN
Trigger: GTTCGAGAGCAGCCTTGGCAATGGCAAAACCAACCG...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp AGCGAAAGAACAAAACTTCCACAGCATGGAAGGGGACCCGAGCGGGTTGCCGCTCCGTTCTGCAGGGTTTaGCTTAGCCAGGCTCCTCTG +
Preference number: 5 (lower is better)
Translates to: SERTKLPQHGRGPERVAAPFCRV*LSQAPL
Trigger: CAGAGGAGCCTGGCTAAGCAAAACCCTGCAGAACGG...AGCGGCAACCCGCTCGGGTCCCCTTCCATGCTGTGGAAGTTTTGTTCTTTCGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGCGGTTGGTTTTGCCATaGCCAAGGCTGCTCTCGAAC +
Preference number: 5 (lower is better)
Translates to: VGFAIAKAALELLGSGDLRLVLP*PRLLSN
Trigger: GTTCGAGAGCAGCCTTGGCAATGGCAAAACCAACCG...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTGGGGACCCGAGCGGGTaGCCGCTGCCAGCTCGGGTG +
Preference number: 5 (lower is better)
Translates to: RADWSILQSVDWSILQYFGDPSG*PLPARV
Trigger: CACCCGAGCTGGCAGCGGCAACCCGCTCGGGTCCCC...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGATTCCCACACTGTATTaGGTGTCTAGGAATTCAATC +
Preference number: 5 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQIPTLY*VSRNSI
Trigger: GATTGAATTCCTAGACACCAAATACAGTGTGGGAAT...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGCTCATCTTGTCATGGTaGGGAAACTTAGTTTTTAAG +
Preference number: 5 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQLILSW*GNLVFK
Trigger: CTTAAAAACTAAGTTTCCCAACCATGACAAGATGAG...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGGAGGCTTTCACATTCTaGTGGGTCCTGCTTTTTCTC +
Preference number: 5 (lower is better)
Translates to: VGFAIAKAALELLGSGDLEAFTF*WVLLFL
Trigger: GAGAAAAAGCAGGACCCACAAGAATGTGAAAGCCTC...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000546318.2
CDS-3UTR CAA 90 bp GAGTGCAGTGGCAAGATCTCGACACTGCAGCCTCGAACTCCCTGGCTCCAGCAGGATGATCATCACCATTaGTACAAGAGCCTAGATTTT +
Preference number: 5 (lower is better)
Translates to: ECSGKISTLQPRTPWLQQDDHHH*YKSLDF
Trigger: AAAATCTAGGCTCTTGTACAAATGGTGATGATCATC...CTGCTGGAGCCAGGGAGTTCGAGGCTGCAGTGTCGAGATCTTGCCACTGCACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546318.2
CDS-3UTR CAA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGCTTGACTTTGGCTCATaGAAACCCATTTCAGACTTC +
Preference number: 5 (lower is better)
Translates to: VGFAIAKAALELLGSGDLLDFGS*KPISDF
Trigger: GAAGTCTGAAATGGGTTTCAATGAGCCAAAGTCAAG...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAAGGGAAGGCTGATCAGTaGTCATGTGGAAACCGCAAG +
Preference number: 5 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWEGKADQ*SCGNRK
Trigger: CTTGCGGTTTCCACATGACAACTGATCAGCCTTCCC...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp TCAAAAGGTGAAACAAAGGACATAGAGGCACCCTGTGTGCAGCCTCCATGGACTAATTTGGAGATTTTCTaGGGGTGCTCTGTGGTAAGA +
Preference number: 5 (lower is better)
Translates to: SKGETKDIEAPCVQPPWTNLEIF*GCSVVR
Trigger: TCTTACCACAGAGCACCCCAAGAAAATCTCCAAATT...AGTCCATGGAGGCTGCACACAGGGTGCCTCTATGTCCTTTGTTTCACCTTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp GTTGGTTTTGCCATTGCCAAGGCTGCTCTCGAACTCCTGGGTTCAGGTGATCTGCCATTTTACAGAGTGTaGACTGGTCCATTTTACAAT +
Preference number: 5 (lower is better)
Translates to: VGFAIAKAALELLGSGDLPFYRV*TGPFYN
Trigger: ATTGTAAAATGGACCAGTCAACACTCTGTAAAATGG...CAGATCACCTGAACCCAGGAGTTCGAGAGCAGCCTTGGCAATGGCAAAACCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATGGGAAGGCTGATCAGTaGTCATGTGGAAACCGCAAG +
Preference number: 5 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYGKADQ*SCGNRK
Trigger: CTTGCGGTTTCCACATGACAACTGATCAGCCTTCCC...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTGTTTCTGGGGTCTCCTaGGCCAAGAGGGTCTGTTCA +
Preference number: 5 (lower is better)
Translates to: RADWSILQSVDWSILQYFVSGVS*AKRVCS
Trigger: TGAACAGACCCTCTTGGCCAAGGAGACCCCAGAAAC...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATACCAAAAGCAGGCTCTaGGAGGAAGGGAGGGTATTA +
Preference number: 5 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYTKSRL*EEGRVL
Trigger: TAATACCCTCCCTTCCTCCAAGAGCCTGCTTTTGGT...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAAAGCAGAGAGAGAGATTaGAGGCTACTACACTGTTGG +
Preference number: 5 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWESRERD*RLLHCW
Trigger: CCAACAGTGTAGTAGCCTCAAATCTCTCTCTCTGCT...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAACCAGACTCCTCACATTaGCTTGGTTGTCATGTTCTT +
Preference number: 5 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWEPDSSH*LGCHVL
Trigger: AAGAACATGACAACCAAGCAAATGTGAGGAGTCTGG...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATGTCTGTGAGGACATGTaGGCTAGAGCTTCTTCAATG +
Preference number: 5 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYVCEDM*ARASSM
Trigger: CATTGAAGAAGCTCTAGCCAACATGTCCTCACAGAC...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp TTTTTAAGATGGATGAAAGAATTCAGGCAGCCTCTGGAAGCTGGAAAAGGCTATAGCAGAGAGAGAGATTaGAGGCTACTACACTGTTGG +
Preference number: 5 (lower is better)
Translates to: FLRWMKEFRQPLEAGKGYSRERD*RLLHCW
Trigger: CCAACAGTGTAGTAGCCTCAAATCTCTCTCTCTGCT...ATAGCCTTTTCCAGCTTCCAGAGGCTGCCTGAATTCTTTCATCCATCTTAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGAGGGTCTGTTCAGTaGGTGGAGGAGCTAAGGATT +
Preference number: 5 (lower is better)
Translates to: RADWSILQSVDWSILQYFRGSVQ*VEELRI
Trigger: AATCCTTAGCTCCTCCACCAACTGAACAGACCCTCT...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTACCAAAAGCAGGCTCTaGGAGGAAGGGAGGGTATTA +
Preference number: 5 (lower is better)
Translates to: RADWSILQSVDWSILQYFTKSRL*EEGRVL
Trigger: TAATACCCTCCCTTCCTCCAAGAGCCTGCTTTTGGT...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAAATTCCCACACTGTATTaGGTGTCTAGGAATTCAATC +
Preference number: 5 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWEIPTLY*VSRNSI
Trigger: GATTGAATTCCTAGACACCAAATACAGTGTGGGAAT...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp GGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAGCTAGACAGCCAGACTCCTCACATTaGCTTGGTTGTCATGTTCTT +
Preference number: 5 (lower is better)
Translates to: GPFYRVLTGPFYNTLARQPDSSH*LGCHVL
Trigger: AAGAACATGACAACCAAGCAAATGTGAGGAGTCTGG...CTGTCTAGCTAAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTGTCTGTGAGGACATGTaGGCTAGAGCTTCTTCAATG +
Preference number: 5 (lower is better)
Translates to: RADWSILQSVDWSILQYFVCEDM*ARASSM
Trigger: CATTGAAGAAGCTCTAGCCAACATGTCCTCACAGAC...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTACTCCTCACATTTGCTaGGTTGTCATGTTCTTCCTG +
Preference number: 5 (lower is better)
Translates to: RADWSILQSVDWSILQYFTPHIC*VVMFFL
Trigger: CAGGAAGAACATGACAACCAAGCAAATGTGAGGAGT...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp CTGTACTGCTATCTGTGTCTCTCACTAGATTGTAAACTGCATGAGGTTTGGGAAACCTTAATATATCCATaGTCTGGATTTAAGCGGACA +
Preference number: 5 (lower is better)
Translates to: LYCYLCLSLDCKLHEVWETLIYP*SGFKRT
Trigger: TGTCCGCTTAAATCCAGACAATGGATATATTAAGGT...TTCCCAAACCTCATGCAGTTTACAATCTAGTGAGAGACACAGATAGCAGTACAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTAATTTGGAGATTTTCTaGGGGTGCTCTGTGGTAAGA +
Preference number: 5 (lower is better)
Translates to: RADWSILQSVDWSILQYFNLEIF*GCSVVR
Trigger: TCTTACCACAGAGCACCCCAAGAAAATCTCCAAATT...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS-3UTR CAA 90 bp AGAGCTGATTGGTCCATTTTACAGAGTGTTGACTGGTCCATTTTACAATACTTTCCATTTTACAGAGTGTaGACTGGTCCATTTTACAAT +
Preference number: 5 (lower is better)
Translates to: RADWSILQSVDWSILQYFPFYRV*TGPFYN
Trigger: ATTGTAAAATGGACCAGTCAACACTCTGTAAAATGG...AAAGTATTGTAAAATGGACCAGTCAACACTCTGTAAAATGGACCAATCAGCTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS TCA 72 bp AGCCGTTCTGCAGGGTTTTGCTTAGCCAGGCTCCTCTaGGATCTGGCTATTCTGTCTTGTGGATTTTCAGTT +
Preference number: 6 (lower is better)
Translates to: SRSAGFCLARLL*DLAILSCGFSV
Trigger: AACTGAAAATCCACAAGACAGAATAGCCAGATCTCAGAGGAGCCTGGCTAAGCAAAACCCTGCAGAACGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000371804.4
ENST00000546318.2
CDS GCA 72 bp GCTGCAAGACTGAGGCTTTCACATTCTTGTGGGTCCTaGTTTTTCTCTGTGGTAAAGAACCTCATGGTTGCT +
Preference number: 6 (lower is better)
Translates to: AARLRLSHSCGS*FFSVVKNLMVA
Trigger: AGCAACCATGAGGTTCTTTACCACAGAGAAAAAGCAGGACCCACAAGAATGTGAAAGCCTCAGTCTTGCAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546318.2
CDS TCA 72 bp TGTATTACCCACAAGACATCAGAGAGGCTGCAAGACTaGGGCTTTCACATTCTTGTGGGTCCTGCTTTTTCT +
Preference number: 6 (lower is better)
Translates to: CITHKTSERLQD*GFHILVGPAFS
Trigger: AGAAAAAGCAGGACCCACAAGAATGTGAAAGCCTCAGTCTTGCAGCCTCTCTGATGTCTTGTGGGTAATACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546318.2